genome.fa.s24.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  100  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31225968--31226206	127	1.9	128	86	4	349	29	22	20	28	1.98
31227127--31227173	23	2.0	23	84	16	60	14	6	8	70	1.32
31230362--31230411	13	3.9	13	77	12	59	30	6	26	38	1.80
31231414--31231452	17	2.3	16	83	12	51	69	0	2	28	1.02
31231528--31231567	19	2.0	21	90	9	66	30	12	0	57	1.36
31231535--31231597	29	2.1	30	94	2	110	31	7	0	60	1.26
31231535--31231613	10	8.3	9	74	14	61	27	7	0	64	1.20
31231746--31231831	37	2.3	37	78	7	95	36	2	1	60	1.17
31231903--31232052	80	1.9	75	81	6	174	32	8	19	39	1.82
31234091--31234236	73	2.0	73	100	0	292	34	10	26	28	1.90
31243330--31243434	55	1.9	55	88	3	158	34	11	18	36	1.86
31245695--31245768	10	7.7	10	70	22	52	22	1	2	72	1.04
31245695--31245746	19	2.9	18	86	8	70	19	0	3	76	0.93
31247419--31247460	22	1.9	22	95	0	75	54	2	9	33	1.46
31248052--31248081	3	10.0	3	100	0	60	33	0	0	66	0.92
31250700--31250743	19	2.3	19	88	0	61	56	27	2	13	1.49
31256330--31256462	40	3.4	40	73	9	121	30	24	19	25	1.98
31256621--31256667	24	2.0	24	84	16	62	51	17	0	31	1.46
31257449--31257480	8	4.0	8	100	0	64	50	0	0	50	1.00
31258425--31258463	6	6.3	6	96	3	69	15	15	0	69	1.20
31258437--31258565	57	2.3	57	86	6	174	25	17	6	50	1.69
31265455--31265512	30	2.0	29	86	10	82	55	13	5	25	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31265518--31265610	44	2.1	44	87	0	132	31	3	18	47	1.64
31271896--31271924	3	10.0	3	92	7	51	31	0	0	68	0.89
31272766--31272808	20	2.1	21	95	4	79	27	0	4	67	1.10
31274374--31274647	147	1.9	147	82	0	350	31	18	20	29	1.97
31277104--31277240	69	2.0	69	84	5	179	35	6	4	54	1.47
31279900--31280019	64	1.9	64	92	1	206	30	13	19	36	1.90
31284176--31284201	13	2.0	13	100	0	52	53	0	15	30	1.42
31298559--31298629	26	2.7	26	91	4	108	45	8	1	45	1.42
31298686--31298748	27	2.3	27	83	5	74	30	30	25	14	1.95
31298893--31298931	19	2.0	21	85	10	55	23	0	10	66	1.22
31298992--31299044	3	17.7	3	100	0	106	0	0	32	67	0.91
31299230--31299266	12	3.1	12	92	0	56	21	0	16	62	1.33
31299823--31299867	18	2.5	18	96	0	81	42	13	40	4	1.64
31304238--31304687	159	2.8	158	72	15	359	30	12	8	49	1.70
31305569--31305706	4	34.0	4	76	16	99	0	31	0	68	0.90
31305577--31305706	29	4.4	29	72	20	101	0	32	0	67	0.91
31305570--31305685	31	3.7	33	76	15	122	0	31	0	68	0.90
31305511--31305709	70	2.9	67	79	12	199	0	32	0	67	0.95
31305748--31305814	27	2.5	27	87	0	98	16	23	29	29	1.96
31305872--31305925	27	2.0	27	96	0	99	33	0	9	57	1.31
31325011--31325140	65	2.0	65	100	0	260	36	15	12	35	1.85
31325276--31325318	21	2.1	21	91	4	70	41	2	9	46	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31325584--31325626	17	2.5	16	81	7	50	60	4	0	34	1.17
31332478--31332530	20	2.7	20	81	0	61	37	20	5	35	1.77
31332680--31332770	23	3.8	24	80	12	73	31	15	25	27	1.95
31332702--31332770	23	3.0	23	85	4	77	33	14	26	26	1.94
31334189--31334281	29	3.2	29	81	6	116	20	27	13	37	1.91
31334200--31334286	29	3.0	29	91	0	138	18	31	12	37	1.88
31337112--31337163	7	7.4	7	100	0	104	71	0	0	28	0.87
31339584--31339631	3	15.7	3	82	4	60	37	0	2	60	1.09
31339934--31340203	131	2.1	129	94	2	470	40	4	8	46	1.56
31340065--31340377	146	2.1	147	86	4	425	39	4	11	44	1.60
31354497--31354568	26	2.7	27	91	4	110	43	6	0	50	1.29
31354625--31354691	27	2.5	27	90	0	107	22	29	29	17	1.97
31354772--31354808	11	3.5	11	88	7	58	70	0	29	0	0.88
31354835--31354873	19	2.0	21	85	10	55	23	0	10	66	1.22
31354919--31354962	3	14.3	3	85	4	61	29	0	6	63	1.20
31355225--31355255	12	2.6	12	94	0	53	19	0	19	61	1.35
