genome.fa.s24.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  133  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41315750--41315827	29	2.7	27	74	18	77	60	1	0	38	1.05
41315760--41315807	21	2.4	21	86	6	64	62	2	0	35	1.07
41315750--41315827	28	2.7	27	78	18	86	60	1	0	38	1.05
41318177--41318222	18	2.8	16	84	12	65	73	0	4	21	1.00
41318177--41318229	17	3.1	17	86	7	72	75	0	5	18	0.99
41320830--41320974	39	3.7	39	82	0	182	42	21	5	30	1.75
41332802--41332842	18	2.3	18	83	4	57	14	43	26	14	1.84
41332828--41332898	32	2.2	32	82	0	79	21	36	25	16	1.94
41333515--41333542	6	4.7	6	100	0	56	85	0	0	14	0.59
41338868--41338940	38	1.9	38	97	0	137	38	5	12	43	1.65
41339668--41339718	21	2.5	21	83	3	68	27	11	25	35	1.91
41342503--41342536	7	4.9	7	92	0	50	44	5	0	50	1.26
41344155--41344229	23	3.3	22	78	12	80	37	21	18	22	1.94
41347633--41347659	6	4.5	6	100	0	54	33	29	18	18	1.95
41353056--41353083	12	2.3	12	100	0	56	50	0	14	35	1.43
41358101--41358177	25	3.1	25	82	0	100	24	15	18	41	1.89
41360008--41360067	29	2.1	29	100	0	120	28	0	20	51	1.47
41366959--41366999	21	1.9	22	85	14	59	43	7	2	46	1.44
41370958--41370982	13	1.9	13	100	0	50	52	0	0	48	1.00
41373329--41373361	9	3.8	9	88	8	50	18	0	12	69	1.18
41373501--41373556	29	1.9	30	85	7	80	44	0	1	53	1.11
41373547--41373580	15	2.2	16	89	5	52	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41373546--41373583	16	2.4	17	82	13	53	65	0	0	34	0.93
41374281--41374321	22	1.9	21	85	5	55	41	4	0	53	1.22
41379716--41380075	47	7.6	47	90	1	504	32	9	29	28	1.88
41380194--41380295	37	2.8	37	93	0	168	25	18	29	26	1.98
41396401--41396461	25	2.4	25	83	0	77	22	22	21	32	1.98
41424905--41425428	128	4.1	128	94	2	881	34	19	13	32	1.90
41434245--41434280	17	2.1	17	100	0	72	50	16	11	22	1.77
41453064--41453107	17	2.6	17	83	16	56	15	4	2	77	1.04
41457403--41457549	20	7.3	20	81	0	132	38	23	27	10	1.88
41470965--41471003	21	1.9	19	90	10	60	30	5	7	56	1.49
41477556--41477635	28	2.6	31	79	16	87	25	25	23	26	2.00
41477967--41478026	27	2.2	27	87	0	84	18	13	30	38	1.89
41477976--41478092	27	4.3	27	83	6	112	17	15	23	44	1.86
41477981--41478092	54	2.1	54	84	0	143	16	15	22	45	1.85
41479152--41479268	54	2.2	54	84	3	155	20	17	19	41	1.90
41479152--41479268	27	4.3	27	81	0	126	20	17	19	41	1.90
41482851--41482891	19	2.2	19	91	8	66	21	43	0	34	1.53
41485744--41485776	12	2.5	14	90	9	52	72	6	15	6	1.24
41485754--41485803	21	2.6	19	87	9	66	74	2	20	4	1.08
41491943--41491995	19	2.8	18	83	11	54	16	0	5	77	0.96
41494715--41495562	422	2.0	422	96	0	1543	34	18	12	33	1.89
41505484--41505649	27	6.1	27	87	0	224	40	24	16	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41506013--41506203	28	6.8	28	90	0	292	22	18	25	33	1.97
41507806--41508035	40	5.8	40	84	7	267	26	21	26	24	2.00
41511169--41511235	28	2.4	28	87	9	93	50	11	7	29	1.66
41514299--41514395	6	15.7	6	68	10	61	70	3	19	7	1.25
41514299--41514353	18	3.1	18	86	0	83	70	5	18	5	1.26
41514350--41514382	14	2.2	16	89	10	52	69	0	24	6	1.10
41514383--41514417	18	1.9	18	88	11	54	57	0	20	22	1.41
41516355--41516411	19	2.9	19	80	10	62	21	22	17	38	1.93
41520152--41520186	16	2.2	16	90	10	54	51	2	17	28	1.59
41522445--41522480	18	2.0	18	94	0	63	52	16	5	25	1.65
41524422--41524479	31	1.9	29	86	13	82	55	5	3	36	1.39
41524469--41524538	37	1.9	36	82	8	88	52	5	0	41	1.25
41525813--41525847	17	2.1	17	94	0	61	71	8	5	14	1.29
41527822--41527858	17	2.3	17	86	9	51	59	2	8	29	1.40
41548479--41548519	17	2.5	16	88	7	64	26	0	19	53	1.45
41548490--41548528	19	2.2	17	86	9	51	23	2	20	53	1.57
