genome.fa.s25.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  130  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44847998--44848149	27	5.6	27	93	3	241	26	13	28	30	1.94
44847998--44848149	55	2.8	55	94	0	259	26	13	28	30	1.94
44852330--44852433	40	2.6	40	82	7	131	18	29	18	33	1.95
44853744--44853776	17	1.9	17	93	0	57	36	0	0	63	0.95
44857169--44857217	7	7.3	7	81	4	57	16	0	36	46	1.47
44858685--44858765	25	3.2	24	73	18	76	17	6	28	48	1.71
44859286--44859570	143	2.0	143	90	0	453	28	10	22	38	1.88
44860156--44863871	692	5.4	697	78	8	3368	36	12	13	37	1.82
44863095--44863120	8	3.2	8	100	0	52	61	0	0	38	0.96
44862205--44863822	712	2.3	711	83	5	1994	36	11	14	38	1.81
44867682--44867714	16	1.9	18	88	11	52	66	0	12	21	1.23
44868828--44868875	25	1.9	25	91	0	78	54	4	20	20	1.61
44870093--44870186	49	1.9	49	88	0	143	43	5	23	27	1.75
44875228--44875261	16	2.0	18	88	11	54	38	0	14	47	1.45
44875455--44875487	16	1.9	18	88	11	52	66	0	12	21	1.23
44875518--44875548	13	2.4	13	94	0	53	80	0	19	0	0.71
44876239--44876287	25	2.0	25	83	0	62	38	0	16	44	1.48
44876645--44876730	43	2.0	43	81	4	102	53	1	22	23	1.53
44878852--44879040	100	1.9	99	85	3	263	29	13	21	34	1.92
44894159--44894206	23	2.1	23	84	3	62	22	16	14	45	1.84
44895445--44895502	29	2.0	29	86	0	80	24	34	27	13	1.93
44896030--44896074	15	3.1	14	78	9	54	77	2	13	6	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44898936--44898961	11	2.4	11	100	0	52	30	0	19	50	1.48
44902791--44902873	32	2.6	32	86	3	114	31	12	20	36	1.89
44903195--44903259	31	2.1	32	82	8	80	30	13	10	44	1.78
44909023--44909083	31	2.0	30	84	6	79	52	13	0	34	1.40
44913920--44913971	18	2.9	17	80	11	50	73	3	5	17	1.19
44914792--44914843	23	2.3	23	89	0	77	48	11	1	38	1.51
44914853--44914877	12	2.1	12	100	0	50	48	8	12	32	1.69
44916188--44916213	11	2.4	11	100	0	52	80	0	19	0	0.71
44916307--44916371	23	2.8	23	97	0	121	47	15	0	36	1.46
44916307--44916371	13	5.5	13	70	20	61	47	15	0	36	1.46
44917246--44917287	4	10.5	4	100	0	84	26	0	0	73	0.83
44921630--44921675	23	2.0	23	91	0	74	47	13	0	39	1.42
44921691--44921715	12	2.1	12	100	0	50	48	8	12	32	1.69
44922697--44922727	9	3.4	9	90	0	53	25	12	22	38	1.90
44924244--44924290	20	2.3	20	96	0	85	29	4	10	55	1.53
44924672--44924713	6	7.0	6	78	10	50	38	0	0	61	0.96
44925624--44925686	32	2.0	31	100	0	117	31	12	9	44	1.75
44926530--44926683	76	2.0	77	93	3	267	25	18	25	29	1.98
44938474--44938549	31	2.5	31	84	0	98	27	17	7	47	1.75
44939101--44939134	18	1.9	17	94	5	59	47	2	0	50	1.16
44941187--44941247	29	2.1	29	90	0	95	27	13	14	44	1.83
44942670--44942817	24	6.2	24	75	6	104	37	36	10	16	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44942680--44942770	47	1.9	47	88	0	137	35	36	9	18	1.84
44944809--44944937	46	2.8	46	86	2	170	18	20	27	34	1.96
44946338--44946416	24	3.3	24	80	1	79	32	36	10	20	1.86
44948540--44948579	17	2.4	16	84	12	53	52	5	5	37	1.45
44948548--44948580	17	1.9	17	93	0	57	57	3	6	33	1.38
44951927--44952002	24	3.2	24	87	9	102	39	22	22	15	1.92
44954330--44954377	25	2.0	24	91	4	78	43	4	2	50	1.33
44957029--44957081	28	1.9	27	85	11	72	37	0	1	60	1.08
44976166--44976304	72	1.9	72	89	2	217	37	12	23	26	1.90
44983842--44984051	69	3.0	69	88	1	287	20	22	23	32	1.98
44984034--44984067	16	2.1	16	88	0	50	14	41	14	29	1.86
45004721--45004808	44	2.0	46	82	13	112	55	5	0	38	1.24
45011813--45011846	13	2.6	13	85	0	50	32	17	5	44	1.73
45011901--45011970	34	2.1	34	94	2	124	44	2	0	52	1.15
45013219--45013283	32	2.0	32	96	0	121	27	21	13	36	1.92
45016526--45016558	11	2.9	12	86	13	52	66	0	0	33	0.92
