genome.fa.s24.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  180  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55616692--55616834	41	3.5	40	86	5	173	27	23	16	32	1.96
55618612--55618651	18	2.2	18	90	0	62	52	15	12	20	1.74
55618612--55618643	6	5.3	6	100	0	64	50	15	15	18	1.79
55619001--55619037	18	2.1	18	94	0	65	24	13	21	40	1.89
55620306--55620347	19	2.3	18	84	12	50	38	28	19	14	1.90
55622576--55622628	23	2.2	24	81	18	67	18	5	45	30	1.73
55624822--55624850	14	2.0	15	93	6	51	17	0	0	82	0.66
55641370--55641550	66	2.7	66	82	4	213	34	25	11	28	1.90
55642361--55642426	25	2.6	25	97	0	123	40	9	13	36	1.76
55646450--55646491	21	2.0	22	85	4	59	21	40	14	23	1.90
55654079--55654200	58	2.1	58	92	0	199	40	21	9	28	1.85
55656736--55656771	6	6.3	6	87	12	58	13	36	30	19	1.91
55656741--55656771	16	1.9	16	100	0	62	12	35	32	19	1.90
55657400--55657424	8	3.1	8	100	0	50	24	0	0	76	0.80
55677716--55677775	25	2.3	26	83	8	70	60	1	5	33	1.29
55677919--55677960	14	3.1	14	86	6	61	78	4	0	16	0.91
55680476--55680520	18	2.5	18	79	13	56	20	28	2	48	1.61
55681179--55681218	3	13.3	3	94	0	71	32	2	0	65	1.06
55685116--55685666	9	61.7	9	80	6	613	34	1	15	48	1.55
55685132--55685673	90	6.0	90	93	2	842	34	1	15	48	1.55
55689676--55689710	14	2.4	15	90	4	54	42	37	0	20	1.52
55690484--55690568	21	4.0	20	72	11	53	45	31	1	21	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55690492--55690571	14	5.6	14	70	14	56	47	31	0	21	1.51
55690828--55691279	189	2.4	188	78	5	430	26	23	18	31	1.97
55691200--55691481	112	2.5	112	79	5	327	25	24	19	31	1.98
55693786--55693861	40	1.9	40	86	5	109	27	25	30	17	1.97
55693941--55694219	41	6.8	41	77	6	244	16	23	25	34	1.96
55693940--55694202	123	2.1	123	81	6	302	15	23	25	35	1.94
55694713--55694750	15	2.5	15	86	0	58	21	0	42	36	1.53
55694686--55694753	15	4.9	14	74	13	52	23	0	35	41	1.55
55695708--55695732	13	1.9	13	100	0	50	24	0	52	24	1.48
55695686--55695770	28	2.9	29	78	16	86	24	1	44	29	1.61
55695695--55695763	15	4.7	14	76	20	54	26	1	43	28	1.63
55695664--55695786	14	8.5	15	69	12	78	23	0	42	33	1.60
55698625--55698703	22	3.8	22	71	21	64	46	12	2	37	1.55
55698628--55698716	18	4.8	18	71	14	74	47	12	2	38	1.54
55698743--55698966	121	1.9	121	91	1	369	39	8	7	44	1.62
55698938--55698993	27	2.1	27	100	0	112	41	7	3	48	1.48
55698817--55699612	148	5.2	148	85	11	1118	40	8	6	44	1.59
55698757--55699003	121	2.0	120	80	10	272	40	8	5	45	1.57
55699086--55699141	27	2.1	27	100	0	112	41	7	3	48	1.48
55699090--55699464	175	2.1	175	99	0	741	40	8	5	45	1.58
55699238--55699316	27	2.9	27	98	0	149	41	8	2	46	1.48
55699409--55699464	27	2.1	27	100	0	112	41	7	3	48	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55698942--55699691	323	2.3	323	98	0	1450	40	9	5	44	1.60
55699147--55699676	175	3.0	174	84	9	590	40	9	6	44	1.62
55699561--55699639	27	2.9	27	98	0	149	41	8	2	46	1.48
55699696--55699738	16	2.7	16	92	0	68	51	18	0	30	1.47
55699787--55700096	25	12.4	25	77	2	275	45	18	2	33	1.62
55699825--55700229	75	5.5	75	79	9	424	45	18	2	33	1.62
55699825--55700286	50	9.2	50	70	12	259	45	19	2	33	1.63
55699782--55700287	9	60.3	9	66	16	239	45	19	2	32	1.64
55699907--55700090	99	1.9	99	91	0	305	45	18	1	34	1.59
55700074--55700207	25	5.3	25	74	7	117	44	21	2	31	1.64
55699785--55700148	174	2.1	173	82	6	439	44	19	2	33	1.64
55699964--55700285	118	2.8	118	83	5	389	45	20	1	31	1.62
55699752--55700287	292	1.8	287	87	7	803	45	19	2	32	1.63
55705670--55705839	66	2.6	66	86	1	225	41	18	27	13	1.88
55705811--55705854	21	2.1	21	86	0	61	34	18	45	2	1.62
