genome.fa.s25.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  144  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49676004--49676114	39	2.8	39	86	1	141	31	14	17	36	1.89
49676003--49676139	40	3.5	40	83	2	159	31	13	19	35	1.90
49676023--49676145	39	3.1	38	77	10	104	31	15	17	34	1.92
49676104--49676252	78	1.9	78	90	2	237	32	14	20	32	1.93
49686363--49686464	50	2.0	50	94	0	177	51	8	11	27	1.68
49702176--49702208	9	3.7	9	95	0	57	48	0	39	12	1.40
49702692--49702721	15	2.0	15	93	0	51	76	0	0	23	0.78
49709229--49709281	5	10.0	5	88	8	70	77	1	0	20	0.87
49709237--49709281	23	2.0	23	86	4	65	77	2	0	20	0.87
49712698--49712741	20	2.1	21	88	12	65	45	2	6	45	1.42
49713037--49713219	95	1.9	95	81	8	217	39	9	16	33	1.82
49720298--49720481	92	2.0	92	97	0	350	39	9	19	31	1.83
49722802--49723343	268	2.0	268	93	0	913	43	12	10	32	1.78
49723310--49723362	24	2.2	24	82	0	61	50	9	7	32	1.62
49723506--49723567	18	3.4	18	68	16	56	22	22	27	27	1.99
49723501--49723573	36	2.0	36	89	0	110	21	20	30	27	1.98
49727649--49727701	24	2.2	24	86	0	70	50	9	7	32	1.62
49733059--49733098	21	2.0	20	85	5	53	42	20	0	37	1.52
49742578--49742642	30	2.1	31	88	5	96	27	3	10	58	1.47
49742767--49742799	11	2.9	12	86	13	52	66	0	0	33	0.92
49751540--49751756	35	6.2	35	83	4	240	35	21	12	30	1.90
49755077--49755431	46	7.5	47	74	11	207	25	29	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49759913--49759955	18	2.4	18	92	0	77	39	18	16	25	1.91
49760401--49760500	51	2.0	50	84	9	134	44	3	1	52	1.23
49762721--49762875	42	3.7	42	89	1	204	29	10	19	40	1.86
49762723--49762875	83	1.8	83	85	0	216	28	11	19	40	1.86
49762969--49763012	23	1.9	23	95	0	79	20	15	27	36	1.93
49762967--49763110	62	2.3	62	85	2	191	23	20	25	31	1.98
49769677--49770031	46	7.5	47	74	11	207	25	29	18	27	1.98
49774513--49774555	18	2.4	18	92	0	77	39	18	16	25	1.91
49775001--49775100	51	2.0	50	84	9	134	44	3	1	52	1.23
49776427--49776557	47	2.8	47	82	0	163	25	16	27	30	1.96
49778041--49778136	26	3.7	26	91	0	156	35	23	6	34	1.80
49779086--49779152	23	3.1	22	72	8	57	70	2	8	17	1.27
49781610--49781740	47	2.8	47	82	0	163	25	16	27	30	1.96
49783615--49783685	37	1.9	37	97	0	133	36	22	2	38	1.69
49792291--49792339	13	3.8	13	81	2	55	32	0	26	40	1.56
49792734--49792774	13	3.2	13	86	6	57	34	0	0	65	0.93
49792738--49792775	12	3.0	13	84	3	51	36	0	0	63	0.95
49792955--49792998	22	2.0	22	82	8	54	68	11	9	11	1.40
49807188--49807313	47	2.7	47	97	0	234	28	27	19	23	1.99
49813179--49813242	21	3.1	21	72	4	67	39	17	26	17	1.91
49816486--49816543	21	2.9	21	92	5	93	12	25	18	43	1.85
49822522--49822767	122	2.0	122	99	0	483	34	22	11	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49828794--49828924	50	2.9	43	78	15	138	22	32	22	22	1.98
49828821--49828922	50	2.0	50	94	0	177	24	32	22	20	1.98
49828867--49828965	43	2.3	46	81	10	111	25	30	22	22	1.99
49828795--49828966	93	1.9	92	80	8	206	23	30	22	23	1.99
49837096--49837127	8	4.0	8	91	0	55	46	25	25	3	1.67
49837377--49837468	28	3.3	28	92	3	150	33	27	7	31	1.85
49837574--49837663	27	3.2	27	78	7	92	21	24	22	32	1.98
49844742--49844773	8	4.0	8	91	0	55	46	25	25	3	1.67
49845023--49845114	28	3.3	28	92	3	141	34	26	7	31	1.84
49845220--49845301	27	3.0	27	82	7	103	19	25	23	31	1.98
49854187--49854220	16	2.1	16	88	0	50	8	32	29	29	1.87
49862862--49862894	16	2.1	16	100	0	66	27	12	30	30	1.92
49865744--49865871	49	2.6	49	86	6	179	26	17	29	26	1.97
49874366--49874399	17	2.1	16	88	5	50	14	14	0	70	1.17
49877507--49877582	35	2.1	36	79	11	86	42	5	3	48	1.44
49878381--49878414	17	1.9	18	88	5	52	23	14	0	61	1.33
