genome.fa.s25.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  102  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36654511--36654594	42	2.0	42	92	0	141	44	14	10	30	1.79
36654623--36654666	19	2.4	18	88	7	70	45	15	2	36	1.59
36661297--36661346	19	2.7	18	93	3	82	46	14	2	38	1.56
36661681--36661802	47	2.6	47	77	3	129	37	26	13	22	1.91
36662583--36662631	22	2.1	24	85	7	66	26	0	51	22	1.49
36670289--36670325	16	2.3	16	95	0	65	8	27	5	59	1.48
36670302--36670355	23	2.4	23	82	14	60	7	24	7	61	1.49
36676773--36676887	54	2.1	54	86	0	167	34	17	13	34	1.88
36676781--36676886	27	3.9	27	82	4	142	35	15	12	36	1.84
36676866--36676955	27	3.3	27	84	3	83	40	16	16	26	1.90
36676784--36676913	54	2.4	53	79	5	145	36	16	13	33	1.88
36676893--36676958	27	2.4	27	92	5	107	39	16	19	24	1.92
36677091--36677173	27	3.1	27	76	10	91	22	21	19	36	1.95
36677098--36677196	27	3.7	27	75	11	87	22	22	19	36	1.95
36677363--36677459	33	2.9	33	83	3	97	25	19	23	30	1.98
36678772--36679045	40	6.8	40	80	1	262	18	27	15	37	1.92
36678912--36679013	20	5.1	20	64	0	60	14	28	19	37	1.91
36678772--36679056	121	2.4	120	83	4	342	19	28	15	37	1.92
36678772--36679045	80	3.4	79	83	2	296	18	27	15	37	1.92
36685599--36685902	48	6.4	48	84	8	417	36	7	25	29	1.85
36685599--36685866	138	1.9	138	97	0	509	36	7	26	29	1.84
36687571--36687782	40	5.3	40	93	0	352	25	20	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36687810--36687890	29	2.9	28	78	9	92	20	16	30	32	1.95
36687810--36687913	28	3.7	28	78	11	97	21	16	30	31	1.95
36691435--36691780	48	7.2	48	93	1	561	34	6	27	31	1.82
36691432--36691772	146	2.4	144	91	3	560	35	6	26	31	1.82
36693939--36694112	48	3.6	48	79	1	179	29	21	26	21	1.99
36696220--36696352	69	1.9	70	92	1	223	32	13	17	36	1.89
36697098--36697504	39	10.3	39	84	2	404	23	22	25	28	1.99
36697114--36697445	40	8.4	40	85	2	350	22	22	26	28	1.99
36697117--36697447	119	2.8	119	85	2	459	22	22	26	28	1.99
36697096--36697518	158	2.7	157	81	4	494	22	22	25	29	1.99
36702057--36702206	67	2.2	67	81	8	171	32	17	28	21	1.96
36702081--36702264	67	2.8	64	77	8	194	29	17	29	22	1.97
36704638--36704669	15	2.0	17	88	11	50	25	0	31	43	1.55
36707541--36707573	2	16.5	2	93	0	57	0	3	48	48	1.17
36707758--36707815	29	2.0	29	96	0	107	39	12	6	41	1.69
36711318--36711350	14	2.4	14	95	5	59	33	6	0	60	1.21
36714200--36714260	19	3.3	18	80	17	63	40	3	4	50	1.40
36714099--36714565	241	2.0	238	85	4	635	37	10	7	45	1.65
36719095--36719163	16	4.3	16	71	12	61	44	13	13	28	1.80
36719138--36719184	16	3.1	15	82	17	53	36	10	14	38	1.81
36719318--36719354	17	2.2	17	90	0	56	45	24	5	24	1.74
36738068--36738239	93	1.8	93	96	0	317	27	29	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36738061--36738236	46	3.8	46	79	12	216	28	29	21	20	1.98
36748080--36748147	27	2.5	27	83	4	84	35	25	23	16	1.95
36754261--36754298	16	2.4	16	95	0	67	55	0	23	21	1.44
36765322--36765456	29	4.8	28	77	7	137	25	31	14	28	1.94
36765322--36765456	57	2.4	56	81	5	137	25	31	14	28	1.94
36772113--36772302	55	3.5	55	76	7	226	38	20	20	20	1.93
36772053--36772365	53	5.8	53	73	7	263	38	18	22	20	1.93
36772062--36772353	108	2.7	108	94	1	496	38	18	22	20	1.94
36786090--36786123	16	2.1	16	100	0	68	32	23	29	14	1.94
36787785--36788122	40	8.5	40	97	1	617	23	23	27	26	2.00
36795966--36796223	40	6.5	40	95	2	423	23	23	27	25	2.00
36799309--36799531	47	4.8	47	80	8	242	23	30	18	27	1.98
36799307--36799575	140	1.9	141	86	6	386	24	29	18	27	1.98
36799309--36799575	94	2.8	93	79	9	276	24	29	18	27	1.98
36799912--36799968	30	1.9	30	88	0	87	26	24	14	35	1.93
36807329--36807416	45	2.0	45	97	0	167	40	15	13	29	1.86
