genome.fa.s24.2.7.7.80.10.50.1000.214.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  214  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64594078--64594113	18	1.9	18	88	5	54	36	0	0	63	0.94
64596861--64596900	20	2.0	20	100	0	80	35	10	5	50	1.58
64607339--64607399	32	1.9	32	100	0	122	52	16	9	21	1.72
64615803--64615853	27	2.0	26	82	14	63	43	7	3	45	1.51
64616983--64617016	7	4.9	7	96	0	59	44	32	0	23	1.54
64619549--64619579	5	6.2	5	100	0	62	38	19	0	41	1.51
64622960--64623145	73	2.5	73	97	0	354	40	24	6	28	1.79
64627377--64627562	73	2.5	73	97	0	354	40	24	6	28	1.79
64630992--64631036	22	2.0	23	82	4	56	26	6	13	53	1.64
64632384--64632423	21	1.9	21	84	0	53	30	7	20	42	1.79
64637266--64637306	17	2.4	17	87	4	55	60	2	0	36	1.10
64637377--64637449	38	1.9	38	82	0	92	54	2	10	31	1.49
64638170--64638204	18	1.9	18	94	0	61	65	2	0	31	1.07
64638170--64638205	19	1.9	18	88	5	54	66	2	0	30	1.06
64638356--64638408	17	3.2	16	75	20	56	47	24	1	26	1.62
64638345--64638408	32	2.0	32	96	0	119	48	25	3	23	1.65
64638345--64638396	15	3.3	15	75	19	61	50	26	3	19	1.65
64647050--64647098	20	2.5	20	86	0	62	65	4	4	26	1.29
64655280--64655350	35	2.0	35	91	0	115	23	36	18	21	1.95
64655313--64655405	42	2.2	41	82	3	105	34	29	15	21	1.94
64660786--64661062	41	6.9	41	91	2	431	28	29	20	21	1.98
64660781--64661062	122	2.3	119	88	5	415	29	28	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64660786--64661062	81	3.5	81	92	3	420	28	29	20	21	1.98
64661033--64661165	38	3.4	39	74	9	119	24	19	18	37	1.94
64661049--64661163	38	3.0	39	78	5	128	26	18	18	37	1.93
64664150--64664202	16	3.3	16	74	10	54	37	24	5	32	1.79
64664392--64664526	41	3.4	41	83	6	147	32	24	17	25	1.97
64664687--64664720	11	3.1	11	91	8	52	52	2	0	44	1.16
64665414--64665444	15	2.0	16	93	6	55	0	22	0	77	0.77
64665417--64665454	19	2.0	19	85	10	51	0	23	2	73	0.95
64667666--64667709	18	2.4	18	81	7	54	43	15	0	40	1.47
64668003--64668059	21	2.8	21	82	10	57	5	17	1	75	1.07
64668013--64668052	15	2.6	16	84	8	55	5	17	0	77	0.94
64668029--64668059	9	3.3	9	91	8	53	9	12	0	77	0.99
64668557--64668954	209	1.9	206	85	3	548	24	16	14	44	1.84
64680711--64680751	21	2.0	21	90	0	64	29	21	29	19	1.98
64682654--64682687	16	2.1	16	88	0	50	50	14	17	17	1.79
64687064--64687102	21	2.0	20	90	10	62	41	30	2	25	1.69
64689138--64689167	8	3.8	8	95	0	51	60	3	0	36	1.14
64698998--64699031	18	1.9	18	88	5	52	41	2	0	55	1.15
64699165--64699217	20	2.6	20	78	3	61	37	0	0	62	0.96
64702621--64702661	21	2.0	21	90	0	64	19	29	21	29	1.98
64706549--64706599	4	12.8	4	87	8	77	25	1	0	72	0.95
64707758--64707806	2	24.5	2	95	0	89	0	46	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64710814--64710842	9	3.2	9	100	0	58	41	0	0	58	0.98
64726819--64727011	47	4.0	48	81	8	196	23	17	28	30	1.97
64729720--64729776	13	4.4	13	79	14	64	36	14	1	47	1.54
64729722--64729837	40	2.9	40	79	6	121	33	15	4	46	1.65
64729805--64729856	27	1.9	27	81	14	63	34	19	1	44	1.62
64729785--64729874	40	2.3	40	82	1	101	34	18	4	42	1.71
64737711--64739320	213	7.6	213	91	2	2488	33	20	17	28	1.95
64744367--64744394	9	3.1	9	100	0	56	57	10	0	32	1.33
64744337--64744478	68	2.1	66	93	2	239	45	8	4	40	1.56
64744467--64744508	16	2.6	16	92	0	66	42	7	2	47	1.43
64744482--64744537	23	2.5	23	82	2	69	44	1	1	51	1.22
64744994--64745020	3	9.0	3	100	0	54	33	33	33	0	1.58
64749477--64749517	21	2.0	21	90	0	64	29	21	29	19	1.98
64758842--64758875	17	1.9	18	94	5	61	50	2	0	47	1.16
64760617--64760650	15	2.3	15	89	0	50	55	11	17	14	1.68
64760744--64760799	18	3.1	19	76	20	57	69	5	5	19	1.28