49888285--49888429	60	2.4	62	82	4	168	25	20	23	30	1.99
49904802--49904826	12	2.1	12	100	0	50	24	36	24	16	1.94
49904987--49905051	9	7.2	9	94	0	94	40	26	10	23	1.87
49906349--49906680	128	2.6	128	82	7	388	35	18	17	28	1.94
49906963--49907001	19	2.1	19	85	9	53	69	7	2	20	1.26
49910040--49910086	25	1.9	24	82	4	58	68	4	10	17	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49919970--49920009	21	2.0	21	90	5	64	10	17	0	72	1.11
49931639--49931690	26	2.0	26	100	0	104	34	15	26	23	1.94
49942859--49942890	6	5.3	6	96	0	55	31	3	53	12	1.54
49945837--49945896	29	2.1	29	100	0	120	40	13	20	26	1.89
49948189--49948245	22	2.5	22	78	13	62	45	1	0	52	1.11
49948275--49948338	28	2.3	26	79	15	67	43	0	6	50	1.27
49952627--49952657	10	3.1	10	95	0	53	45	9	0	45	1.36
49957893--49957970	29	2.7	28	84	11	104	25	14	30	29	1.94
49957923--49958250	174	1.9	174	96	0	602	30	14	24	31	1.94
49963655--49963757	51	2.0	51	98	0	197	25	30	17	27	1.97
49964845--49965138	147	2.0	149	95	2	529	41	10	22	25	1.86
49966244--49966321	29	2.7	28	84	11	104	25	14	30	29	1.94
49966299--49966572	145	1.9	145	97	0	521	29	14	23	31	1.95
49970448--49970651	46	4.4	46	74	11	148	22	26	20	29	1.98
49990268--49990346	34	2.3	34	82	0	86	24	26	27	21	1.99
50000325--50000642	47	6.7	46	70	14	182	23	28	20	28	1.99
50000323--50000642	94	3.4	94	79	8	330	23	28	20	28	1.98
50004919--50005143	40	5.7	40	84	5	260	26	28	21	24	1.99
50004921--50005143	119	1.9	120	83	6	292	26	27	21	24	1.99
50012159--50012277	59	2.0	59	95	0	211	25	21	28	25	1.99
50014894--50014971	29	2.7	28	84	11	104	25	14	30	29	1.94
50014924--50015251	174	1.9	174	98	0	629	29	14	24	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50018660--50018863	46	4.4	46	74	11	157	23	26	20	29	1.98
50018699--50018866	93	1.8	91	83	7	223	23	27	20	28	1.99
50029627--50029718	48	1.9	48	86	6	134	32	9	25	32	1.88
50039327--50039504	27	6.6	27	83	3	178	29	27	15	27	1.96
50039348--50039503	82	1.9	81	86	3	224	29	27	15	27	1.96
50039327--50039503	54	3.3	54	81	6	196	29	27	15	27	1.96
50044241--50044319	34	2.3	34	82	0	86	24	26	27	21	1.99
50051880--50051962	34	2.4	34	89	0	121	26	24	27	21	1.99
50058276--50058405	27	4.9	26	84	4	134	17	22	20	40	1.92
50058276--50058405	54	2.5	53	84	2	154	17	22	20	40	1.92
50058700--50058790	46	2.0	46	97	0	173	21	18	35	24	1.96
50064726--50064802	24	3.2	24	86	0	109	32	1	42	23	1.62
50066212--50066322	27	4.1	27	87	1	143	16	22	23	37	1.93
50069157--50069278	39	3.1	39	80	0	145	22	30	18	28	1.97
50069414--50069462	23	2.1	23	100	0	98	16	16	16	51	1.78
50076387--50076562	46	3.8	45	75	10	176	22	19	28	28	1.98
50076383--50076554	93	1.8	93	90	2	274	22	20	29	27	1.98
50079745--50079798	23	2.4	23	96	3	101	37	3	24	35	1.73
50080115--50080267	21	7.0	21	69	14	76	21	28	13	35	1.92
50080120--50080267	24	6.2	24	71	12	106	20	29	14	35	1.92
50080134--50080255	9	12.9	9	69	10	73	21	28	13	36	1.92
50080115--50080259	30	4.9	30	72	8	118	22	28	13	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50080120--50080195	15	4.9	15	71	9	62	22	28	13	35	1.92
50080164--50080273	18	5.8	19	71	17	68	18	30	14	37	1.90
50080240--50080315	21	3.8	20	80	11	59	10	38	11	39	1.77
50080284--50080357	6	12.3	6	89	0	103	4	47	12	36	1.60
50083263--50083325	31	2.0	31	96	0	117	36	3	12	47	1.58
50086530--50086573	23	1.9	23	86	9	63	15	29	6	47	1.72
50089836--50090034	82	2.5	81	82	9	223	35	15	22	26	1.94
50089985--50090698	24	27.0	27	62	19	114	38	14	21	26	1.91
50089907--50090690	106	7.4	105	98	1	1430	38	14	21	26	1.91
50090735--50090984	51	4.9	51	98	0	473	32	14	25	28	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297