Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  112  of  240  ( 28759 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34891500--34891537
20
2.0
20
94
5
60
52
0
2
44
1.14
34891505--34891548
20
2.2
20
84
8
54
54
4
4
36
1.41
34893859--34893921
31
2.0
31
100
0
126
49
12
19
19
1.79
34895049--34895085
19
1.9
19
89
10
58
48
0
2
48
1.15
34896428--34896470
23
1.9
23
85
4
61
58
2
13
25
1.48
34899106--34899132
4
6.8
4
100
0
54
77
0
0
22
0.76
34905957--34906103
50
2.9
50
65
4
125
22
19
22
35
1.96
34908546--34908601
25
2.2
25
84
12
71
42
7
0
50
1.30
34920980--34921015
6
6.0
6
96
0
63
19
47
16
16
1.83
34926250--34926337
27
3.1
28
88
8
133
34
23
0
42
1.55
34926234--34926341
30
3.7
29
87
8
148
35
21
0
42
1.59
34926319--34926358
20
2.0
20
85
0
53
32
27
2
37
1.70
34926828--34926894
10
6.7
10
77
17
68
76
0
22
1
0.87
34926826--34926879
18
3.1
18
86
7
76
75
0
24
0
0.80
34926826--34926903
15
5.4
14
76
11
50
75
0
20
3
0.95
34927044--34927077
10
3.3
10
87
4
50
85
0
14
0
0.60
34927090--34927185
28
3.4
28
82
0
93
30
39
25
5
1.77
34927624--34927656
15
2.1
17
88
11
52
57
0
6
36
1.23
34931154--34931186
4
8.2
4
93
0
57
24
24
3
48
1.65
34933638--34933687
25
2.0
25
100
0
100
36
16
24
24
1.94
34937906--34938458
75
7.3
75
83
2
658
27
17
19
35
1.94
34938718--34938750
16
2.1
16
94
5
59
66
0
0
33
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34938781--34938823
20
2.2
20
91
4
70
41
20
4
32
1.73
34939379--34939451
7
10.4
7
74
11
51
79
0
16
4
0.88
34939378--34939435
10
5.4
11
77
6
57
75
0
22
1
0.89
34939398--34939452
17
3.2
17
77
10
58
83
0
10
5
0.79
34939631--34939698
28
2.4
28
80
0
82
33
38
23
4
1.75
34940434--34940647
113
1.9
111
86
5
306
28
17
17
37
1.92
34950522--34950577
28
2.0
28
96
0
103
8
42
26
21
1.82
34954934--34954966
17
1.9
17
100
0
66
27
30
18
24
1.98
34958746--34958794
25
2.0
24
84
7
64
32
8
8
51
1.61
34960052--34960088
17
2.2
18
90
9
60
70
0
21
8
1.13
34962657--34962704
24
2.0
24
100
0
96
29
20
25
25
1.99
34969338--34969397
23
2.5
24
79
15
79
25
11
11
51
1.72
34970785--34971091
40
7.7
40
84
0
308
35
15
26
22
1.94
34972493--34972535
20
2.1
21
91
4
70
20
9
2
67
1.30
34990668--34991081
206
2.0
206
89
0
641
36
18
10
33
1.86
34993478--34993521
18
2.4
18
85
7
54
77
6
6
9
1.13
35003077--35003110
17
2.0
17
100
0
68
17
35
5
41
1.74
35014149--35014347
43
4.7
41
78
10
204
22
15
26
35
1.94
35014149--35014385
85
2.8
84
89
0
330
23
16
25
35
1.95
35015722--35015764
22
2.0
22
90
4
70
55
9
0
34
1.32
35016462--35016515
26
2.1
26
96
0
99
31
27
7
33
1.84
35022996--35023030
14
2.5
14
90
0
52
51
14
5
28
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35023481--35023522
21
2.0
21
86
9
59
11
19
40
28
1.87
35030932--35030959
12
2.3
12
100
0
56
46
10
7
35
1.66
35031526--35031587
26
2.3
26
88
2
88
32
22
9
35
1.87
35032600--35032650
25
2.0
25
100
0
102
43
15
19
21
1.88
35036321--35036664
187
1.8
187
92
0
580
38
11
20
28
1.88
35038603--35038668
22
3.3
21
74
24
70
15
16
30
37
1.90
35038576--35038668
38
2.4
38
87
0
132
17
15
29
38
1.90
35042217--35042269
16
3.3
16
97
0
97
39
5
33
20
1.76
35042249--35042339
44
2.0
46
91
4
150
26
4
29
39
1.75
35042249--35042355
46
2.5
44
82
11
134
28
3
29
37
1.75
35042497--35042652
17
10.5
15
65
30
61
54
2
1
41
1.22
35042502--35042535
17
2.0
17
100
0
68
58
0
0
41
0.98
35042619--35042652
17
2.0
17
100
0
68
58
0
0
41
0.98
35042593--35042782
43
4.7
43
67
22
151
53
2
2
42
1.27
35042482--35042971
117
4.3
117
92
3
786
51
3
1
42
1.30
35042731--35042769
17
2.5
