genome.fa.s24.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  45  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15537732--15537776	21	2.1	21	100	0	90	24	28	20	26	1.99
15540686--15540744	28	2.1	29	84	9	77	40	1	1	55	1.20
15541007--15541033	13	2.1	13	100	0	54	48	14	0	37	1.45
15545255--15545294	20	2.0	20	90	0	62	27	10	12	50	1.72
15545240--15545306	34	1.9	35	87	3	100	32	8	11	46	1.72
15545497--15545590	25	3.7	25	67	13	66	50	7	7	35	1.59
15545473--15545578	51	2.1	51	98	0	203	48	9	4	37	1.57
15545884--15546105	111	2.0	111	99	0	435	39	15	12	33	1.84
15550551--15550575	8	3.1	8	100	0	50	12	24	24	40	1.88
15551672--15551751	41	1.9	42	84	2	108	22	26	33	17	1.96
15554893--15554929	10	3.8	10	82	17	51	54	0	0	45	1.00
15554888--15554940	18	2.8	18	88	8	70	60	0	0	39	0.97
15554925--15554964	20	2.0	21	85	5	55	70	0	5	25	1.08
15554907--15554979	35	2.0	37	86	10	105	64	0	5	30	1.16
15554925--15554986	16	3.6	16	74	20	54	66	0	6	27	1.16
15555372--15555407	15	2.3	17	86	13	51	30	5	2	61	1.33
15563757--15563866	57	1.9	58	84	1	150	28	19	9	43	1.81
15566300--15566449	41	3.6	41	89	2	230	22	28	20	28	1.99
15568764--15568811	25	2.0	25	83	4	62	14	25	20	39	1.91
15568868--15568951	25	3.3	26	79	11	86	16	23	22	36	1.94
15578156--15578194	19	2.1	19	85	4	53	30	20	0	48	1.50
15578367--15578500	23	6.0	23	88	2	175	38	23	20	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15598135--15598183	24	2.0	25	96	4	91	71	0	0	28	0.86
15603351--15603404	19	2.8	19	88	0	81	38	9	14	37	1.79
15603351--15603430	19	3.9	21	82	8	78	37	7	16	38	1.77
15603864--15603891	1	28.0	1	100	0	56	0	0	0	100	0.00
15608493--15608520	14	2.0	14	100	0	56	92	0	7	0	0.37
15609701--15610161	132	3.5	132	93	1	789	28	17	24	29	1.97
15610513--15610585	19	3.8	19	88	0	119	39	8	15	36	1.77
15610564--15610621	22	2.7	23	78	7	59	37	5	15	41	1.70
15616563--15617091	197	2.7	195	86	3	711	40	17	15	27	1.89
15622625--15622655	15	2.1	15	100	0	62	67	0	6	25	1.14
15626421--15626453	15	2.2	15	94	0	57	30	48	3	18	1.63
15629775--15629878	22	4.4	23	82	9	113	40	20	24	15	1.90
15631893--15631951	31	1.9	31	86	6	84	50	3	8	37	1.49
15632336--15632378	22	2.0	22	85	0	59	55	9	13	20	1.66
15634012--15634048	19	2.0	19	94	5	67	32	21	8	37	1.83
15653776--15653885	57	1.9	58	84	1	150	28	19	9	43	1.81
15656317--15656466	41	3.6	41	89	2	230	22	28	20	28	1.99
15658782--15658829	25	2.0	25	83	4	62	14	25	20	39	1.91
15658904--15658976	26	2.8	26	81	2	94	15	26	24	34	1.94
15668222--15668261	19	2.1	19	90	0	62	30	20	0	50	1.49
15668434--15668567	23	6.0	23	88	2	175	38	23	20	18	1.94
15679592--15679886	148	2.0	150	91	1	486	40	11	7	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15689066--15689125	30	2.0	31	86	3	86	45	10	21	23	1.82
15692821--15692862	22	1.9	22	85	0	57	40	16	4	38	1.70
15698842--15698889	15	3.3	15	70	5	53	37	2	2	58	1.22
15709628--15709669	21	2.0	21	90	0	66	19	0	4	76	0.96
15710481--15710525	15	3.0	15	83	6	56	80	0	2	17	0.82
15710473--15710525	24	2.2	23	86	6	70	79	0	1	18	0.83
15711818--15711865	25	2.0	24	83	4	60	33	20	6	39	1.78
15718250--15718276	13	2.1	13	100	0	54	37	0	0	62	0.95
15731211--15731247	16	2.3	16	85	0	56	72	0	5	21	1.04
15742357--15742408	19	2.7	19	85	5	61	55	1	1	40	1.22
15742364--15742436	18	4.1	18	74	6	60	57	4	1	36	1.26
15744405--15744462	31	1.9	30	86	10	82	36	12	10	41	1.76
15749718--15749765	23	2.1	22	84	7	60	14	14	0	70	1.16
15751483--15751567	32	2.7	30	79	15	100	61	4	0	34	1.17
15751483--15751600	62	1.9	62	81	10	143	61	4	1	32	1.25
15751598--15751668	20	3.7	20	76	14	67	63	2	5	28	1.31