31361609--31361722	29	4.1	29	68	22	75	0	30	0	69	0.89
31361602--31361687	34	2.5	33	77	22	90	0	31	0	68	0.90
31361629--31361777	27	5.5	28	72	15	111	0	30	0	69	0.89
31361671--31361816	4	36.0	4	72	15	79	0	32	0	67	0.91
31361605--31361769	82	2.0	84	87	9	239	0	30	0	69	0.88
31361720--31361825	38	2.7	38	82	15	128	0	36	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31361631--31361773	41	3.3	45	71	22	126	0	30	0	69	0.88
31361670--31361776	48	2.2	48	80	3	126	0	28	0	71	0.87
31361787--31361825	16	2.5	16	83	4	53	0	38	0	61	0.96
31361849--31361915	27	2.5	27	95	0	116	14	26	29	28	1.96
31361983--31362052	26	2.6	27	90	4	115	51	0	8	40	1.33
31364104--31364135	11	2.9	11	90	0	55	34	12	0	53	1.39
31367167--31367292	28	4.5	28	70	15	82	28	23	16	30	1.96
31372247--31372319	36	2.0	36	81	5	85	30	5	24	39	1.78
31379616--31379739	44	2.8	44	83	6	142	58	5	26	8	1.50
31384405--31384737	27	12.3	27	83	2	348	43	19	18	18	1.88
31386121--31386218	28	3.5	26	77	12	97	30	13	27	28	1.94
31387166--31387239	25	3.1	25	72	18	75	28	13	14	43	1.84
31388098--31388175	39	2.0	39	92	0	129	21	10	30	37	1.87
31389956--31390547	47	12.6	47	91	0	864	33	10	30	25	1.89
31390666--31390745	37	2.2	37	86	4	108	23	17	31	27	1.97
31392542--31393203	40	16.6	40	96	0	1218	25	22	27	24	2.00
31395163--31395240	39	2.0	39	92	0	129	21	10	30	37	1.87
31397021--31397565	47	11.6	47	91	1	788	33	10	30	25	1.89
31397684--31397763	37	2.2	37	86	4	108	23	17	31	27	1.97
31399102--31399227	22	5.5	22	70	16	85	26	15	16	41	1.88
31399117--31399228	46	2.4	47	83	7	138	28	14	16	40	1.88
31399102--31399227	47	2.7	46	81	4	146	26	15	16	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31399863--31399947	28	3.0	28	84	3	109	27	22	22	28	1.99
31402604--31402770	27	6.2	27	83	4	196	44	19	18	16	1.86
31402604--31402783	54	3.4	54	84	4	231	43	20	17	18	1.88
31402605--31402755	80	1.9	80	84	5	207	45	20	17	16	1.86
31403009--31403058	26	2.0	25	84	4	64	18	20	22	40	1.92
31403160--31403242	28	3.0	28	85	3	114	25	21	24	28	1.99
31407102--31407174	30	2.4	29	80	10	85	26	24	13	35	1.93
31409552--31409682	12	10.9	12	70	12	63	67	3	19	9	1.35
31409574--31409678	12	8.6	12	75	14	72	70	4	18	6	1.27
31409578--31409678	18	5.4	18	74	5	76	70	4	17	6	1.28
31409574--31409678	6	17.2	6	68	6	59	70	4	18	6	1.27
31409664--31409712	18	2.7	18	78	12	64	63	0	18	18	1.32
31417031--31417056	13	2.0	13	100	0	52	38	15	15	30	1.88
31421711--31421822	43	2.6	43	71	20	99	26	29	18	25	1.98
31439654--31439719	27	2.4	27	82	0	78	25	24	24	25	2.00
31443781--31443847	27	2.5	27	85	0	80	28	23	19	28	1.98
31443953--31444008	27	2.1	27	86	6	78	33	28	16	21	1.95
31446948--31447015	29	2.3	29	85	5	93	27	30	13	27	1.94
31447117--31447194	29	2.7	29	84	11	106	28	30	15	25	1.96
31446838--31447189	173	2.0	173	88	1	517	31	24	13	30	1.93
31455073--31455140	29	2.3	29	85	5	93	27	30	13	27	1.94
31455242--31455320	29	2.7	30	82	13	110	29	30	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31462806--31463060	44	5.6	43	71	14	118	28	17	19	34	1.95
31462782--31463076	142	2.1	142	91	1	475	27	17	19	35	1.94
31462983--31463085	44	2.3	44	83	3	127	25	25	20	29	1.99
31481040--31481087	17	2.8	16	84	9	51	56	2	0	41	1.11
31487787--31488381	44	13.5	43	66	15	225	31	17	24	26	1.97
31487777--31488413	132	4.8	132	92	0	1006	31	18	24	26	1.97
31490196--31490289	12	8.0	12	69	16	54	40	2	3	54	1.28
31490198--31490228	16	1.9	16	93	0	53	38	3	0	58	1.15
31490433--31490463	8	3.9	8	95	0	53	25	0	6	67	1.14
31508662--31508686	13	1.9	13	100	0	50	32	8	24	36	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240