41549265--41549403	46	3.0	46	93	0	224	34	8	27	29	1.87
41551384--41551813	40	10.8	40	94	1	682	23	20	29	26	1.99
41555385--41555793	47	8.7	47	91	5	636	31	8	30	30	1.86
41555912--41555990	37	2.1	37	90	0	122	24	18	31	25	1.98
41560456--41560485	15	2.0	15	100	0	60	40	6	33	20	1.78
41567191--41567218	8	3.5	8	100	0	56	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41567581--41567605	13	1.9	13	100	0	50	40	16	4	40	1.67
41569214--41569346	40	3.3	40	84	4	126	29	19	25	25	1.99
41569232--41569346	40	2.9	40	88	1	169	30	20	24	24	1.99
41569405--41569777	41	9.1	41	84	2	446	22	18	28	30	1.97
41569898--41569924	13	2.1	13	100	0	54	33	7	22	37	1.82
41569978--41570031	7	7.6	7	81	4	63	18	0	31	50	1.48
41570069--41570126	8	8.0	7	81	9	55	15	0	34	50	1.45
41570071--41570104	8	4.2	8	96	0	59	11	0	32	55	1.36
41569923--41570126	14	14.2	14	70	12	94	19	1	33	45	1.61
41570434--41570481	7	6.9	7	81	13	55	22	0	45	31	1.53
41570432--41570481	14	3.6	14	86	5	66	22	0	48	30	1.51
41570434--41570482	21	2.3	20	86	10	71	22	0	46	30	1.52
41570470--41570512	22	2.0	22	85	0	59	30	2	32	34	1.71
41571789--41571834	23	2.0	23	100	0	92	21	21	17	39	1.93
41572078--41572126	25	1.9	26	87	4	73	51	4	6	38	1.46
41572141--41572231	46	2.0	46	86	2	130	49	14	1	35	1.51
41577189--41578051	120	7.2	120	97	0	1636	43	1	6	48	1.39
41577760--41577794	18	2.0	17	88	5	52	45	0	0	54	0.99
41578000--41578034	18	2.0	17	88	5	52	45	0	0	54	0.99
41578270--41578338	16	4.2	16	92	3	120	36	37	1	24	1.65
41578270--41578338	33	2.1	32	94	2	120	36	37	1	24	1.65
41581036--41581122	43	2.0	43	84	8	115	34	10	11	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41581399--41581675	146	1.9	145	81	5	335	27	15	27	29	1.96
41581532--41581715	43	4.3	43	84	2	226	26	15	28	29	1.96
41584326--41584386	25	2.6	22	76	10	59	42	0	3	54	1.17
41584362--41584400	16	2.6	15	84	11	53	43	0	0	56	0.99
41587827--41587963	66	2.1	66	97	0	256	28	18	12	40	1.86
41587955--41588009	28	2.0	28	89	7	85	56	1	9	32	1.41
41588019--41588081	21	3.0	21	76	6	65	68	0	17	14	1.22
41589269--41589313	21	2.2	20	84	11	56	6	13	0	80	0.91
41594838--41594875	9	4.3	9	90	6	60	81	10	0	7	0.87
41594838--41594875	17	2.2	18	90	4	51	81	10	0	7	0.87
41597066--41597203	43	3.2	43	68	15	129	26	22	26	24	2.00
41597021--41597260	44	5.4	44	69	13	161	29	23	23	23	1.99
41597020--41597349	88	3.8	87	86	6	400	29	23	23	23	1.99
41597346--41598333	44	22.6	43	69	10	348	30	18	22	28	1.97
41597464--41597901	221	2.0	221	90	0	689	29	19	22	28	1.98
41597346--41598030	129	5.2	129	74	9	537	30	19	22	28	1.98
41597994--41598106	45	2.5	46	89	1	174	28	20	21	30	1.98
41598081--41598364	129	2.2	129	91	1	444	29	19	20	29	1.97
41597508--41598387	349	2.5	350	97	0	1665	29	19	22	28	1.98
41599146--41599196	21	2.5	20	76	20	52	7	17	0	74	1.05
41599847--41599876	3	10.0	3	100	0	60	33	0	0	66	0.92
41604110--41604135	13	2.0	13	100	0	52	38	7	7	46	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41605686--41605922	51	4.6	51	79	10	284	24	16	27	30	1.97
41605686--41605924	104	2.3	102	84	7	297	24	16	28	30	1.97
41605846--41605926	26	3.2	26	61	22	62	24	14	28	32	1.95
41609056--41609109	22	2.5	20	91	8	81	1	22	1	74	1.02
41609056--41609109	21	2.5	20	88	8	72	1	22	1	74	1.02
41614946--41614987	21	2.0	21	95	0	75	33	26	4	35	1.77
41618806--41618860	21	2.7	19	73	13	56	65	0	21	12	1.26
41620667--41620808	51	2.8	50	88	2	214	28	14	13	42	1.84
41633696--41633788	45	2.1	45	97	0	177	51	3	18	26	1.61
41633707--41633779	24	3.2	24	62	18	64	49	4	17	28	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240