genome.fa.s25.2.7.7.80.10.50.1000.205.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  205  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69583082--69583304	118	1.9	119	81	11	271	24	27	21	26	2.00
69588464--69588529	27	2.4	27	92	0	105	33	13	16	36	1.88
69595020--69595190	93	1.8	93	92	2	290	21	21	29	28	1.98
69595023--69595195	46	3.7	47	78	13	205	21	20	28	29	1.98
69604768--69604792	6	4.2	6	100	0	50	84	0	0	16	0.63
69618510--69618607	39	2.5	39	94	0	169	23	28	23	24	2.00
69625158--69625251	39	2.4	39	92	0	152	25	27	23	23	2.00
69627853--69627901	20	2.5	20	80	16	57	63	14	6	16	1.49
69629379--69629432	27	2.0	27	96	0	99	27	20	14	37	1.92
69629388--69629446	27	2.2	27	84	6	75	25	22	18	33	1.96
69633763--69633843	43	1.9	42	87	7	119	27	22	22	28	1.99
69633744--69633856	43	2.6	42	79	9	115	28	23	21	26	1.99
69636141--69636190	26	1.9	26	87	0	73	14	24	28	34	1.93
69642190--69642237	24	2.0	24	91	0	78	43	4	35	16	1.67
69643397--69643438	18	2.4	17	88	8	57	21	19	38	21	1.94
69645123--69645204	41	2.0	40	92	2	137	36	21	26	13	1.91
69647840--69648015	46	3.8	46	78	12	207	21	20	29	28	1.98
69647837--69648008	93	1.8	93	94	0	308	21	20	29	27	1.98
69650657--69650719	19	3.3	19	79	2	72	42	20	26	9	1.83
69660458--69660714	55	4.8	54	76	10	210	36	17	24	21	1.95
69660465--69660665	108	1.8	110	87	4	300	34	18	25	21	1.96
69660904--69660934	16	1.9	16	93	0	53	41	0	22	35	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69662114--69662147	17	2.0	17	94	0	59	47	17	8	26	1.77
69666082--69666159	32	2.4	32	91	0	129	21	19	29	29	1.98
69667172--69667270	40	2.4	41	81	11	112	27	26	18	28	1.98
69670122--69670232	27	4.1	28	76	12	108	36	21	25	17	1.95
69672866--69673362	47	10.6	47	97	0	895	27	29	7	34	1.85
69680801--69680866	27	2.4	27	92	0	105	28	7	21	42	1.80
69684609--69684674	27	2.4	27	90	5	98	33	15	16	34	1.90
69699100--69699134	11	2.9	12	87	12	54	17	17	0	65	1.27
69699100--69699134	6	5.8	6	90	10	54	17	17	0	65	1.27
69702975--69703005	16	1.9	16	93	0	53	35	22	0	41	1.54
69702972--69703011	20	2.0	20	85	0	53	37	22	0	40	1.54
69703249--69703452	55	3.8	53	78	6	187	22	24	16	36	1.94
69704412--69704479	33	2.1	33	91	0	109	48	13	10	27	1.74
69709600--69709643	22	2.0	22	90	0	70	29	22	2	45	1.65
69715767--69715809	23	1.9	22	85	4	59	18	4	23	53	1.63
69719565--69719601	17	2.2	17	90	0	56	21	16	10	51	1.74
69722332--69722427	28	3.4	29	70	9	81	28	14	32	25	1.95
69727436--69727499	24	2.6	25	92	2	103	29	25	17	28	1.97
69732163--69732206	19	2.4	19	85	7	56	50	0	9	40	1.34
69736258--69736291	17	2.0	17	94	0	59	29	20	17	32	1.96
69740807--69741048	48	5.1	48	79	11	273	28	20	23	27	1.99
69747125--69747154	9	3.3	9	95	0	51	23	23	0	53	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69748583--69748751	93	1.8	93	88	2	259	30	21	22	26	1.99
69748591--69748773	48	3.9	48	73	12	171	28	21	23	26	1.99
69750799--69750931	69	1.9	68	98	1	257	33	22	21	23	1.98
69752636--69752772	71	1.9	71	100	0	274	41	13	13	32	1.82
69753289--69753790	47	10.6	47	89	4	756	33	8	29	28	1.86
69753289--69753790	96	5.3	96	97	1	917	33	8	29	28	1.86
69758553--69758833	40	7.1	40	87	2	386	25	21	27	25	1.99
69770873--69771090	40	5.5	40	90	2	307	22	23	27	25	2.00
69773017--69773066	21	2.4	21	75	15	50	62	6	10	22	1.48
69780210--69780263	27	2.0	27	85	0	72	38	7	14	38	1.75
69798433--69798476	19	2.4	19	85	7	56	50	0	9	40	1.34
69806796--69806893	49	2.0	49	94	4	171	41	9	22	26	1.83
69809174--69809255	26	3.1	26	94	1	137	32	20	12	34	1.90
69809452--69809607	55	2.9	55	85	6	201	44	17	8	29	1.78
69809174--69809607	27	16.1	27	79	7	224	39	19	9	30	1.85
