Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  149  of  297  ( 35593 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51383574--51383632
29
2.0
30
93
3
102
57
8
5
28
1.50
51386992--51387025
15
2.5
13
90
9
50
41
2
0
55
1.15
51387100--51387211
56
2.0
56
92
0
188
34
8
17
38
1.82
51396047--51396081
17
2.1
17
89
5
54
48
8
0
42
1.33
51399146--51399306
52
3.2
49
77
12
150
26
15
26
32
1.96
51401703--51401728
2
13.0
2
100
0
52
50
0
0
50
1.00
51402127--51402205
31
2.6
31
80
6
81
26
15
8
49
1.73
51403925--51404085
84
1.9
85
87
7
238
31
29
8
30
1.87
51406283--51406307
7
3.6
7
100
0
50
12
0
0
88
0.53
51410407--51410456
21
2.4
22
80
10
59
58
2
2
38
1.21
51410992--51411046
29
1.9
29
82
10
69
32
0
5
61
1.19
51414881--51415089
115
1.8
115
95
0
382
31
23
11
33
1.91
51419340--51419367
2
14.0
2
100
0
56
50
0
50
0
1.00
51420882--51420956
21
3.2
24
62
27
61
33
14
10
41
1.81
51420883--51420975
46
2.0
46
100
0
186
32
15
10
41
1.81
51421034--51421071
20
2.0
20
89
5
60
21
5
0
73
1.02
51422144--51422211
31
2.2
31
97
2
129
36
8
20
33
1.84
51423562--51423647
30
2.9
30
73
11
79
45
0
3
51
1.18
51423558--51423654
34
2.9
32
76
16
83
47
0
3
49
1.17
51427974--51428840
120
7.2
120
96
0
1540
43
1
5
48
1.36
51428131--51428324
57
3.1
69
60
27
165
43
1
6
48
1.38
51428189--51428223
18
2.0
17
94
5
61
42
0
0
57
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51428549--51428583
18
2.0
17
88
5
52
45
0
0
54
0.99
51428669--51428703
18
2.0
17
88
5
52
45
0
0
54
0.99
51428789--51428823
18
2.0
17
88
5
52
45
0
0
54
0.99
51428988--51429078
45
2.0
45
85
2
121
37
28
6
27
1.82
51429059--51429127
16
4.2
16
92
3
120
36
37
1
24
1.65
51429059--51429127
33
2.1
32
94
2
120
36
37
1
24
1.65
51434529--51434560
15
2.1
15
94
0
55
18
12
15
53
1.73
51437640--51437683
21
2.1
21
84
12
56
31
6
2
59
1.36
51437907--51438009
32
3.3
30
75
14
91
54
1
1
41
1.22
51440730--51440779
25
2.0
24
81
14
57
48
2
6
44
1.39
51440799--51440875
31
2.4
32
82
4
102
45
6
6
41
1.56
51442975--51443269
118
2.5
117
83
5
378
43
17
17
21
1.88
51444793--51444823
3
10.3
3
100
0
62
67
0
32
0
0.91
51449522--51449585
31
2.1
31
87
0
92
37
4
7
50
1.52
51452710--51452821
18
6.4
18
74
10
97
43
12
16
27
1.83
51452722--51452784
16
3.8
16
81
6
63
49
11
12
26
1.74
51452687--51452822
18
7.9
17
72
9
80
41
11
14
32
1.81
51452771--51452829
18
3.3
18
73
21
61
33
11
13
40
1.81
51452771--51452868
36
2.7
36
80
12
96
32
12
12
42
1.79
51452771--51452857
19
4.7
19
69
17
67
34
12
13
39
1.83
51453435--51453461
11
2.5
11
100
0
54
22
7
0
70
1.12
51453459--51453512
10
5.2
10
80
14
56
0
22
0
77
0.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51453457--51453509
14
3.8
13
85
14
63
0
20
0
79
0.74
51454081--51454182
30
3.4
29
83
5
132
45
3
21
29
1.70
51454178--51454212
14
2.4
15
90
4
54
28
0
2
68
1.04
51459981--51460037
27
2.1
27
93
0
96
24
19
10
45
1.81
51462703--51462750
11
4.4
11
89
0
69
2
56
0
41
1.11
51473658--51473691
6
5.7
6
100
0
68
14
17
17
50
1.79
51474785--51474828
22
2.0
22
100
0
88
40
13
13
31
1.84
51479744--51479795
24
2.2
24
92
0
86
26
13
13
46
1.80
51481040--51481204
51
3.2
51
94
0
294
32
13
24
29
1.93
51482969--51483024
28
2.0
29
86
10
80
35
7
8
48
1.62
51483777--51483830
6
8.7
6
80
8
63
48
14
0
37
1.45
51483777--51483830
18
2.8
20
83
11
76
48
14
0
37
1.45
51483777--51483843
20
3.5
19
80
15
68
46
14
1
37
1.55
51483895--51483941
6
7.8
6
97
0
76
46
31
4
17
1.67
51483695--51484032
119
2.9
115
86
5
464
47
17
5
28
1.71
51486791--51486986
66
3.0
65
84
4
250
35
27
11
25