15
84
15
60
61
0
0
38
0.96
35042736--35042769
17
2.0
17
100
0
68
58
0
0
41
0.98
35042802--35042841
20
2.0
21
85
5
55
60
5
0
35
1.19
35042931--35042994
32
2.0
32
81
0
74
48
3
0
48
1.17
35045185--35045252
28
2.4
27
80
9
73
58
7
1
32
1.34
35049189--35049238
22
2.3
22
79
3
57
28
6
8
58
1.51
35050708--35050761
26
2.1
26
96
0
99
51
24
11
12
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35051712--35051846
48
2.8
47
84
3
171
33
15
19
31
1.93
35056135--35056395
138
1.9
138
85
6
359
30
27
21
20
1.98
35063306--35063357
19
2.7
20
87
3
70
76
3
0
19
0.93
35063306--35063357
6
8.2
6
76
19
52
76
3
0
19
0.93
35067195--35067224
11
2.7
11
89
0
51
50
0
0
50
1.00
35067193--35067242
22
2.3
21
80
16
57
54
2
0
44
1.11
35067238--35067278
21
2.0
21
95
0
73
68
0
4
26
1.10
35067198--35067395
14
14.4
14
70
17
69
51
3
2
43
1.28
35067281--35067327
19
2.3
20
80
20
53
53
2
4
40
1.32
35067340--35067399
7
8.6
7
100
0
120
43
0
0
56
0.99
35070285--35070322
20
1.9
20
88
0
58
21
13
39
26
1.89
35070309--35070377
29
2.4
28
83
13
79
14
20
39
26
1.91
35070696--35070750
26
2.1
26
86
0
74
18
18
23
40
1.91
35070847--35070918
33
2.2
33
87
5
101
26
25
20
27
1.99
35072153--35072208
21
2.7
21
94
0
94
35
30
14
19
1.91
35073927--35074002
3
25.3
3
94
5
136
1
32
0
65
1.01
35079212--35079248
17
2.1
17
90
5
56
70
0
0
29
0.88
35079209--35079290
29
2.7
30
79
5
85
56
4
2
36
1.34
35081553--35081602
3
16.7
3
87
8
75
34
0
2
64
1.05
35082058--35082105
22
2.2
22
82
14
55
72
10
16
0
1.10
35082464--35082507
23
1.9
24
90
9
74
54
2
20
22
1.56
35083038--35083096
27
2.2
28
81
9
77
27
0
27
45
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35084230--35084276
24
2.0
24
83
8
60
42
2
8
46
1.46
35085679--35085766
46
1.9
45
82
13
108
38
7
3
50
1.49
35086942--35086984
18
2.3
19
84
8
61
25
4
9
60
1.47
35090475--35090501
6
4.5
6
100
0
54
0
14
0
85
0.61
35093458--35093484
13
2.1
13
100
0
54
37
7
22
33
1.82
35097279--35097463
50
3.8
50
81
2
196
22
27
22
28
1.99
35103487--35103558
25
2.9
25
89
0
108
25
19
26
29
1.99
35110074--35110110
9
4.1
9
85
0
56
45
10
10
32
1.74
35110159--35110219
30
2.0
31
87
3
88
21
44
0
34
1.53
35110324--35110383
30
2.0
31
86
3
86
21
38
0
40
1.54
35111721--35111776
28
2.0
28
100
0
112
35
17
10
35
1.85
35112017--35112058
22
1.9
22
85
0
57
50
4
4
40
1.45
35113309--35113334
5
5.2
5
100
0
52
0
0
19
80
0.71
35118779--35118821
14
3.1
14
86
0
59
41
37
2
18
1.63
35119671--35119805
40
3.4
38
74
7
108
20
20
21
37
1.94
35119691--35119805
40
2.9
41
80
3
137
23
21
20
34
1.96
35121479--35121515
18
2.0
19
94
5
67
27
10
0
62
1.28
35133608--35133966
44
8.0
44
77
8
303
32
17
22
28
1.96
35133539--35133847
139
2.2
140
88
2
462
31
17
22
28
1.96
35133645--35133825
95
1.9
95
82
6
224
33
17
23
25
1.96
35138121--35138167
23
2.0
23
92
8
78
40
0
2
57
1.11
35138353--35138394
16
2.6
16
92
0
66
42
7
2
47
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35138368--35138423
23
2.5
23
85
2
78
42
1
3
51
1.29
35138511--35138549
19
2.1
19
100
0
78
38
20
5
35
1.75
35150768--35150851
21
4.0
21
80
0
69
26
25
32
16
1.96
35153994--35154055
20
3.1
20
76
0
70
37
20
24
17
1.94
35156372--35156451
30
2.7
30
82
1
99
46
6
25
22
1.75
35160614--35160644
9
3.4
9
95
0
53
35
0
3
61
1.12
35163590--35163626
16
2.2
18
85
9
51
29
16
0
54
1.43
35164792--35164832
13
3.1
14
79
10
50
46
14
19
19
1.84
35167317--35167368
24
2.2
24
85
0
68
55
7
1
34
1.39
35169293--35169344
24
2.2
24
92
0
86
55
7
1
34
1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240