genome.fa.s25.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  97  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35026554--35026610	30	1.9	30	85	0	78	26	33	22	17	1.96
35029995--35030168	27	6.4	27	84	4	197	26	14	28	30	1.95
35029995--35030147	82	1.9	81	87	4	227	26	15	28	30	1.96
35029988--35030168	82	2.2	81	82	2	220	26	15	27	30	1.96
35037639--35037665	12	2.2	12	100	0	54	51	7	0	40	1.30
35038147--35038324	27	6.6	27	83	3	205	26	15	28	29	1.96
35038148--35038303	82	1.9	81	88	3	233	26	15	28	29	1.96
35038144--35038324	82	2.2	81	83	2	229	27	15	27	29	1.96
35047526--35047787	39	6.7	40	87	7	337	25	22	27	24	2.00
35057372--35057635	40	6.7	40	89	5	360	25	21	27	25	1.99
35057372--35057668	119	2.5	118	81	9	338	26	21	27	25	1.99
35067741--35067787	19	2.6	18	80	6	51	17	4	2	76	1.04
35069652--35069897	49	5.0	49	81	3	285	28	26	18	26	1.98
35069666--35069897	100	2.3	99	84	4	297	28	26	18	26	1.98
35088664--35088717	27	2.0	27	85	3	74	35	20	22	22	1.96
35088718--35088782	27	2.4	27	84	5	78	23	21	20	35	1.96
35095054--35095115	27	2.3	28	88	8	101	32	24	25	17	1.97
35095709--35095770	27	2.3	27	88	2	90	33	19	20	25	1.96
35095770--35095837	27	2.5	26	88	6	100	25	20	17	36	1.94
35109318--35109439	61	2.0	61	100	0	244	27	22	19	29	1.98
35118143--35118179	18	2.1	18	94	0	65	32	16	16	35	1.91
35119012--35119060	24	2.0	24	100	0	98	16	18	24	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35119534--35119568	16	2.2	16	89	0	52	60	17	11	11	1.59
35119523--35119568	24	2.0	23	82	4	56	54	19	15	10	1.70
35128552--35128611	30	2.0	30	90	0	93	28	25	8	38	1.84
35129607--35129741	29	4.8	29	81	3	150	27	14	31	26	1.94
35129619--35129741	57	2.2	57	82	5	142	26	15	33	25	1.95
35140822--35140915	46	2.0	46	95	0	170	35	23	2	39	1.67
35145920--35145970	26	2.0	26	100	0	102	25	19	35	19	1.95
35147743--35149745	999	2.0	999	99	0	3934	24	18	22	33	1.97
35153006--35153163	79	2.0	79	100	0	316	30	22	26	20	1.98
35154067--35154106	21	1.9	21	85	10	55	55	5	15	25	1.60
35162811--35163570	40	19.0	40	87	0	1088	24	20	22	32	1.98
35162811--35163570	80	9.5	80	98	0	1457	24	20	22	32	1.98
35163678--35163763	40	2.2	39	85	6	111	23	20	27	27	1.99
35169118--35169232	55	2.1	56	82	11	139	34	22	24	18	1.96
35169143--35169232	27	3.2	27	85	7	110	32	24	24	18	1.97
35169143--35169232	28	3.2	26	85	7	108	32	24	24	18	1.97
35169338--35169405	28	2.4	28	95	0	118	32	7	26	33	1.84
35170460--35170492	12	2.6	13	85	9	50	45	0	45	9	1.35
35175726--35175909	79	2.3	81	83	11	231	25	26	22	26	2.00
35175726--35175909	40	4.6	41	81	12	190	25	26	22	26	2.00
35180102--35180216	55	2.1	56	82	11	139	34	22	24	18	1.96
35180127--35180216	27	3.2	27	85	7	110	32	24	24	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35180127--35180216	28	3.2	26	85	7	108	32	24	24	18	1.97
35180322--35180389	28	2.4	28	92	0	109	32	7	25	35	1.83
35181444--35181476	12	2.6	13	85	9	50	45	0	45	9	1.35
35183384--35183568	40	4.7	40	80	8	209	24	22	27	26	2.00
35183437--35183591	79	2.0	79	83	5	197	24	21	27	27	1.99
35191687--35191774	23	3.8	23	82	8	99	23	22	17	36	1.94
35196153--35196318	46	3.6	44	81	9	163	24	31	18	25	1.97
35196193--35196365	93	1.9	92	84	8	235	23	31	20	24	1.98
35196703--35196762	30	2.0	31	86	3	86	30	23	11	35	1.90
35205322--35205451	47	2.8	47	82	8	151	23	27	20	29	1.98
35205322--35205489	47	3.6	47	78	10	150	23	27	20	28	1.99
35215499--35215945	49	9.0	49	94	3	763	31	8	29	29	1.88
35215499--35215939	200	2.2	198	94	3	782	32	9	28	29	1.88
35215913--35215968	28	2.0	28	92	0	94	33	1	30	33	1.68
35215864--35216009	77	1.9	77	86	0	211	31	8	32	28	1.86
35216063--35216141	37	2.1	37	90	0	122	26	18	29	25	1.98
