Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  199  of  297  ( 35593 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67482540--67482735
40
4.8
40
85
5
266
25
21
28
23
1.99
67499113--67499284
93
1.8
93
90
2
274
30
29
19
20
1.97
67499114--67499280
46
3.6
45
75
10
167
30
29
19
20
1.97
67504875--67505025
42
3.6
42
76
6
135
28
25
15
29
1.96
67507055--67507223
27
6.2
27
84
4
196
30
26
15
27
1.96
67507067--67507222
82
1.9
81
88
3
233
29
28
15
26
1.96
67512449--67512556
42
2.6
42
86
4
139
30
26
14
27
1.95
67520616--67520673
20
2.9
20
86
0
80
46
5
27
20
1.72
67530268--67530330
31
2.0
31
90
0
99
25
23
14
36
1.93
67530524--67530597
25
3.0
24
84
9
96
27
21
20
31
1.98
67530646--67530712
20
3.3
20
91
0
107
32
22
10
34
1.88
67532452--67532604
28
5.5
28
84
1
182
28
11
30
28
1.92
67534836--67534964
47
2.7
47
83
4
145
27
30
8
34
1.86
67540199--67540239
21
2.0
21
90
0
64
36
53
4
4
1.44
67559398--67559430
12
2.8
12
86
4
50
51
9
3
36
1.49
67559461--67559508
20
2.3
21
85
3
62
33
20
25
20
1.97
67562850--67562895
10
4.5
10
86
5
65
13
23
21
41
1.88
67562847--67562899
21
2.6
21
91
5
83
13
20
20
45
1.84
67569199--67569268
5
12.7
6
78
19
57
72
0
18
8
1.09
67569223--67569258
15
2.3
15
95
4
63
72
0
19
8
1.10
67569205--67569262
21
2.8
21
91
0
98
72
0
20
6
1.07
67569193--67569271
27
2.9
27
81
12
92
73
0
18
7
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67572192--67572246
16
3.4
16
77
5
56
50
18
10
20
1.76
67574028--67574080
27
2.0
27
84
0
70
41
9
7
41
1.66
67575276--67575320
20
2.2
20
96
0
81
11
28
37
22
1.88
67581982--67582089
38
2.8
39
85
1
137
40
11
12
36
1.78
67583819--67583989
93
1.8
93
89
2
272
29
28
20
22
1.98
67583812--67584035
46
4.8
46
78
6
247
29
27
20
22
1.99
67584238--67584274
18
2.1
18
100
0
74
56
0
5
37
1.22
67596920--67597005
40
2.2
40
93
2
147
23
23
27
25
2.00
67604796--67604976
48
3.8
48
89
0
254
32
7
29
29
1.85
67605021--67605123
37
2.8
37
92
0
179
23
21
31
24
1.99
67609441--67609611
46
3.7
46
78
13
206
30
28
19
22
1.98
67609446--67609616
93
1.8
93
92
0
288
30
28
19
21
1.97
67611999--67612169
93
1.8
93
89
2
272
29
30
19
19
1.97
67611994--67612166
46
3.8
45
73
14
156
30
30
19
20
1.97
67613153--67613305
68
2.2
68
80
4
166
18
21
15
44
1.86
67617084--67617113
12
2.5
12
100
0
60
30
0
13
56
1.37
67619612--67619698
27
3.2
26
75
6
93
42
14
12
29
1.83
67620097--67620200
27
3.9
27
77
0
82
20
21
19
39
1.93
67621429--67621478
23
2.1
24
96
3
93
28
20
20
32
1.97
67621528--67621583
11
5.5
11
71
16
57
32
19
12
35
1.89
67621528--67621587
20
3.0
20
97
0
111
33
20
11
35
1.88
67628881--67629026
24
6.1
24
92
2
242
28
20
19
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67628881--67629026
49
3.0
49
93
3
244
28
20
19
30
1.97
67629076--67629142
20
3.3
20
93
0
116
32
20
11
34
1.90
67629076--67629131
11
5.5
11
71
16
57
32
19
12
35
1.89
67634083--67634150
27
2.5
27
88
4
93
39
20
11
27
1.88
67640746--67640923
40
4.5
40
90
2
270
23
24
28
23
1.99
67644185--67644241
24
2.4
24
94
5
98
31
14
5
49
1.65
67644556--67644798
100
2.5
99
83
5
296
28
26
18
26
1.98
67646264--67646340
27
2.9
27
86
3
102
38
16
16
27
1.91
67646993--67647032
19
2.0
22
85
14
59
45
22
5
27
1.73
67648121--67648168
7
6.6
7
83
7
60
18
0
33
47
1.49
67648121--67648168
22
2.2
22
92
7
80
18
0
33
47
1.49
67648121--67648167
15
3.1
15
87
6
60
17
0
34
48
1.47
67648741--67648840
39
2.6
39
88
0
137
31
2
20
47
1.61
67653300--67653413
43
2.6
45
83
8
130
24
17
26
31
1.97
67654996--67655073
27
2.9
27
86
0
93
28
16
17
37
1.92
67655040--67655486
27
16.7
27
80
7
439