1.91
51487382--51487433
21
2.7
20
83
16
65
34
0
0
65
0.93
51487391--51487433
22
2.0
22
91
8
72
34
0
0
65
0.93
51487588--51487636
16
2.8
18
71
22
50
30
0
2
67
1.02
51488879--51488948
29
2.3
29
88
9
97
32
10
15
41
1.81
51488904--51488967
29
2.2
29
86
8
85
31
10
12
45
1.77
51489153--51489211
31
2.0
30
83
6
75
45
11
6
35
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51489148--51489214
31
2.3
27
76
14
71
43
10
7
38
1.67
51497971--51498008
18
2.1
19
90
5
60
31
18
21
28
1.97
51505773--51505812
11
3.6
11
90
10
64
90
10
0
0
0.47
51507061--51507387
44
7.6
42
75
10
245
30
20
21
27
1.98
51507063--51507354
87
3.4
82
76
10
259
29
20
22
27
1.99
51507064--51507485
218
2.0
214
81
6
494
30
21
22
25
1.98
51509266--51509298
3
11.0
3
93
0
57
33
3
0
63
1.10
51509535--51509566
15
2.1
15
94
0
55
18
3
3
75
1.08
51510929--51511161
77
3.0
76
78
10
240
34
18
17
29
1.94
51510961--51511183
77
2.9
78
84
7
258
34
18
17
28
1.94
51511254--51511288
14
2.5
14
90
0
52
57
5
20
17
1.60
51511085--51511360
91
3.0
91
88
3
378
33
18
21
26
1.96
51511279--51511498
76
2.9
73
84
5
244
30
22
18
28
1.97
51523095--51523137
11
3.9
11
81
0
50
60
4
0
34
1.17
51528859--51528918
22
2.7
22
82
5
68
60
13
16
10
1.59
51529737--51529785
21
2.3
23
80
16
61
22
6
30
40
1.78
51538730--51538883
66
2.3
65
83
9
188
62
1
7
28
1.32
51538716--51538989
73
3.9
73
78
10
250
60
2
7
28
1.38
51541056--51541133
27
2.9
27
81
11
88
17
21
21
38
1.93
51541099--51541152
27
2.0
27
85
0
72
14
29
22
33
1.94
51542422--51542450
12
2.3
13
94
5
51
27
0
17
55
1.42
51546771--51546906
46
3.0
47
91
2
197
22
23
14
39
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51551050--51551113
31
2.1
31
88
2
94
6
4
15
73
1.20
51555795--51555824
13
2.2
14
94
5
53
26
0
16
56
1.40
51563384--51563432
18
2.9
17
78
6
55
46
0
4
48
1.20
51565789--51565827
15
2.6
14
88
11
60
25
0
2
71
0.98
51565794--51565827
15
2.3
15
95
5
61
26
0
0
73
0.83
51567289--51567407
47
2.4
49
86
4
161
42
12
4
40
1.62
51567483--51567518
3
12.0
3
100
0
72
66
0
0
33
0.92
51570630--51570689
30
2.0
30
100
0
120
43
10
30
16
1.81
51571895--51572014
47
2.5
50
87
4
165
40
13
3
43
1.60
51575557--51575587
3
10.3
3
100
0
62
67
0
0
32
0.91
51577254--51577377
61
2.1
59
82
8
144
35
17
25
21
1.95
51580408--51580456
21
2.3
21
86
10
64
10
16
6
67
1.39
51582805--51582844
22
2.0
21
85
14
57
52
5
7
35
1.51
51584855--51584937
24
3.5
23
67
17
62
36
9
6
48
1.61
51584842--51584946
47
2.2
47
94
0
192
38
12
6
42
1.69
51593986--51594035
25
2.0
25
84
7
66
70
20
2
8
1.23
51595546--51595764
72
3.0
72
92
0
348
24
18
35
21
1.96
51600814--51600870
27
2.1
28
83
3
71
45
5
3
45
1.43
51608954--51609011
10
6.6
9
73
16
50
32
0
0
67
0.91
51609236--51609273
19
2.0
19
100
0
76
36
36
15
10
1.82
51613213--51613383
51
3.3
51
69
10
134
35
21
14
29
1.92
51613226--51613473
103
2.4
103
81
6
306
35
20
17
26
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51617194--51617266
34
2.1
34
100
0
146
17
23
12
46
1.82
51619382--51619436
28
1.9
28
85
10
76
49
0
9
41
1.34
51619934--51619971
17
2.3
16
90
4
58
71
0
2
26
1.00
51621817--51621841
12
2.1
12
100
0
50
24
28
0
48
1.52
51622770--51622823
28
2.2
23
70
29
56
37
22
9
31
1.86
51622776--51622832
28
2.0
28
100
0
114
35
21
12
31
1.90
51623435--51623460
13
2.0
13
100
0
52
53
0
0
46
1.00
51623694--51624730
519
2.0
519
87
5
1495
35
13
13
37
1.84
51628854--51628916
31
2.0
31
90
0
99
34
14
9
41
1.78
51632932--51632990
28
2.1
28
93
0
100
25
10
22
42
1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297