36808040--36808220	24	7.5	24	87	2	247	32	32	13	21	1.92
36809949--36810173	49	4.5	49	88	2	306	25	18	27	28	1.98
36809942--36810173	99	2.3	100	86	2	315	25	18	28	28	1.98
36812632--36812665	17	2.0	17	94	0	59	38	5	0	55	1.24
36818944--36819126	24	7.6	24	91	2	278	32	33	14	20	1.92
36820450--36820483	17	2.0	17	94	0	59	38	5	0	55	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36820833--36821041	46	4.5	45	79	4	168	23	27	18	30	1.98
36820874--36821044	92	1.8	93	82	6	222	23	27	18	29	1.98
36829760--36829789	15	2.0	15	93	0	51	36	0	10	53	1.35
36837111--36837245	48	2.8	48	81	3	155	25	18	30	25	1.98
36837070--36837241	49	3.5	48	76	7	168	27	18	29	25	1.98
36840881--36840960	32	2.5	33	74	10	83	26	21	26	26	1.99
36860074--36860305	49	4.7	49	80	5	268	31	27	17	24	1.97
36862736--36862789	27	2.0	27	85	0	72	38	7	14	38	1.75
36863015--36863247	49	4.7	50	80	2	263	26	17	26	29	1.98
36863018--36863247	100	2.3	99	83	3	266	26	17	26	30	1.98
36865213--36865265	23	2.3	23	93	0	88	33	22	18	24	1.97
36865266--36865305	15	2.7	15	96	0	71	37	27	0	35	1.57
36868941--36869120	90	2.0	90	100	0	360	26	24	23	25	2.00
36869936--36870025	29	3.1	29	85	1	110	30	26	12	31	1.92
36877970--36878449	27	17.6	27	97	1	852	25	14	29	30	1.95
36877970--36878449	82	5.9	82	96	1	874	25	14	29	30	1.95
36885516--36885670	72	2.2	72	87	0	229	33	18	27	20	1.96
36889168--36889237	35	2.0	35	91	0	113	34	20	10	35	1.86
36914164--36914258	40	2.4	39	85	3	129	38	37	11	11	1.78
36923384--36923474	6	15.3	6	81	11	107	17	3	0	79	0.87
36923643--36923734	45	2.0	45	95	0	166	43	18	21	16	1.88
36926409--36926441	13	2.6	13	90	4	50	39	0	12	48	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36931062--36931243	47	3.8	47	80	2	184	23	28	21	26	1.99
36931845--36931907	31	2.1	31	84	3	83	33	23	6	36	1.80
36939531--36939584	25	2.1	27	83	10	69	33	5	1	59	1.31
36941849--36941925	38	2.0	38	97	0	145	29	9	15	45	1.77
36951520--36951567	25	1.9	25	82	0	60	12	14	25	47	1.79
36965294--36965371	39	2.0	39	100	0	156	20	35	15	28	1.93
36971492--36971565	29	2.6	29	86	4	96	25	31	16	27	1.96
36977451--36977517	28	2.4	28	89	0	98	29	25	11	32	1.92
36981495--36981520	13	2.0	13	100	0	52	38	15	7	38	1.76
36985961--36986004	19	2.4	18	84	3	61	22	25	0	52	1.48
36985970--36986004	12	3.0	12	91	4	54	22	22	0	54	1.45
36987408--36987583	46	3.8	46	79	12	216	20	21	29	28	1.98
36987405--36987576	93	1.8	93	96	0	317	20	21	29	27	1.98
36991412--36991479	34	2.0	34	97	0	127	33	8	22	35	1.85
36997423--36997951	265	2.0	265	98	0	1031	30	9	24	34	1.88
37002534--37002642	26	4.2	26	97	0	209	31	6	26	35	1.82
37016469--37016504	17	2.1	17	89	0	54	38	0	0	61	0.96
37016883--37016921	20	2.0	20	90	5	62	69	2	12	15	1.30
37017447--37017768	152	2.1	152	92	1	540	28	7	6	57	1.51
37017865--37017903	20	2.0	19	95	5	69	15	15	2	66	1.36
37022005--37022041	2	18.5	2	100	0	74	0	48	0	51	1.00
37024062--37024100	12	3.2	12	89	10	53	0	0	17	82	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37026094--37026386	150	2.0	150	100	0	586	40	12	12	33	1.81
37026339--37026582	88	2.8	89	79	8	239	33	13	9	43	1.76
37026547--37026708	84	1.9	84	92	2	272	30	11	9	48	1.71
37026744--37026917	77	2.2	78	79	7	183	29	13	12	44	1.81
37027353--37027442	40	2.2	40	90	3	137	31	25	20	23	1.98
37027456--37027556	40	2.5	40	80	0	112	32	18	21	26	1.97
37027812--37027862	14	3.6	14	76	5	50	19	0	31	49	1.49
37027812--37027863	21	2.5	21	84	6	61	21	0	30	48	1.51
37028075--37028101	14	1.9	14	100	0	54	7	0	55	37	1.28
37030097--37030184	43	2.0	43	95	0	158	50	9	9	31	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297