genome.fa.s24.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  135  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41922926--41923270	47	7.3	47	91	1	539	28	29	8	32	1.87
41922926--41923273	143	2.5	143	91	1	549	28	29	8	32	1.87
41924115--41924155	20	2.0	20	100	0	82	31	14	0	53	1.41
41931449--41931757	161	1.9	161	87	2	451	28	17	15	38	1.91
41943493--41943537	20	2.2	21	80	11	58	24	33	15	26	1.95
41943502--41943546	20	2.2	20	92	0	72	24	26	15	33	1.95
41943685--41943733	23	2.2	22	82	7	55	28	0	6	65	1.16
41959408--41959559	27	5.6	27	92	3	232	26	14	28	30	1.95
41959408--41959559	55	2.8	55	93	0	250	26	14	28	30	1.95
41972315--41972354	21	2.0	20	85	14	55	5	15	5	75	1.15
41975342--41975390	20	2.5	20	75	0	53	12	32	2	53	1.50
41977538--41977576	20	2.1	18	85	9	51	28	15	2	53	1.55
41977537--41977576	21	2.0	20	86	13	57	27	15	2	55	1.53
41977615--41977646	16	2.0	17	88	11	50	3	3	6	87	0.73
41978446--41978517	30	2.4	30	85	0	90	30	8	34	26	1.86
41979907--41979932	10	2.6	10	100	0	52	23	7	0	69	1.14
41983683--41983732	18	2.5	20	87	9	68	74	2	20	4	1.08
41994026--41994064	16	2.4	16	87	8	53	74	5	10	10	1.21
41997037--41997110	37	2.0	37	100	0	148	21	43	8	27	1.80
41999309--41999347	18	2.2	17	82	13	51	5	17	2	74	1.12
42002233--42002285	23	2.3	23	87	9	72	32	13	9	45	1.75
42003583--42003628	13	3.5	13	88	5	65	76	2	6	15	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42006788--42006885	45	2.2	45	96	0	178	66	4	15	14	1.40
42007784--42007823	12	3.3	12	78	0	53	72	2	15	10	1.21
42007858--42007919	33	1.9	32	86	3	88	59	0	22	17	1.37
42013739--42013813	33	2.2	34	90	2	116	42	12	8	37	1.71
42015572--42015610	18	2.2	17	82	13	51	5	17	2	74	1.12
42034652--42034684	17	1.9	17	100	0	66	21	12	36	30	1.90
42036393--42036449	30	2.0	28	86	6	78	38	19	7	35	1.79
42040423--42040459	18	2.0	19	89	5	58	75	2	16	5	1.10
42042219--42042290	33	2.1	34	87	2	101	40	8	12	38	1.73
42044382--42044420	18	2.2	17	82	13	51	5	17	2	74	1.12
42053444--42053476	18	1.9	17	88	11	50	39	24	9	27	1.85
42055658--42055758	29	3.5	29	89	1	150	26	14	28	29	1.95
42057967--42058021	28	2.0	28	85	7	76	49	10	9	30	1.69
42070096--42070131	15	2.4	15	100	0	72	36	8	11	44	1.70
42075972--42076001	14	2.1	15	93	6	53	36	30	6	26	1.82
42076708--42076847	37	4.0	38	76	18	176	3	27	10	59	1.46
42076746--42076803	28	2.1	28	93	0	98	1	31	6	60	1.33
42076671--42076840	66	2.7	65	91	5	276	3	28	9	58	1.46
42077394--42077427	7	4.9	7	88	0	50	2	11	26	58	1.47
42081967--42082099	69	1.9	70	90	1	214	32	14	16	36	1.89
42083563--42084124	47	12.0	47	89	0	836	31	11	29	27	1.92
42083684--42083759	23	3.2	25	62	24	63	28	13	34	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42084014--42084088	23	3.1	25	63	24	61	29	13	33	24	1.93
42084297--42084401	37	2.8	37	92	0	165	21	20	31	25	1.98
42087139--42087309	15	11.6	15	67	22	60	43	1	4	51	1.28
42087014--42087425	120	3.4	119	95	1	718	43	1	4	50	1.33
42087387--42087428	15	2.7	16	82	14	52	45	0	2	52	1.13
42087378--42087419	15	2.9	15	82	10	52	47	0	0	52	1.00
42087573--42087660	44	2.0	43	85	10	117	34	26	4	35	1.77
42087647--42087688	16	2.6	16	96	0	75	19	35	7	38	1.79
42093783--42093822	18	2.2	18	86	8	55	20	0	12	67	1.22
42093824--42093856	11	2.9	12	86	13	52	66	0	0	33	0.92
42094117--42094168	21	2.5	21	87	0	68	32	5	28	32	1.81
42097542--42097586	7	6.0	7	85	14	63	13	0	6	80	0.91
42097794--42098304	30	17.1	30	93	2	834	38	9	0	51	1.38
42098429--42098517	42	2.1	42	83	8	110	32	29	14	23	1.94
42098656--42098723	35	2.0	35	82	8	86	55	2	1	39	1.24
42099173--42099223	23	2.2	23	82	0	66	37	7	27	27	1.84