69809871--69809994	41	3.0	41	85	0	176	23	21	27	27	1.99
69810135--69810199	22	3.0	22	82	8	78	23	24	20	32	1.98
69813071--69813495	40	10.6	40	82	7	524	24	24	27	23	2.00
69813071--69813495	80	5.3	80	95	2	705	24	24	27	23	2.00
69813071--69813495	120	3.5	120	88	2	631	24	24	27	23	2.00
69821399--69821713	40	7.6	40	81	11	366	26	23	26	24	2.00
69821595--69821696	50	2.0	50	92	3	170	28	23	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69822668--69823160	163	3.0	163	98	0	959	35	16	18	29	1.93
69830106--69830326	40	5.6	41	81	9	255	25	23	26	24	2.00
69832159--69832254	24	3.8	24	80	10	120	36	15	22	25	1.94
69832151--69832264	52	2.2	52	88	0	165	34	14	22	28	1.94
69832290--69832436	50	2.9	51	93	3	253	31	14	26	27	1.95
69839758--69840017	27	9.6	27	90	0	358	39	20	8	31	1.83
69839758--69840070	81	3.9	81	81	8	332	39	21	8	30	1.84
69839758--69840070	54	5.8	54	85	3	337	39	21	8	30	1.84
69839758--69840124	27	13.6	27	81	4	289	38	20	8	31	1.84
69840110--69840340	27	8.6	27	88	0	300	35	18	19	26	1.95
69840785--69840849	22	3.0	22	80	8	78	20	23	23	33	1.97
69841007--69841108	27	3.8	26	84	5	105	17	23	20	38	1.93
69841245--69841317	31	2.4	31	88	0	101	17	15	15	52	1.76
69841267--69841326	6	9.8	6	74	16	52	18	16	16	48	1.82
69841248--69841317	25	2.8	25	83	14	83	17	15	15	51	1.77
69846441--69846590	41	3.7	41	75	10	121	22	18	27	32	1.97
69850862--69850989	40	3.2	40	82	5	161	27	26	21	24	1.99
69852977--69853074	27	3.5	28	88	5	128	32	28	13	25	1.93
69861510--69861732	79	2.8	78	83	7	272	24	27	22	25	2.00
69861510--69861732	39	5.7	40	87	6	280	24	27	22	25	2.00
69869502--69869724	79	2.8	78	83	7	263	24	27	22	25	2.00
69869502--69869724	39	5.7	40	87	6	271	24	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69872643--69873558	40	22.9	40	97	0	1735	25	29	22	22	1.99
69877187--69877289	51	2.0	51	98	0	197	36	7	27	28	1.84
69878488--69878648	81	2.0	81	98	0	313	34	24	19	21	1.96
69879436--69879659	112	2.0	112	99	0	439	30	16	32	20	1.95
69884020--69884198	88	2.0	88	98	0	349	38	9	19	32	1.84
69884823--69884907	44	1.9	44	85	4	118	28	12	21	37	1.90
69896572--69896865	159	1.9	159	87	2	439	31	9	18	40	1.82
69910976--69911074	49	2.0	49	98	0	189	36	16	10	37	1.82
69916066--69916118	20	2.5	22	81	6	65	26	20	16	35	1.94
69919438--69919519	30	2.8	29	76	10	94	21	25	13	39	1.90
69928735--69928774	20	2.0	21	85	5	55	42	0	20	37	1.52
69936727--69936771	20	2.2	20	84	4	54	44	13	0	42	1.43
69938825--69938869	20	2.2	20	96	0	81	15	28	28	26	1.96
69948930--69948973	22	2.0	22	95	0	79	25	36	4	34	1.76
69953402--69953538	51	2.9	49	76	12	135	31	29	16	22	1.96
69953462--69953545	43	2.0	43	90	0	132	27	32	20	20	1.97
69955759--69955800	16	2.5	17	84	11	59	21	16	0	61	1.34
69956819--69956849	4	8.0	4	92	7	55	77	0	22	0	0.77
69959559--69959629	36	2.0	36	88	0	106	47	25	14	12	1.79
69963976--69964191	40	5.4	40	88	3	287	24	29	23	22	1.99
69971949--69972000	18	2.9	18	72	11	61	28	17	11	42	1.84
69975490--69975526	18	2.1	18	100	0	74	51	10	10	27	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69976593--69976634	21	2.0	21	85	0	57	2	21	14	61	1.43
69977343--69977573	48	4.9	48	78	7	249	27	20	23	28	1.99
69989166--69989214	19	2.8	17	76	11	53	34	0	2	63	1.06
69989937--69989970	7	4.9	7	96	0	59	8	14	2	73	1.19
69989937--69989978	21	2.0	21	86	9	59	9	16	2	71	1.23
70005416--70005453	20	1.9	20	89	10	60	39	2	7	50	1.46
70011325--70011357	15	2.3	15	89	5	50	27	6	3	63	1.32
70013275--70013512	87	2.7	87	87	3	329	37	18	14	29	1.91
70018878--70018911	12	3.1	11	91	8	52	29	2	0	67	1.05
70018759--70019110	177	2.0	176	94	0	623	26	11	15	46	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297