genome.fa.s25.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  86  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31126780--31126841	29	2.1	29	96	0	115	37	9	25	27	1.87
31131323--31131388	20	3.3	20	76	2	71	13	28	19	37	1.90
31135920--31136088	29	5.8	29	85	3	216	38	12	27	21	1.89
31135927--31136088	87	1.9	87	89	2	254	38	11	28	21	1.88
31135920--31136187	58	4.6	57	84	9	233	38	14	25	22	1.92
31136019--31136188	30	5.7	30	86	6	186	37	15	23	23	1.93
31136019--31136189	60	2.9	59	86	3	211	37	15	23	23	1.93
31136048--31136189	30	4.8	30	87	4	198	36	16	24	22	1.94
31139429--31139588	43	3.7	43	78	15	161	34	25	16	24	1.95
31140546--31140657	56	2.0	56	98	0	215	33	13	10	41	1.79
31143657--31145541	942	2.0	941	94	0	3338	29	20	18	31	1.96
31149497--31149610	60	1.9	60	89	3	176	33	13	16	36	1.87
31153081--31153112	16	2.0	16	93	0	55	78	6	6	9	1.10
31165687--31165803	55	2.1	55	80	3	128	26	27	25	20	1.99
31167733--31167784	23	2.3	23	83	9	63	19	13	5	61	1.52
31171695--31171769	37	2.0	37	100	0	150	41	29	13	16	1.86
31176966--31177004	18	2.2	18	86	9	53	61	0	7	30	1.24
31184568--31184694	52	2.5	51	87	6	168	34	17	22	25	1.95
31184670--31184848	31	5.8	31	91	1	288	29	18	26	25	1.98
31190973--31191017	18	2.6	17	80	13	56	60	4	28	6	1.42
31198161--31198226	23	3.0	23	80	6	91	15	19	24	40	1.90
31200477--31200638	81	2.0	81	92	2	272	42	25	10	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31202970--31203021	26	2.0	25	88	3	77	38	13	15	32	1.86
31205356--31205445	40	2.2	40	82	3	110	23	28	16	31	1.96
31213006--31213045	21	1.9	21	85	10	55	12	7	27	52	1.66
31213014--31213055	21	2.0	21	85	0	57	11	9	23	54	1.66
31214294--31214323	15	1.9	16	93	6	53	73	16	0	10	1.09
31215599--31215678	42	1.9	42	100	0	160	47	2	0	50	1.14
31217475--31217524	20	2.4	21	83	12	68	28	12	10	50	1.71
31246485--31246541	16	3.6	16	95	0	87	29	0	36	33	1.58
31246787--31246821	18	2.0	17	88	5	52	54	0	0	45	0.99
31246921--31246962	15	2.7	16	82	14	52	52	2	0	45	1.13
31246674--31246971	154	1.9	156	95	2	546	44	3	5	47	1.41
31246930--31246971	15	2.9	15	82	10	52	52	0	0	47	1.00
31250181--31250207	11	2.5	11	100	0	54	51	18	7	22	1.70
31253647--31253702	21	2.6	21	91	2	85	41	25	12	21	1.88
31254770--31254905	33	4.3	33	78	12	167	61	13	17	7	1.55
31254836--31254890	18	3.2	17	71	23	53	61	16	14	7	1.54
31255721--31255771	11	4.7	10	86	13	66	27	33	0	39	1.57
31257467--31257527	30	2.0	30	90	0	95	31	47	14	6	1.70
31258363--31258392	14	2.1	15	93	6	53	23	0	20	56	1.42
31259485--31259603	41	2.8	43	76	6	116	28	17	24	29	1.97
31259571--31259633	31	2.0	31	100	0	126	28	22	25	23	1.99
31266201--31266298	27	3.5	28	90	2	135	26	13	28	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31266229--31266311	27	3.0	27	87	5	96	30	12	25	32	1.92
31266201--31266312	28	4.0	27	83	6	98	28	12	25	33	1.92
31273826--31273855	2	15.0	2	100	0	60	50	0	0	50	1.00
31274306--31274459	28	5.5	28	92	1	238	27	12	27	32	1.92
31275998--31276260	125	2.1	125	94	0	454	26	17	15	39	1.90
31276386--31276422	17	2.2	17	100	0	74	56	27	0	16	1.40
31278246--31278312	25	2.7	25	92	0	107	37	11	11	38	1.79
31278246--31278325	25	3.2	25	82	7	99	36	11	13	38	1.81
31280874--31280917	22	2.0	22	100	0	88	40	22	4	31	1.74
31282948--31283027	25	3.2	25	90	0	124	37	8	15	38	1.78
31287539--31287567	14	2.1	14	100	0	58	48	20	13	17	1.81
31291575--31291621	25	1.9	25	86	4	69	21	6	2	70	1.20
31292119--31292176	30	2.0	27	83	9	71	60	1	1	36	1.17
31293983--31294133	53	2.8	53	88	4	205	29	27	16	26	1.97
31298628--31298690	26	2.5	26	89	2	92	34	14	12	38	1.84
31299029--31299091	30	2.1	30	90	0	99	25	4	14	55	1.58
