genome.fa.s24.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  109  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33795930--33795955	12	2.2	12	100	0	52	42	7	7	42	1.62
33802061--33802093	17	1.9	17	93	0	57	60	3	0	36	1.12
33812149--33812208	22	2.7	23	73	19	63	66	6	0	26	1.16
33812158--33812191	4	8.0	4	90	9	50	73	2	0	23	0.97
33818659--33818718	22	2.7	23	73	19	63	66	6	0	26	1.16
33818668--33818701	4	8.0	4	90	9	50	73	2	0	23	0.97
33826393--33826424	12	2.8	12	95	4	57	43	18	9	28	1.81
33833732--33833812	26	3.1	26	100	0	162	34	25	22	17	1.95
33833976--33834198	27	8.3	27	85	5	290	19	19	20	40	1.92
33836356--33836394	16	2.3	18	86	8	55	58	5	2	33	1.33
33842124--33842160	19	1.9	19	88	0	56	37	8	10	43	1.69
33842147--33842183	19	1.9	20	94	5	67	35	5	10	48	1.61
33847179--33847267	25	3.6	25	78	6	108	33	21	17	26	1.96
33852005--33852029	13	1.9	13	100	0	50	20	0	0	80	0.72
33852252--33852300	20	2.3	21	82	6	55	16	10	0	73	1.09
33858390--33858419	12	2.5	12	94	0	51	20	26	26	26	1.99
33860228--33860266	18	2.2	18	95	0	69	41	28	0	30	1.57
33863787--33863862	27	2.8	26	86	7	89	42	22	9	26	1.83
33863787--33863862	18	4.2	18	85	6	100	42	22	9	26	1.83
33866635--33866913	56	5.0	55	78	11	244	43	15	10	30	1.81
33866663--33866913	57	4.5	57	81	6	280	43	15	9	31	1.78
33866648--33866913	113	2.4	113	84	3	342	43	15	10	30	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33877550--33877667	43	2.7	44	75	12	118	34	27	16	22	1.95
33879032--33879251	27	8.1	27	83	5	248	42	18	14	24	1.88
33879032--33879251	81	2.7	81	87	2	300	42	18	14	24	1.88
33884403--33884428	5	5.2	5	100	0	52	42	19	19	19	1.90
33885181--33885240	30	2.0	31	86	3	86	40	0	40	20	1.52
33885517--33885547	9	3.4	9	90	0	53	38	22	12	25	1.90
33893984--33894018	14	2.5	14	100	0	70	20	5	0	74	1.02
33896351--33896390	18	2.2	18	86	8	55	35	10	7	47	1.65
33896565--33896648	44	1.9	44	90	0	132	46	7	8	38	1.62
33896616--33896649	18	1.9	18	88	5	52	55	5	2	35	1.39
33907256--33907341	25	3.5	23	80	10	100	59	1	1	38	1.13
33907239--33907344	48	2.1	52	86	11	159	60	1	0	36	1.14
33909829--33909881	26	2.1	24	82	10	61	22	1	9	66	1.31
33913493--33913535	21	2.0	21	91	8	70	37	4	18	39	1.72
33914941--33914980	20	1.9	22	85	10	57	37	7	7	47	1.60
33915575--33915645	36	2.0	36	94	0	124	46	14	12	26	1.80
33915592--33915645	17	2.9	19	71	20	60	46	16	12	24	1.82
33915574--33915637	17	3.6	17	72	15	58	46	12	12	28	1.78
33924792--33924833	22	1.9	22	90	0	66	42	11	21	23	1.86
33934597--33934664	15	4.4	15	74	18	59	45	0	1	52	1.09
33934688--33934718	16	2.0	16	93	6	55	38	0	0	61	0.96
33934745--33934786	22	1.9	22	85	0	57	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33934765--33934799	16	2.2	16	94	0	61	42	0	2	54	1.15
33934842--33934867	9	2.9	9	100	0	52	42	0	0	57	0.98
33943606--33943660	21	2.5	20	77	13	56	63	9	0	27	1.24
33943724--33943864	10	14.6	9	79	15	140	63	3	0	32	1.17
33943708--33943864	50	3.2	47	78	15	174	63	3	0	32	1.17
33944392--33944417	10	2.6	10	100	0	52	26	0	7	65	1.20
33944384--33944543	20	8.2	19	69	18	80	38	0	3	58	1.19
33944384--33944499	30	3.9	29	75	15	87	37	0	3	59	1.14
33944384--33944471	30	3.0	30	80	9	92	36	0	4	59	1.18
33944453--33944552	28	3.5	28	70	20	82	41	1	1	57	1.12
33954748--33954778	10	3.1	10	100	0	62	19	19	19	41	1.90
33959990--33960025	14	2.8	14	84	16	51	63	2	0	33	1.08
33961951--33962046	31	3.1	31	95	3	174	31	9	13	45	1.75
33962602--33962680	8	8.7	9	75	21	67	72	12	15	0	1.13
33962603--33962682	27	3.0	27	94	0	142	72	12	15	0	1.12
33965717--33965812	31	3.1	31	95	3	174	31	9	13	45	1.75