15751615--15751672	10	6.1	10	72	23	54	65	1	3	29	1.19
15751617--15751672	9	6.0	9	76	15	51	66	1	3	28	1.19
15752411--15752456	16	2.9	16	81	12	58	19	2	0	78	0.86
15759040--15759104	31	2.1	31	88	0	94	40	13	7	38	1.74
15759903--15759938	2	18.0	2	94	0	63	2	50	0	47	1.15
15766286--15766335	17	2.7	20	78	18	70	10	0	44	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15770925--15770974	17	2.7	20	78	18	70	10	0	44	46	1.37
15774935--15774998	24	2.5	26	82	10	69	57	0	0	42	0.98
15774968--15775011	8	5.6	8	83	5	54	65	0	0	34	0.93
15775469--15775515	21	2.2	21	85	7	60	25	6	4	63	1.36
15788740--15788786	23	2.1	23	88	7	71	65	2	0	31	1.04
15789355--15789431	39	2.0	40	81	2	93	37	22	23	16	1.94
15789456--15789728	41	7.0	41	84	9	327	19	19	28	32	1.96
15789491--15789549	30	2.0	30	96	0	109	10	16	30	42	1.82
15793022--15793797	23	34.0	23	76	10	583	30	5	23	40	1.77
15793117--15793693	114	5.1	114	80	7	337	30	5	24	39	1.79
15793140--15793768	250	2.5	249	84	7	896	30	5	24	39	1.79
15794700--15794834	43	3.1	43	92	0	216	18	17	33	31	1.94
15794700--15794864	86	1.9	87	86	1	233	21	16	31	29	1.96
15794826--15794945	52	2.4	51	79	10	138	20	21	26	31	1.98
15794853--15794955	52	2.0	52	96	0	188	15	26	27	31	1.96
15794959--15794999	22	1.9	21	85	5	55	39	29	21	9	1.86
15800995--15801041	25	2.0	24	87	8	69	36	10	17	36	1.84
15803979--15804020	22	2.0	22	86	13	61	42	0	14	42	1.45
15804908--15804988	25	3.3	25	78	11	78	18	29	20	30	1.97
15807192--15807225	18	1.9	17	94	5	59	41	0	2	55	1.15
15812050--15812083	18	1.9	18	88	5	52	47	26	8	17	1.77
15812781--15812911	39	3.4	38	77	6	129	41	23	6	28	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15815622--15815646	12	2.1	12	100	0	50	52	0	24	24	1.48
15815009--15816822	905	2.0	907	96	0	3308	43	7	17	32	1.76
15819879--15819947	28	2.4	28	81	13	79	44	1	7	46	1.40
15819879--15819947	27	2.4	29	81	13	81	44	1	7	46	1.40
15831143--15831201	30	2.0	30	96	0	109	37	15	10	37	1.81
15835787--15835869	30	2.8	30	100	0	166	39	18	9	32	1.83
15842662--15842692	16	1.9	16	100	0	62	48	0	0	51	1.00
15844540--15844564	6	4.2	6	100	0	50	32	32	36	0	1.58
15854622--15854680	29	2.0	29	100	0	118	52	16	6	23	1.68
15855910--15855934	12	2.1	12	100	0	50	32	0	8	60	1.26
15856472--15856512	22	1.9	21	85	5	55	41	0	0	58	0.98
15857618--15857642	7	3.6	7	100	0	50	28	0	12	60	1.32
15858743--15858798	25	2.3	25	87	3	87	44	0	10	44	1.38
15858931--15858960	14	2.2	14	94	5	53	50	30	0	20	1.49
15858832--15859252	23	18.2	23	78	10	403	48	22	0	28	1.54
15859402--15859440	15	2.6	15	100	0	78	53	28	0	17	1.44
15859425--15859586	23	7.1	23	78	13	174	50	23	0	26	1.50
15859423--15859586	45	3.6	46	79	12	176	50	23	0	26	1.50
15859425--15859586	68	2.4	68	84	10	206	50	23	0	26	1.50
15859093--15859708	334	1.8	335	96	0	1144	44	17	2	34	1.64
15859581--15859824	116	2.1	116	93	1	418	38	8	7	45	1.63
15862834--15863182	123	2.8	123	86	0	518	33	21	16	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15867380--15867423	12	3.8	12	82	14	56	56	0	0	43	0.99
15871585--15871729	41	3.5	41	93	1	238	28	20	28	22	1.98
15876113--15876152	21	1.9	21	84	0	53	55	0	12	32	1.38
15876455--15876507	19	2.7	19	85	2	61	9	9	3	77	1.11
15889696--15889733	18	2.2	17	86	9	51	21	7	2	68	1.28
15891382--15892020	17	36.1	18	70	14	248	45	9	12	32	1.74
15891430--15892019	35	16.6	33	76	11	401	46	9	12	31	1.73
15891443--15892020	88	6.5	87	78	7	468	46	9	12	31	1.74
15891443--15891898	71	6.4	68	77	10	373	47	10	12	30	1.74
15891441--15892008	17	32.1	17	74	9	413	46	9	12	31	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240