genome.fa.s24.2.7.7.80.10.50.1000.224.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  224  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67436274--67436490	120	1.8	120	87	1	326	32	11	17	39	1.85
67439286--67439674	72	5.4	72	85	0	544	36	19	14	29	1.91
67439290--67439674	144	2.7	144	93	0	662	36	19	14	29	1.91
67440902--67440959	26	2.2	26	81	9	73	62	3	27	6	1.37
67443950--67443987	13	2.9	13	84	11	51	78	2	0	18	0.86
67447291--67447341	16	3.1	16	78	15	59	70	0	1	27	0.98
67447311--67447348	16	2.4	17	82	13	53	65	0	0	34	0.93
67449742--67449787	24	1.9	24	95	0	83	26	23	28	21	1.99
67449919--67449970	23	2.2	24	80	6	63	42	9	3	44	1.55
67457469--67457584	36	3.1	36	62	20	85	41	19	20	18	1.91
67457450--67457603	75	2.1	75	94	0	272	37	19	19	23	1.94
67460634--67460670	3	12.3	3	100	0	74	32	0	0	67	0.91
67464384--67464450	34	2.0	34	87	0	98	34	19	4	41	1.72
67464914--67464962	25	2.0	25	87	0	71	59	2	2	36	1.21
67465411--67465469	25	2.4	25	82	2	66	42	3	0	54	1.17
67465453--67465512	31	1.9	32	86	3	86	33	1	3	61	1.22
67468803--67469279	72	6.6	72	85	3	638	35	20	15	28	1.93
67468803--67469279	216	2.2	216	94	0	830	35	20	15	28	1.93
67475095--67475148	20	2.7	20	82	0	63	55	12	3	27	1.54
67475196--67475243	3	16.3	3	78	4	53	62	0	6	31	1.20
67475818--67475852	15	2.4	15	90	4	54	48	0	8	42	1.33
67475877--67475924	10	4.9	10	76	2	53	25	6	2	66	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67485095--67485137	18	2.2	20	84	8	54	37	0	0	62	0.95
67486129--67486196	27	2.4	28	85	7	93	42	7	1	48	1.40
67486582--67486647	19	3.5	19	79	4	89	37	10	1	50	1.47
67486659--67486807	82	1.8	80	94	2	262	44	10	4	40	1.59
67487237--67487285	24	2.0	24	88	0	71	38	6	22	32	1.79
67488040--67488088	25	2.0	25	87	0	71	59	2	2	36	1.21
67488452--67488482	16	1.9	16	93	0	53	35	6	22	35	1.80
67489106--67489142	15	2.4	16	90	4	58	72	2	0	24	0.97
67489145--67489239	30	3.2	30	84	3	129	28	23	3	45	1.68
67489804--67489842	21	1.9	20	94	5	69	74	15	10	0	1.07
67489804--67489847	21	2.2	19	88	8	61	75	13	9	2	1.14
67490155--67490184	16	1.9	16	93	6	53	36	3	0	60	1.14
67500795--67500832	16	2.4	16	91	8	60	73	2	0	23	0.95
67500828--67500928	30	3.4	29	82	5	114	29	21	3	44	1.70
67500828--67500944	30	4.0	28	78	9	92	29	21	3	45	1.68
67501188--67501228	17	2.5	17	84	11	50	68	0	31	0	0.90
67501179--67501232	22	2.5	22	84	0	63	64	0	35	0	0.94
67501288--67501338	20	2.6	21	78	12	63	70	0	29	0	0.87
67501587--67501634	7	6.7	7	95	4	87	85	0	14	0	0.60
67501586--67501643	15	3.9	15	90	6	91	84	0	15	0	0.62
67501586--67501643	22	2.6	22	91	2	98	84	0	15	0	0.62
67502176--67502248	36	2.0	37	86	2	103	31	12	12	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67502176--67502233	17	3.3	17	74	9	62	29	10	13	46	1.77
67502262--67502314	17	3.2	17	84	10	65	30	22	9	37	1.86
67502311--67502350	19	2.1	19	90	0	62	47	10	7	35	1.65
67502380--67502412	15	2.1	16	94	5	59	54	0	3	42	1.15
67510628--67511257	72	8.7	72	93	2	969	30	16	18	34	1.93
67510628--67511599	217	4.6	216	88	6	1450	30	16	18	34	1.93
67510850--67511599	411	1.8	411	95	1	1353	30	16	18	34	1.93
67511261--67511599	72	4.7	72	94	2	565	30	17	18	33	1.94
67511558--67511812	53	4.8	54	88	6	369	29	15	18	36	1.92
67512054--67512089	15	2.4	16	90	9	58	72	2	0	25	0.98
67512085--67512186	30	3.4	31	83	5	122	29	22	3	44	1.71
67512742--67512789	19	2.6	19	80	6	55	75	12	10	2	1.14
67513097--67513126	16	1.9	16	93	6	53	36	3	0	60	1.14
67513494--67513541	17	2.8	17	76	23	55	31	16	10	41	1.82
67513595--67513643	16	3.0	16	80	16	64	32	14	12	40	1.83