55705830--55705922	21	4.4	21	81	0	105	35	16	43	5	1.71
55706036--55706266	43	5.4	42	75	9	171	25	23	26	25	2.00
55708807--55709182	123	3.0	124	92	1	628	29	16	22	31	1.96
55712305--55712372	17	3.8	17	71	16	57	48	1	5	44	1.36
55712190--55712434	115	2.1	115	92	3	402	45	6	8	39	1.62
55712428--55713449	23	45.1	22	75	15	823	27	0	24	48	1.54
55712504--55713405	67	13.4	65	80	11	616	26	0	25	47	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55712491--55713405	45	20.4	43	76	16	496	26	0	25	47	1.54
55713394--55713461	23	3.0	23	70	21	63	29	0	22	48	1.51
55713495--55713542	25	1.9	25	100	0	96	39	14	0	45	1.45
55714660--55714684	7	3.6	7	100	0	50	60	12	0	28	1.32
55714832--55714869	20	1.9	20	84	10	51	55	7	2	34	1.43
55715764--55715805	11	3.7	11	84	6	57	54	0	0	45	0.99
55715803--55715845	22	2.0	22	86	4	61	48	2	25	23	1.62
55720298--55720416	23	5.2	23	81	0	148	30	25	20	24	1.99
55720305--55720416	46	2.4	46	87	0	170	30	25	20	24	1.99
55720298--55720433	69	2.0	68	79	5	148	33	25	18	23	1.97
55722292--55722329	11	3.5	11	92	0	67	42	2	7	47	1.46
55725760--55725807	18	2.7	18	93	0	78	35	10	12	41	1.77
55726232--55726403	72	2.4	72	87	4	260	27	5	13	53	1.61
55741167--55741226	30	2.0	31	86	3	86	40	0	40	20	1.52
55741440--55741485	9	5.1	9	89	0	74	28	10	15	45	1.79
55741440--55741485	18	2.6	18	100	0	92	28	10	15	45	1.79
55741538--55741568	9	3.4	9	90	0	53	38	22	12	25	1.90
55744945--55744994	15	3.5	15	75	25	54	66	0	14	20	1.26
55747215--55747256	23	1.9	22	85	9	59	54	4	9	30	1.53
55747255--55747298	19	2.5	17	81	7	52	68	6	4	20	1.31
55748723--55749226	128	3.9	128	93	0	837	24	24	19	31	1.98
55751548--55751607	6	9.7	6	80	7	57	10	6	13	70	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55751540--55751595	26	2.1	27	87	9	80	8	8	10	71	1.31
55751533--55751601	26	2.7	26	78	13	79	10	10	10	69	1.37
55756127--55756168	23	1.9	22	85	9	59	54	4	9	30	1.53
55756168--55756211	19	2.5	17	81	7	52	68	6	4	20	1.31
55756882--55756923	21	1.9	22	85	9	59	64	14	16	4	1.45
55757615--55758105	122	3.9	127	88	4	732	23	24	19	31	1.98
55760423--55760481	6	9.7	6	83	3	64	10	6	13	69	1.35
55760422--55760469	25	1.9	25	87	8	71	8	8	12	70	1.32
55760422--55760475	25	2.2	25	83	6	65	9	7	12	70	1.33
55760423--55760494	37	1.9	37	85	0	99	8	13	11	66	1.44
55765060--55765101	23	1.9	22	85	9	59	54	4	9	30	1.53
55767338--55767442	55	1.9	55	100	0	210	39	18	18	24	1.92
55770008--55770037	13	2.3	13	100	0	60	33	6	0	60	1.23
55773751--55773808	30	1.9	30	89	0	89	41	3	24	31	1.71
55774021--55774051	13	2.4	13	94	0	53	32	0	12	54	1.38
55774146--55774394	50	4.8	50	85	3	309	26	22	28	22	1.99
55782899--55782981	21	4.0	21	82	3	89	40	16	22	19	1.91
55791232--55791321	36	2.4	38	81	3	112	14	14	41	30	1.85
55794179--55794233	16	3.4	16	75	12	58	16	23	1	58	1.48
55794293--55794323	13	2.4	13	94	0	53	38	3	0	58	1.15
55795724--55795819	48	2.0	48	87	0	138	41	20	16	20	1.90
55803335--55803382	3	15.7	3	86	4	69	29	2	4	64	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55806636--55806682	12	4.5	11	75	20	55	82	8	0	8	0.83
55806638--55806674	19	1.9	19	94	0	65	89	5	0	5	0.60
55808944--55810018	95	11.3	95	92	0	1630	30	21	22	25	1.98
55809983--55810224	50	4.9	48	70	14	136	33	22	19	24	1.97
55809461--55810317	95	8.8	100	89	5	487	32	21	21	25	1.98
55810342--55810648	44	7.1	42	73	11	223	30	19	21	28	1.98
55810356--55810656	128	2.3	128	87	0	440	29	20	21	27	1.98
55812571--55812624	3	17.7	3	88	3	81	29	1	3	64	1.21
55817915--55817966	24	2.2	24	92	0	86	48	0	3	48	1.20
55818132--55818195	13	4.9	13	90	0	101	25	7	26	40	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240