45027712--45027746	18	2.0	17	94	5	61	20	0	5	74	1.02
45027713--45027755	18	2.4	17	85	11	59	23	0	4	72	1.04
45027937--45027989	23	2.4	23	84	9	67	32	3	0	64	1.12
45027984--45028028	16	2.9	15	81	18	65	33	2	0	64	1.06
45034003--45034072	28	2.5	28	88	0	104	35	10	25	28	1.88
45053384--45053448	29	2.2	29	94	2	112	30	15	24	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45053745--45053770	9	2.9	9	100	0	52	42	23	0	34	1.54
45057554--45057612	24	2.5	24	88	0	91	44	0	25	30	1.55
45057678--45057742	20	3.4	19	69	14	62	35	4	15	44	1.67
45057653--45057765	37	3.1	37	94	1	192	32	4	15	47	1.65
45057665--45057759	17	5.2	17	65	14	55	33	3	13	49	1.58
45057766--45057902	9	14.6	9	89	6	193	21	9	32	36	1.86
45058008--45058073	29	2.3	27	78	16	71	28	12	27	31	1.92
45058851--45058963	20	5.7	20	71	10	70	39	6	13	40	1.69
45058846--45058989	40	3.6	39	75	12	114	39	8	11	40	1.72
45059031--45059090	20	3.0	21	80	4	70	40	11	10	38	1.75
45059033--45059117	40	2.1	40	80	8	93	42	14	8	35	1.75
45059100--45059158	20	3.0	20	73	9	57	42	20	6	30	1.78
45059053--45059179	40	3.2	40	72	11	102	43	14	7	35	1.72
45059236--45059308	37	2.0	37	97	0	137	24	5	20	49	1.70
45059397--45059459	20	3.2	19	75	8	63	33	11	11	44	1.75
45059479--45059558	20	4.1	20	73	3	72	40	11	13	35	1.81
45061984--45062265	109	2.6	109	84	4	345	31	18	15	34	1.92
45061998--45062297	108	2.8	109	85	3	356	31	20	16	32	1.94
45080851--45080891	20	2.0	20	90	0	64	41	4	24	29	1.75
45082025--45082103	41	1.9	41	92	0	131	22	24	32	20	1.97
45082183--45082338	82	1.9	81	85	3	215	23	17	32	26	1.97
45087411--45087470	26	2.6	22	78	19	61	16	13	6	63	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45090249--45090309	31	2.0	31	86	0	86	45	9	11	32	1.73
45094940--45095026	29	2.9	30	71	10	79	52	0	4	42	1.21
45096475--45096592	8	13.6	8	68	18	58	65	3	0	30	1.15
45096469--45096507	19	2.1	19	85	0	51	64	5	0	30	1.15
45096483--45096592	17	6.2	18	67	15	59	65	3	0	30	1.16
45096474--45096584	26	4.2	26	80	12	111	64	2	0	31	1.13
45096615--45096673	22	2.8	20	76	16	57	57	3	0	38	1.15
45096475--45096674	9	21.6	9	68	18	99	61	3	1	33	1.22
45096629--45096676	22	2.2	22	84	0	60	62	4	0	33	1.14
45100011--45100060	21	2.4	21	83	9	59	38	0	14	48	1.44
45100636--45100752	25	4.7	24	69	16	69	17	23	24	34	1.96
45100647--45100717	25	2.8	25	77	8	74	16	26	21	35	1.95
45103028--45103093	31	2.1	31	88	5	98	25	0	9	65	1.22
45103059--45103103	19	2.2	21	84	11	67	22	0	11	66	1.22
45103029--45103191	10	16.3	10	71	15	70	32	0	5	61	1.24
45103030--45103187	20	7.9	20	70	17	89	33	0	5	60	1.23
45103074--45103212	20	6.9	21	72	15	80	35	1	3	59	1.24
45103061--45103187	39	3.2	38	76	16	107	33	0	4	60	1.23
45112371--45112547	50	3.5	50	89	0	273	36	15	21	25	1.93
45112523--45112671	31	4.8	31	85	0	199	28	18	26	27	1.98
45112771--45112902	49	2.9	48	87	8	186	27	15	28	29	1.96
45112783--45112946	42	3.7	43	83	9	172	29	14	27	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45118010--45118068	30	2.0	30	93	0	100	33	16	27	22	1.95
45124200--45124224	10	2.5	10	100	0	50	12	36	24	28	1.91
45131011--45131054	23	1.9	23	100	0	88	18	40	22	18	1.91
45135550--45135590	20	2.0	20	86	9	57	14	9	58	17	1.62
45135620--45135709	46	2.0	46	100	0	180	4	11	41	43	1.60
45137450--45137489	21	1.9	21	90	10	64	65	0	2	32	1.06
45137674--45137711	3	12.7	3	94	0	67	68	2	0	28	1.03
45138266--45138312	14	3.3	14	80	14	60	82	4	2	10	0.88
45138262--45138307	23	2.0	23	87	8	67	80	2	4	13	0.95
45140502--45140542	22	2.0	20	85	9	55	70	4	9	14	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297