64762744--64763529	134	5.9	134	96	0	1398	29	23	19	26	1.98
64763450--64764945	44	34.2	43	75	8	1193	30	25	15	28	1.96
64763510--64764917	132	10.7	131	88	3	1766	30	25	15	29	1.95
64765867--64765916	7	7.4	7	80	14	61	4	14	0	82	0.82
64765866--64765916	6	7.8	6	81	16	50	3	15	0	80	0.86
64765867--64765916	12	3.8	13	82	15	66	4	14	0	82	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64766354--64766403	18	2.8	17	79	8	55	6	4	8	82	0.96
64767705--64767766	17	3.2	20	71	21	60	43	8	22	25	1.80
64768215--64769319	552	2.0	552	99	0	2165	37	19	20	23	1.94
64770225--64770258	15	2.3	15	89	0	50	55	11	17	14	1.68
64770352--64770407	18	3.1	19	76	20	57	69	5	5	19	1.28
64776666--64776724	32	1.9	32	89	6	95	37	0	1	61	1.07
64776693--64776732	18	2.2	19	86	4	55	35	0	0	65	0.93
64778225--64778279	16	3.1	18	87	10	69	60	1	0	38	1.08
64788899--64788926	3	9.3	3	100	0	56	64	0	35	0	0.94
64790435--64790459	13	1.9	13	100	0	50	64	0	0	36	0.94
64794277--64794323	24	2.0	24	86	0	67	40	2	6	51	1.39
64795394--64795427	17	2.0	17	94	0	59	23	11	8	55	1.63
64796249--64796298	13	3.8	13	79	10	66	34	2	24	40	1.66
64796779--64796803	13	1.9	13	100	0	50	36	16	16	32	1.90
64802303--64802334	14	2.4	14	94	5	57	0	6	3	90	0.53
64802304--64802351	22	2.1	23	85	11	64	2	6	8	83	0.88
64803367--64803425	12	5.0	12	76	19	54	71	0	5	23	1.06
64808028--64808077	27	1.9	25	84	8	64	16	8	22	54	1.68
64811894--64812032	71	2.0	71	91	0	224	36	26	5	30	1.80
64812908--64812966	25	2.3	27	82	11	70	44	15	1	38	1.56
64812933--64812973	13	3.0	14	73	20	50	36	14	2	46	1.58
64812998--64813078	13	6.2	13	75	2	81	35	20	1	41	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64816203--64816239	18	2.1	18	94	0	65	56	2	5	35	1.36
64816446--64816480	14	2.5	14	90	0	52	57	8	0	34	1.29
64816662--64816731	9	7.8	9	82	6	52	61	7	4	27	1.41
64816696--64816731	3	12.0	3	100	0	72	66	0	0	33	0.92
64818458--64818665	44	4.8	43	76	8	206	25	23	22	29	1.99
64818454--64818661	87	2.4	87	94	0	362	24	23	22	30	1.99
64831092--64831373	154	1.9	147	90	6	449	30	18	18	31	1.95
64832193--64832224	15	2.1	15	94	5	55	71	0	0	28	0.86
64832359--64832413	18	3.1	19	78	19	57	34	0	0	65	0.93
64832355--64832407	20	2.7	20	76	2	63	37	0	0	62	0.96
64837324--64838769	213	6.8	211	89	2	2021	33	21	17	27	1.95
64854670--64854729	19	3.1	19	79	13	68	56	1	3	38	1.26
64857465--64857492	6	4.7	6	100	0	56	0	64	0	35	0.94
64858819--64858863	22	2.0	22	82	0	54	53	4	2	40	1.33
64864043--64864492	230	2.0	230	100	0	900	32	22	15	29	1.95
64874447--64874535	18	4.8	18	69	17	56	10	23	1	65	1.30
64885300--64885480	25	7.3	25	84	5	215	31	1	18	48	1.58
64885300--64885482	41	4.4	41	77	12	155	31	1	19	47	1.59
64885307--64885482	9	21.0	9	76	12	153	31	1	19	47	1.60
64891189--64891529	9	40.4	9	79	11	350	30	2	20	47	1.62
64891189--64891529	25	13.5	27	82	8	271	30	2	20	47	1.62
64891183--64891523	34	10.2	34	80	10	334	30	2	20	47	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64893736--64893770	18	1.9	19	88	11	56	34	2	0	62	1.10
64893723--64893818	30	3.3	29	75	17	83	39	5	0	55	1.22
64893813--64893871	30	2.0	30	83	6	75	52	1	3	42	1.28
64904640--64904669	2	15.0	2	92	0	51	50	0	3	46	1.18
64910022--64910085	6	10.7	6	98	0	119	17	1	15	65	1.35
64912234--64912265	12	2.8	12	95	4	57	53	0	15	31	1.43
64912694--64912737	21	2.1	21	84	16	56	54	0	6	38	1.27
64913692--64913725	16	2.1	17	88	5	52	76	5	0	17	0.98
64916711--64916746	15	2.4	15	90	0	54	55	8	2	33	1.44
64917388--64917434	3	15.7	3	100	0	94	65	0	34	0	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240