genome.fa.s25.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  136  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46648842--46648984	54	2.6	54	83	4	173	27	21	17	32	1.96
46657570--46657661	27	3.4	27	84	0	121	32	16	17	33	1.92
46659641--46659818	27	6.6	27	83	3	205	26	15	28	29	1.96
46659642--46659797	82	1.9	81	88	3	233	26	15	28	29	1.96
46659638--46659818	82	2.2	81	83	2	229	27	15	27	29	1.96
46661411--46661445	18	1.9	18	100	0	70	17	20	17	45	1.85
46662363--46662428	32	2.1	32	88	0	96	40	13	15	30	1.85
46663072--46663097	13	2.0	13	100	0	52	23	15	7	53	1.67
46668113--46668322	40	5.3	40	90	0	287	24	20	28	25	1.99
46676787--46676829	21	2.0	22	86	4	61	25	6	32	34	1.83
46679809--46679879	36	2.0	36	100	0	142	42	18	22	16	1.89
46683758--46683818	30	2.0	30	83	0	77	32	22	6	37	1.80
46684689--46684763	27	2.8	26	83	4	78	34	2	21	41	1.67
46684821--46684870	21	2.4	21	86	6	66	66	6	6	22	1.36
46687624--46687657	16	2.1	16	100	0	68	55	14	0	29	1.40
46689630--46689690	30	2.0	30	83	0	77	31	22	8	37	1.84
46692039--46692092	27	2.0	27	96	0	99	24	24	3	48	1.67
46692152--46692293	43	3.3	43	77	12	132	26	25	21	26	2.00
46692177--46692311	43	3.2	42	75	14	132	26	27	21	24	1.99
46693172--46693224	21	2.7	20	80	8	63	16	18	18	45	1.86
46693439--46693473	13	2.7	13	95	0	61	31	0	5	62	1.18
46697178--46697270	47	2.0	47	97	0	177	36	17	19	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46698030--46698115	43	2.0	43	100	0	172	41	18	18	20	1.90
46704832--46704891	27	2.3	26	82	2	66	36	20	21	21	1.95
46704932--46704983	27	2.0	26	84	3	68	34	21	26	17	1.95
46705218--46705254	11	3.6	11	79	20	53	0	37	29	32	1.58
46705218--46705254	19	1.9	19	100	0	74	0	37	29	32	1.58
46708954--46709103	43	3.5	43	72	4	135	34	21	15	28	1.94
46711952--46712171	48	4.6	48	86	0	305	26	17	31	24	1.97
46715127--46715389	40	6.6	40	87	3	309	26	28	20	23	1.99
46723071--46723498	40	10.7	40	96	1	741	21	26	20	31	1.98
46726246--46726410	48	3.5	48	81	0	179	26	15	29	27	1.96
46726329--46726441	48	2.4	48	83	3	129	28	17	25	28	1.98
46733934--46734357	48	8.8	48	88	0	587	26	17	31	25	1.97
46744771--46744875	40	2.6	41	80	8	126	23	23	27	24	2.00
46750411--46750435	10	2.5	10	100	0	50	32	0	28	40	1.57
46751901--46752320	27	15.9	27	83	5	457	24	19	20	35	1.96
46751930--46752318	209	1.9	209	85	4	543	24	19	21	35	1.96
46752332--46752529	27	7.3	27	87	2	254	38	8	24	28	1.84
46752332--46752529	81	2.4	81	90	1	308	38	8	24	28	1.84
46752332--46752553	81	2.7	81	86	2	250	38	8	23	29	1.84
46752594--46752815	27	8.3	27	74	6	155	32	8	18	40	1.81
46752593--46752763	81	2.1	81	81	9	197	33	7	18	40	1.78
46752637--46752815	54	3.3	54	82	0	180	31	9	19	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46752637--46752840	54	3.8	53	79	5	171	31	9	19	39	1.84
46752744--46752840	26	3.7	26	70	10	72	27	10	20	41	1.85
46754790--46754855	6	10.8	6	76	15	55	45	13	19	21	1.85
46754799--46754865	31	2.2	31	88	0	98	46	11	20	20	1.82
46755015--46755116	27	3.8	26	82	10	98	37	20	22	19	1.95
46755015--46755116	54	1.9	53	81	2	123	37	20	22	19	1.95
46755257--46755321	22	3.0	22	80	8	78	33	23	23	20	1.97
46755747--46756086	27	12.4	27	86	4	448	24	23	19	32	1.98
46756569--46756845	27	10.2	27	84	3	279	26	17	20	35	1.95
46756569--46756771	81	2.5	82	90	1	318	25	18	21	34	1.96
46756861--46757031	27	6.4	26	80	6	128	39	5	25	28	1.79
46756862--46757031	54	3.2	54	86	3	218	39	5	25	28	1.79
46756891--46757051	80	2.0	79	89	1	241	39	6	26	28	1.80
46756889--46757052	53	3.1	54	85	6	217	39	6	26	28	1.80
46756889--46757052	27	6.1	27	85	4	208	39	6	26	28	1.80
46756889--46757072	80	2.3	80	81	2	217	38	6	25	29	1.81