30
9
20
38
1.85
67655040--67655486
54
8.3
54
82
5
487
30
9
20
38
1.85
67655040--67655477
81
5.4
81
82
4
503
30
9
20
38
1.85
67655801--67655892
28
3.3
28
89
0
130
28
35
14
21
1.92
67658361--67658467
42
2.5
43
83
1
144
26
17
22
33
1.96
67658553--67658616
32
2.0
32
96
0
119
40
7
18
32
1.80
67674747--67674778
16
2.0
16
93
0
55
59
12
3
25
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67677669--67677917
26
9.6
26
100
0
498
31
4
26
38
1.75
67689748--67689805
29
2.0
29
93
0
98
43
29
0
27
1.55
67689754--67689801
15
3.3
15
73
5
53
43
27
0
29
1.55
67690143--67690230
30
2.9
30
71
6
88
28
28
15
27
1.96
67691975--67692024
12
3.9
12
86
7
64
70
10
4
16
1.30
67692002--67692041
18
2.4
17
87
8
55
75
5
7
12
1.18
67692953--67693009
11
5.5
10
73
22
55
77
1
17
3
1.00
67692953--67693009
5
11.0
5
77
17
55
77
1
17
3
1.00
67692953--67693009
16
3.7
14
80
17
60
77
1
17
3
1.00
67693057--67693087
12
2.6
12
100
0
62
45
12
16
25
1.83
67693090--67693114
12
2.1
12
100
0
50
76
0
16
8
1.02
67693084--67693139
18
3.1
18
76
5
51
69
3
19
7
1.27
67693090--67693171
30
2.7
31
81
5
105
64
1
21
12
1.33
67697033--67697072
21
2.0
20
85
14
55
35
12
22
30
1.91
67702067--67702126
29
2.1
29
87
0
84
41
26
1
30
1.65
67702342--67702375
18
2.0
17
88
11
52
76
5
5
11
1.14
67702984--67703034
21
2.4
21
75
18
52
35
7
25
31
1.85
67704323--67704381
29
2.0
29
96
0
109
30
20
18
30
1.96
67709482--67709549
34
2.0
34
100
0
136
38
5
23
32
1.79
67726591--67726693
27
3.8
27
90
0
152
41
21
14
22
1.89
67732588--67732766
43
4.2
42
84
5
191
27
14
22
35
1.93
67733021--67733155
68
2.0
68
98
0
261
28
7
19
45
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67740737--67740880
42
3.4
42
79
9
123
25
15
25
34
1.95
67740727--67740880
43
3.6
43
75
13
129
24
15
25
34
1.95
67744898--67745252
47
7.4
47
93
1
539
29
30
8
32
1.87
67744898--67745250
49
7.4
49
93
1
551
29
30
8
32
1.87
67753529--67753760
56
4.1
56
98
0
446
22
21
9
45
1.81
67767379--67767511
51
2.6
51
96
0
239
39
11
18
30
1.86
67801637--67801817
47
3.9
47
78
8
174
29
17
28
24
1.97
67801598--67801770
94
1.8
94
87
0
256
28
19
27
24
1.98
67801602--67801818
94
2.3
94
81
4
242
29
18
27
24
1.98
67810633--67810894
46
5.6
47
81
9
265
29
19
29
21
1.98
67810630--67810894
93
2.8
92
80
11
263
28
19
29
21
1.98
67818334--67818455
42
2.9
42
80
4
129
27
22
17
33
1.96
67818334--67818455
43
2.9
42
80
2
136
27
22
17
33
1.96
67818510--67819039
290
1.8
290
92
0
909
37
18
10
33
1.84
67820380--67820438
29
2.0
31
80
12
70
37
1
20
40
1.63
67824107--67824198
47
2.0
47
95
0
166
33
8
29
28
1.87
67827586--67827631
24
1.9
24
86
0
65
73
0
10
15
1.08
67828228--67828265
15
2.5
15
95
4
67
10
2
0
86
0.66
67828229--67828264
7
4.9
7
87
12
54
11
2
0
86
0.68
67828228--67828265
8
4.9
8
87
6
60
10
2
0
86
0.66
67852533--67852593
24
2.5
24
86
5
79
34
29
16
19
1.94
67854526--67854580
27
2.0
27
85
0
74
38
14
21
25
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67858101--67858257
40
4.0
40
85
4
196
23
21
28
26
1.99
67858101--67858257
79
2.0
78
83
6
201
23
21
28
26
1.99
67863023--67863204
40
4.6
40
88
0
249
21
22
29
26
1.99
67870872--67871128
40
6.5
40
87
2
324
22
22
28
26
1.99
67873686--67873739
28
1.9
28
84
0
72
50
5
0
44
1.25
67874558--67874619
28
2.2
28
97
0
115
43
17
19
19
1.88
67880463--67880520
29
2.0
29
100
0
116
34
17
17
31
1.93
67886193--67886370
27
6.6
27
84
3
205
29
28
15
26
1.96
67886214--67886369
82
1.9
81
88
3
233
29
28
15
26
1.96
67893116--67893629
254
2.0
255
97
0
985
25
21
19
34
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297