67513671--67513712	16	2.4	18	84	11	61	83	0	0	16	0.65
67513671--67513711	10	4.4	10	91	8	61	85	0	0	14	0.60
67513775--67514207	17	25.0	18	69	16	186	30	13	11	44	1.80
67513788--67513930	74	2.0	72	81	10	166	30	13	11	44	1.80
67514170--67514208	18	2.2	18	90	0	60	38	12	7	41	1.72
67514186--67514232	19	2.3	19	80	20	51	51	8	6	34	1.58
67514027--67514209	90	2.1	88	81	6	219	32	12	11	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67519435--67519524	44	2.0	44	100	0	180	35	13	8	42	1.75
67526666--67526721	28	2.0	28	92	0	94	28	3	10	57	1.49
67529088--67529170	36	2.4	34	82	9	89	40	10	16	31	1.83
67535226--67535266	21	2.0	21	90	0	64	29	21	29	19	1.98
67538569--67538628	10	6.2	10	70	14	54	66	0	5	28	1.12
67538858--67538906	21	2.3	21	86	10	64	28	2	6	63	1.30
67538871--67538930	31	1.9	31	90	6	95	33	1	3	61	1.22
67538910--67538948	20	2.0	20	84	0	51	23	2	2	71	1.10
67540137--67540246	53	2.1	53	100	0	220	34	14	11	39	1.83
67542110--67542193	39	2.1	40	95	2	152	23	15	28	32	1.95
67542122--67542183	17	3.4	17	70	20	52	25	20	27	25	1.99
67548587--67548624	16	2.4	16	90	0	58	31	0	34	34	1.58
67548858--67548892	18	2.0	17	88	5	52	54	0	0	45	0.99
67548745--67549061	157	2.0	157	95	0	571	44	3	4	47	1.38
67548995--67549036	15	2.7	16	82	14	52	52	2	0	45	1.13
67549004--67549045	15	2.9	15	82	10	52	52	0	0	47	1.00
67548993--67549290	120	2.5	121	93	3	503	49	4	3	42	1.39
67549114--67549165	15	3.6	15	80	12	56	53	1	0	44	1.11
67549331--67549391	28	2.2	28	85	5	81	50	3	0	45	1.17
67563023--67563068	21	2.2	21	85	11	60	63	0	2	34	1.07
67566788--67566853	9	7.3	9	79	5	71	33	1	1	63	1.13
67566776--67566856	8	9.4	8	73	15	63	39	2	1	56	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67566758--67566852	45	2.1	46	82	9	115	34	2	2	61	1.20
67574146--67574174	15	2.0	15	93	6	51	13	34	3	48	1.60
67578467--67578513	21	2.2	22	92	3	78	21	38	19	21	1.94
67584926--67584962	18	2.1	18	89	0	56	43	0	0	56	0.99
67584927--67584969	22	2.0	22	86	9	61	44	0	0	55	0.99
67588007--67588040	13	2.6	13	82	17	52	29	2	0	67	1.05
67588701--67588730	5	6.0	5	100	0	60	20	0	0	80	0.72
67592165--67592312	72	2.1	72	85	0	197	36	18	14	30	1.91
67594090--67594177	9	10.1	8	73	15	68	30	2	2	64	1.18
67594097--67594182	8	10.1	8	77	12	82	33	1	2	62	1.15
67594090--67594182	17	5.4	17	76	11	91	33	2	2	62	1.19
67597841--67597869	14	2.1	14	100	0	58	48	37	0	13	1.43
67597954--67598006	23	2.2	25	83	6	65	69	1	13	15	1.27
67603835--67603874	18	2.2	18	86	0	53	45	0	2	52	1.14
67611191--67611226	6	5.7	6	90	9	54	33	0	0	66	0.92
67611186--67611233	18	2.7	16	79	20	51	33	0	0	66	0.92
67616817--67616846	2	15.0	2	92	0	51	46	3	50	0	1.18
67617703--67618111	106	3.8	107	89	2	610	33	20	18	28	1.96
67618564--67618590	12	2.2	12	100	0	54	66	0	0	33	0.92
67624541--67624578	19	2.0	19	94	0	67	23	21	18	36	1.95
67628348--67628488	72	2.0	72	92	0	237	38	20	12	29	1.89
67630188--67630273	26	3.3	25	78	16	86	37	2	5	54	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67630203--67630264	8	7.4	8	75	10	61	40	1	3	54	1.26
67630203--67630273	17	4.2	17	72	12	65	40	1	4	53	1.29
67630203--67630275	18	4.2	18	75	13	64	41	1	4	53	1.28
67634755--67634792	20	2.0	20	89	5	60	50	15	7	26	1.72
67639201--67639238	20	2.0	20	89	5	60	50	15	7	26	1.72
67642982--67643017	18	2.0	18	88	0	54	47	8	0	44	1.33
67647452--67647479	14	2.0	14	100	0	56	28	0	0	71	0.86
67652256--67652308	23	2.4	21	79	14	63	32	5	1	60	1.31
67665166--67665206	21	2.0	21	85	0	55	31	21	26	19	1.97
67672852--67672891	21	1.9	21	85	10	55	45	2	0	52	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240