33981878--33981974	48	2.0	49	90	6	153	42	19	22	15	1.89
33987204--33987234	11	2.7	11	95	5	53	9	12	12	64	1.50
33991400--33991429	15	2.0	15	93	0	51	23	20	26	30	1.98
33995576--33995745	86	2.0	86	94	0	295	29	24	21	24	1.99
34001602--34001627	12	2.2	12	100	0	52	34	15	23	26	1.94
34003870--34003901	16	2.0	16	93	0	55	40	6	9	43	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34004221--34004301	26	3.2	26	68	28	82	22	13	29	34	1.92
34004107--34004301	51	3.9	51	78	9	204	24	16	27	31	1.96
34004525--34004556	16	2.0	16	93	0	55	59	0	15	25	1.36
34006138--34006179	21	2.0	21	86	9	59	28	2	14	54	1.52
34014413--34014445	17	2.0	17	88	5	50	21	30	45	3	1.67
34021314--34021391	29	2.7	28	80	11	95	25	14	30	29	1.94
34021344--34021670	173	1.9	174	97	0	620	30	14	24	31	1.94
34029453--34029530	29	2.7	28	80	11	95	25	14	30	29	1.94
34029483--34029810	174	1.9	174	98	0	638	30	14	24	31	1.94
34035055--34035200	50	2.9	49	79	7	141	24	26	21	26	2.00
34041960--34041997	19	2.0	19	85	10	51	21	42	0	36	1.53
34051033--34051089	17	2.8	22	67	25	61	29	5	19	45	1.72
34051033--34051110	39	2.0	39	82	5	95	32	6	15	46	1.71
34058510--34058646	71	1.9	71	88	2	204	29	16	23	29	1.96
34059799--34059933	51	2.7	50	84	4	173	22	20	26	31	1.98
34060159--34060190	16	2.0	16	93	0	55	59	0	15	25	1.36
34062260--34062305	20	2.3	20	100	0	92	34	10	4	50	1.57
34064775--34064838	30	2.1	30	94	0	110	35	17	25	21	1.95
34072995--34073028	11	2.8	13	91	8	54	44	11	8	35	1.72
34074084--34074267	76	2.4	76	90	2	291	22	18	25	33	1.97
34074127--34074265	43	3.5	41	71	18	132	23	17	25	34	1.96
34074168--34074370	103	2.0	103	93	1	345	20	19	27	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34074246--34074406	33	4.7	33	71	21	102	22	21	26	30	1.99
34077513--34077622	50	2.2	50	88	0	157	22	10	30	35	1.89
34078745--34078791	24	2.0	23	91	4	76	61	8	0	29	1.25
34079686--34079718	17	2.0	17	88	5	50	36	0	0	63	0.95
34079693--34079741	18	2.8	18	84	3	55	40	0	2	57	1.10
34090683--34090712	15	2.1	15	93	6	53	30	6	40	23	1.80
34102826--34102884	30	2.0	29	83	9	75	47	6	3	42	1.46
34104289--34104357	30	2.3	30	82	9	88	55	5	0	39	1.24
34104339--34104388	8	6.1	8	76	19	50	62	0	4	34	1.14
34104339--34104387	17	2.9	17	75	21	50	61	0	4	34	1.15
34104340--34104388	24	2.0	24	84	0	62	61	0	4	34	1.15
34108802--34111037	697	3.2	695	89	2	3362	29	15	12	42	1.84
34111147--34111198	17	3.1	17	81	10	63	50	3	11	34	1.57
34122603--34122630	12	2.3	12	100	0	56	50	0	0	50	1.00
34121259--34122732	687	2.1	679	84	5	1578	29	15	12	42	1.84
34123920--34123955	15	2.3	15	85	4	54	47	0	2	50	1.15
34143308--34143347	16	2.5	16	91	0	62	50	32	5	12	1.62
34144721--34144772	25	2.1	25	85	3	70	23	19	25	32	1.97
34144822--34144862	21	2.0	21	95	0	73	31	21	12	34	1.91
34146718--34146755	19	2.0	20	89	5	60	44	15	2	36	1.61
34152885--34152942	21	2.7	22	84	10	77	31	22	12	34	1.91
34152979--34153029	26	1.9	27	88	4	77	25	11	23	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34154800--34154837	19	2.0	20	89	5	60	44	15	2	36	1.61
34155819--34155920	29	3.6	29	83	1	125	27	16	29	26	1.97
34155819--34155929	57	1.9	58	85	1	152	28	16	28	26	1.97
34164157--34164204	24	2.0	24	84	8	62	43	20	2	33	1.64
34181944--34182029	30	2.9	29	78	11	86	29	18	23	29	1.98
34186139--34186188	21	2.4	22	80	10	59	8	14	34	44	1.74
34189617--34189788	47	3.7	47	88	3	222	33	9	30	26	1.88
34189911--34190063	37	4.1	37	93	0	252	22	18	32	26	1.97
34192860--34193125	47	5.7	48	77	12	227	27	18	30	23	1.98
34195842--34195909	29	2.3	29	85	5	93	27	30	13	27	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240