31299521--31299554	6	5.7	6	85	0	50	14	20	0	64	1.28
31301003--31301039	9	4.0	9	89	3	56	67	8	2	21	1.29
31303356--31303390	17	2.1	17	100	0	70	28	0	34	37	1.58
31303509--31303544	18	2.0	18	94	0	63	13	0	63	22	1.29
31308673--31309203	82	6.5	82	97	0	976	28	8	14	48	1.72
31309451--31309477	14	1.9	14	100	0	54	29	7	11	51	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31310617--31310755	69	2.0	69	97	0	260	42	0	9	48	1.35
31312647--31312694	24	2.0	24	87	0	69	45	8	27	18	1.78
31312785--31312950	21	7.9	21	62	7	59	16	20	18	45	1.86
31312786--31312939	42	3.7	42	83	10	183	15	20	18	45	1.85
31312786--31312956	84	2.0	83	82	6	202	15	21	18	45	1.86
31314399--31314427	9	3.3	9	90	9	51	79	0	0	20	0.74
31319098--31319188	4	22.0	4	76	16	64	69	5	23	2	1.21
31319121--31319150	5	5.8	5	96	4	51	63	16	20	0	1.31
31321510--31321561	27	1.9	27	92	0	86	28	3	32	34	1.76
31328594--31328700	26	4.2	26	92	1	180	32	6	24	36	1.81
31331541--31331631	4	22.0	4	76	16	64	69	5	23	2	1.21
31331564--31331593	5	5.8	5	96	4	51	63	16	20	0	1.31
31338791--31338860	36	1.9	36	97	0	131	12	12	12	61	1.57
31344157--31344448	160	1.8	160	82	4	383	42	11	13	32	1.81
31346063--31346531	62	7.5	62	81	0	492	26	25	25	22	2.00
31346063--31346531	186	2.5	186	83	2	557	26	25	25	22	2.00
31346849--31346905	30	1.9	30	89	7	89	22	31	28	17	1.97
31351533--31351571	20	2.0	20	90	10	62	28	58	2	10	1.44
31353299--31353339	21	2.0	21	90	0	64	21	17	34	26	1.95
31353428--31353472	6	7.5	6	85	11	58	15	2	0	82	0.77
31353428--31353472	19	2.5	19	89	7	67	15	2	0	82	0.77
31363181--31363372	62	3.1	62	90	0	285	28	27	24	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31363280--31363482	109	1.9	109	84	2	273	30	25	20	23	1.98
31374508--31374532	4	6.2	4	100	0	50	24	0	52	24	1.48
31375287--31375332	21	2.2	21	84	7	58	52	6	6	34	1.53
31380251--31380364	56	2.0	56	93	3	194	36	20	23	19	1.95
31394099--31394269	39	4.4	39	83	5	195	28	19	25	26	1.99
31394106--31394436	78	4.2	78	83	6	298	23	21	26	28	1.99
31394223--31394438	39	5.5	39	89	1	324	20	22	27	28	1.99
31394183--31394437	117	2.2	118	83	5	329	23	22	26	27	1.99
31420744--31420776	17	1.9	17	93	0	57	54	18	0	27	1.44
31435725--31435758	18	1.9	18	94	5	61	29	14	11	44	1.81
31437014--31437087	28	2.6	28	84	0	94	25	36	14	22	1.93
31437305--31437337	16	2.1	16	94	0	57	9	24	24	42	1.83
31438703--31438880	40	4.5	40	88	3	236	24	28	24	23	2.00
31450088--31450326	29	8.2	29	82	3	273	23	23	15	37	1.93
31450088--31450318	88	2.6	87	82	6	286	23	23	15	37	1.93
31450087--31450318	117	2.0	117	88	1	349	23	23	15	37	1.92
31458688--31458765	28	2.8	28	80	0	84	33	11	26	28	1.91
31466365--31466542	27	6.6	27	84	3	205	29	28	15	26	1.96
31466386--31466541	82	1.9	81	88	3	233	29	28	15	26	1.96
31467016--31467042	12	2.2	12	100	0	54	40	0	7	51	1.30
31468652--31468698	19	2.3	21	85	7	62	31	25	17	25	1.97
31469984--31470017	16	2.1	17	94	5	61	8	0	11	79	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31471319--31471378	30	2.0	30	96	0	111	46	21	13	18	1.83
31472481--31472519	20	2.0	20	84	0	51	35	28	2	33	1.71
31472610--31472718	43	2.6	43	85	4	141	29	22	17	30	1.97
31478368--31478417	12	4.2	13	78	21	56	36	0	0	64	0.94
31478377--31478411	11	3.1	11	91	4	52	31	0	0	68	0.90
31487804--31487857	25	2.2	25	100	0	108	29	33	14	22	1.94
31497181--31497338	43	3.7	42	83	5	176	23	18	27	31	1.97
31497181--31497326	42	3.4	43	83	6	138	23	18	26	31	1.97
31509320--31509628	40	7.7	40	94	1	537	22	27	20	30	1.98
31509320--31509628	162	1.9	162	95	0	564	22	27	20	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297