35220350--35220397	25	1.9	25	100	0	96	33	8	0	58	1.28
35222047--35222121	9	8.6	9	79	8	66	46	17	1	34	1.56
35222065--35222148	36	2.4	36	92	4	136	47	16	0	35	1.47
35225423--35225535	53	2.1	53	83	3	138	29	24	15	30	1.96
35225515--35225578	30	2.1	30	100	0	128	25	26	17	31	1.97
35233308--35233347	21	2.0	20	90	5	62	35	0	22	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35233313--35233355	21	2.1	21	83	12	54	32	2	20	44	1.65
35239074--35239337	43	6.2	43	72	6	196	25	19	27	28	1.99
35239091--35239333	86	2.8	86	79	4	278	26	18	27	26	1.98
35244406--35244557	49	3.0	49	83	3	187	31	25	18	25	1.97
35252366--35252395	15	1.9	16	93	6	53	53	33	3	10	1.51
35252480--35252713	13	17.8	13	69	21	150	36	55	0	8	1.30
35252478--35252724	66	3.7	66	98	1	469	36	55	0	8	1.30
35252493--35252724	22	10.6	21	75	8	194	36	55	0	8	1.31
35253074--35253209	3	45.3	3	71	10	55	30	8	2	58	1.41
35253074--35253115	19	2.3	18	87	4	57	26	2	2	69	1.13
35253100--35253184	33	2.3	39	82	11	110	35	11	0	52	1.38
35255974--35256016	19	2.3	19	88	8	61	30	23	6	39	1.81
35256149--35256199	24	2.1	24	85	7	68	50	15	23	9	1.73
35260395--35260519	61	2.0	60	87	7	178	33	17	12	36	1.87
35260664--35261152	205	2.4	205	91	0	789	31	18	21	29	1.97
35261240--35261344	53	2.0	53	88	0	156	29	19	21	29	1.97
35263393--35264264	395	2.2	396	92	0	1476	31	17	24	26	1.97
35261361--35264275	44	66.3	44	74	8	2078	31	18	24	26	1.97
35264259--35264358	44	2.2	45	83	1	130	35	16	27	22	1.94
35264546--35264575	15	1.9	16	93	6	53	53	33	3	10	1.51
35264664--35264699	13	2.8	13	86	0	54	38	50	0	11	1.38
35272186--35272341	29	5.3	29	78	5	172	38	14	24	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35272191--35272341	58	2.6	58	90	2	241	39	13	24	22	1.91
35277607--35277641	18	1.9	18	88	0	52	54	34	0	11	1.37
35283168--35283443	140	2.0	140	93	0	471	32	13	23	30	1.93
35293041--35293088	24	2.0	24	91	0	78	43	2	22	31	1.65
35293533--35293579	20	2.3	21	77	7	60	36	14	12	36	1.85
35296464--35296641	40	4.5	40	87	3	236	23	26	23	25	2.00
35299413--35299486	34	2.2	34	85	2	96	29	24	22	22	1.99
35309227--35309432	40	5.2	40	87	1	281	26	27	21	24	1.99
35318054--35318231	27	6.6	27	84	3	205	29	28	15	26	1.96
35318075--35318230	82	1.9	81	88	3	233	29	28	15	26	1.96
35319031--35319101	37	1.9	37	97	0	133	36	30	14	18	1.90
35319516--35319542	12	2.2	12	100	0	54	40	0	7	51	1.30
35322273--35322350	34	2.3	34	84	0	111	29	25	23	21	1.99
35326794--35326924	57	2.3	58	77	6	133	32	22	16	28	1.96
35328454--35328559	42	2.5	43	81	1	124	25	19	22	32	1.98
35328415--35328571	43	3.7	42	76	7	138	24	19	23	33	1.97
35334516--35334540	13	1.9	13	100	0	50	32	0	16	52	1.44
35335858--35335927	27	2.8	24	83	12	104	20	18	28	32	1.96
35339079--35339166	45	2.0	45	88	0	131	37	22	12	27	1.90
35341219--35341332	40	2.8	40	81	7	151	35	16	28	19	1.93
35347166--35347232	34	2.0	34	84	0	89	28	5	23	41	1.78
35355092--35355192	49	2.1	48	94	1	175	25	8	9	55	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35355289--35355492	53	3.8	53	77	4	185	37	17	23	21	1.94
35357394--35357490	27	3.5	28	90	2	133	26	13	27	31	1.94
35357422--35357504	27	3.0	27	87	5	96	31	12	24	32	1.91
35357394--35357505	28	4.0	27	83	6	98	29	12	25	33	1.92
35360122--35360152	16	1.9	16	93	0	53	45	22	19	12	1.84
35360370--35360431	29	2.2	29	85	2	81	32	14	24	29	1.94
35360385--35360484	29	3.5	29	79	1	112	27	17	28	28	1.97
35363626--35363656	16	1.9	16	93	0	53	45	22	19	12	1.84
35363880--35363981	29	3.6	29	77	6	109	27	15	29	27	1.96
35370967--35371018	27	2.0	26	88	3	77	15	23	23	38	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297