42100096--42100121	12	2.2	12	100	0	52	7	15	30	46	1.74
42100227--42100483	41	6.2	41	91	1	408	25	20	23	30	1.99
42100767--42100808	21	2.0	21	86	4	59	28	0	21	50	1.49
42100862--42100893	14	2.2	15	94	5	57	31	0	31	37	1.58
42100969--42101142	82	2.1	82	83	1	222	26	1	25	46	1.62
42100994--42101155	82	2.0	82	88	2	245	25	1	27	45	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42101823--42101885	27	2.3	27	81	5	74	66	11	3	19	1.36
42106847--42106892	21	2.2	21	88	7	67	26	2	47	23	1.63
42108638--42108755	41	2.9	41	83	1	148	27	25	22	23	2.00
42108803--42108925	40	3.1	40	80	5	151	23	18	20	37	1.94
42108810--42108942	40	3.3	40	74	16	116	24	20	21	34	1.96
42108931--42108956	12	2.2	12	100	0	52	46	23	15	15	1.83
42108975--42109144	30	6.0	30	85	11	259	39	10	0	50	1.37
42108975--42109128	82	1.9	84	94	2	276	38	10	0	51	1.36
42109624--42109652	15	1.9	15	100	0	58	34	20	17	27	1.95
42114819--42115245	33	12.4	33	67	24	149	31	27	19	20	1.97
42114836--42114982	43	3.7	42	74	21	161	32	26	17	23	1.97
42114809--42115019	76	2.8	76	93	0	350	33	27	17	21	1.96
42114995--42115046	27	1.9	27	96	0	95	28	30	21	19	1.97
42114918--42115247	101	3.2	102	92	1	527	31	27	20	20	1.97
42117058--42117097	19	2.1	19	90	0	62	60	0	17	22	1.37
42119859--42119954	39	2.5	39	91	0	147	10	59	2	28	1.42
42119859--42119990	39	3.4	39	84	2	113	11	56	1	30	1.43
42119895--42120002	39	2.8	39	81	0	126	10	57	1	30	1.42
42119931--42120018	39	2.2	39	82	6	97	13	55	1	29	1.46
42123417--42123466	18	2.5	20	87	9	68	72	4	20	4	1.18
42125210--42125289	33	2.4	34	81	6	103	36	6	12	45	1.67
42150657--42150751	25	3.8	25	80	1	111	31	21	22	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42150670--42150779	50	2.2	50	83	0	130	31	20	20	26	1.98
42150686--42150779	25	3.8	24	80	5	98	34	19	21	25	1.96
42150650--42150786	25	5.5	25	75	7	91	32	20	21	25	1.98
42171168--42171249	39	2.1	40	97	2	157	29	19	18	32	1.95
42178235--42178737	47	10.6	47	92	2	808	33	8	29	28	1.87
42178235--42178737	96	5.3	96	94	1	847	33	8	29	28	1.87
42178856--42178957	37	2.8	37	93	0	168	25	18	29	26	1.98
42181522--42181663	40	3.6	40	76	12	114	23	23	28	23	1.99
42188105--42188188	40	2.1	40	100	0	168	41	9	29	19	1.83
42189234--42189333	28	3.2	32	71	20	84	29	24	24	23	1.99
42189670--42189866	27	7.4	26	79	5	153	14	20	20	44	1.86
42189670--42189866	54	3.7	53	79	4	182	14	20	20	44	1.86
42198296--42198361	33	2.0	33	84	0	87	30	24	24	21	1.99
42198322--42198383	28	2.2	28	91	2	99	33	24	22	19	1.97
42203285--42203471	27	6.9	27	88	1	250	35	20	21	21	1.96
42203455--42203530	25	3.0	26	86	7	95	25	15	21	38	1.92
42203657--42203713	26	2.2	26	80	3	60	24	22	17	35	1.95
42203723--42203849	32	4.0	32	84	0	164	22	22	19	36	1.95
42203724--42203849	64	2.0	64	88	0	189	22	22	19	36	1.95
42207367--42207602	50	4.7	50	87	0	328	26	21	31	20	1.98
42208229--42208470	50	4.8	50	83	1	306	25	22	30	21	1.99
42222097--42222215	47	2.6	45	82	5	143	30	8	32	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42224447--42224843	40	9.9	40	89	1	598	24	22	27	24	2.00
42228256--42228902	47	13.6	47	93	1	1033	32	8	29	29	1.87
42228256--42228902	239	2.7	240	96	0	1174	32	8	29	29	1.87
42245015--42245069	20	2.8	20	88	0	83	29	16	29	25	1.97
42247590--42247623	14	2.4	14	90	9	52	14	2	5	76	1.09
42247587--42247611	13	1.9	13	100	0	50	24	0	4	72	1.02
42248892--42248998	56	1.9	56	84	3	144	25	20	13	41	1.88
42249631--42249677	20	2.3	20	92	0	76	31	17	29	21	1.96
42263440--42263496	19	2.9	19	80	12	62	43	24	1	29	1.64
42263593--42263679	27	3.2	27	81	0	111	44	17	16	21	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240