46757035--46757363	27	12.2	27	78	7	220	31	10	18	39	1.84
46757035--46757312	54	5.1	54	80	5	258	33	10	17	39	1.83
46757295--46757363	26	2.6	25	80	15	77	24	10	24	40	1.86
46760378--46760423	24	1.9	24	90	0	74	28	10	28	32	1.91
46767309--46767481	46	3.7	46	78	13	210	21	21	27	28	1.99
46767306--46767476	93	1.8	93	96	0	315	21	21	28	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46772369--46772481	40	2.8	40	82	1	136	24	30	22	23	1.99
46791926--46792052	54	2.4	54	95	0	227	26	15	17	40	1.90
46791926--46792059	27	5.0	27	91	0	205	26	15	17	40	1.90
46795527--46795684	86	1.8	86	84	8	214	24	17	25	32	1.96
46795520--46795709	43	4.4	43	78	9	190	26	17	23	32	1.97
46802038--46802066	13	2.2	13	100	0	58	58	0	13	27	1.36
46802364--46802511	43	3.4	43	80	7	133	27	18	20	33	1.96
46802399--46802519	43	2.8	42	82	5	136	26	18	22	33	1.97
46805713--46805824	23	5.0	23	76	17	101	24	21	19	34	1.96
46805701--46805824	45	2.8	45	83	2	151	25	20	19	35	1.95
46823060--46823197	40	3.5	40	87	3	172	23	25	28	21	1.99
46825234--46825294	28	2.1	29	87	3	88	32	26	11	29	1.91
46825499--46825541	8	5.4	8	85	0	50	4	16	23	55	1.59
46825499--46825541	16	2.7	16	92	0	68	4	16	23	55	1.59
46841566--46841827	39	6.7	40	88	7	337	24	27	22	25	2.00
46851589--46851649	30	2.0	30	87	0	86	37	8	24	29	1.84
46852384--46852567	67	2.8	64	76	8	185	29	16	30	22	1.96
46852807--46852856	23	2.1	24	81	3	57	38	0	24	38	1.56
46861312--46861342	15	2.1	15	93	0	53	54	25	0	19	1.44
46868987--46869031	22	2.0	22	95	0	81	24	2	31	42	1.67
46886800--46886828	13	2.2	13	100	0	58	24	20	13	41	1.89
46892590--46892696	34	3.2	33	81	1	106	28	20	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46895840--46895917	34	2.3	34	86	0	111	29	23	23	24	1.99
46918801--46919105	40	7.6	40	85	4	409	26	27	21	24	1.99
46923201--46923314	43	2.7	43	86	2	149	28	26	16	28	1.97
46923580--46923714	67	2.0	67	98	0	261	34	13	6	45	1.69
46928992--46929169	27	6.6	27	84	3	205	29	28	15	26	1.96
46929013--46929168	82	1.9	81	88	3	233	29	28	15	26	1.96
46937469--46937646	27	6.6	27	84	3	205	29	28	15	26	1.96
46937490--46937645	82	1.9	81	88	3	233	29	28	15	26	1.96
46941034--46941291	43	6.1	43	78	6	238	29	25	15	29	1.96
46941096--46941291	83	2.3	83	84	4	241	31	25	14	29	1.95
46947469--46947733	40	6.7	40	85	5	286	26	27	21	24	1.99
46947436--46947733	80	3.7	80	79	9	263	25	27	21	25	1.99
46947665--46947742	40	1.9	41	82	10	97	26	28	20	24	1.99
46954111--46954260	54	2.8	54	89	2	230	24	26	16	32	1.96
46957702--46957807	42	2.5	42	83	1	133	25	27	18	28	1.98
46959580--46959851	48	5.6	48	78	4	208	27	26	19	26	1.99
46959675--46959859	49	3.8	49	87	3	232	25	29	18	25	1.98
46963911--46964447	269	2.0	268	97	0	1011	28	23	12	36	1.90
46972553--46972746	39	5.0	39	84	5	191	27	28	22	21	1.99
46972585--46972746	78	2.1	78	85	5	213	25	29	22	21	1.99
46979690--46979775	45	1.9	45	87	0	127	31	25	18	24	1.98
46984771--46984976	40	5.2	40	97	0	369	22	22	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46991486--46991511	13	2.0	13	100	0	52	30	0	7	61	1.24
46992885--46993130	40	6.2	40	95	2	408	22	21	26	28	1.99
47003582--47003625	19	2.3	19	88	0	61	29	6	20	43	1.78
47003592--47003641	19	2.7	19	84	3	66	30	8	20	42	1.80
47009777--47009983	104	2.0	104	99	0	405	31	17	19	31	1.95
47012217--47012388	46	3.7	46	77	13	190	22	22	26	29	1.99
47012214--47012384	93	1.8	93	93	0	297	22	22	27	28	1.99
47013336--47013449	38	3.1	38	63	16	105	41	7	16	34	1.78
47013327--47013463	71	1.9	71	100	0	274	39	8	15	37	1.77
47013351--47013464	35	3.1	38	65	12	112	37	8	16	36	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297