genome.fa.s24.2.7.7.80.10.50.1000.205.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  205  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62214472--62214512	18	2.2	19	86	8	57	75	4	7	12	1.16
62235804--62235887	34	2.5	34	84	9	109	44	0	13	42	1.43
62235958--62236227	126	2.1	128	88	6	399	37	15	15	30	1.89
62239210--62239240	9	3.6	9	91	8	55	64	0	0	35	0.94
62239261--62239317	25	2.3	24	80	11	71	54	3	0	42	1.17
62239207--62239325	54	2.2	54	83	4	141	52	5	0	42	1.29
62239265--62239447	93	2.0	92	96	1	339	55	3	3	36	1.36
62240371--62240396	7	3.7	7	100	0	52	57	15	0	26	1.38
62240553--62240596	18	2.4	18	81	7	54	45	4	2	47	1.35
62242737--62242789	24	2.2	24	96	0	97	35	0	7	56	1.28
62244623--62244652	14	2.1	14	100	0	60	53	0	0	46	1.00
62248375--62248526	43	3.6	44	75	12	149	27	15	25	31	1.96
62256211--62256506	9	34.9	9	64	21	106	32	2	19	45	1.64
62256224--62256308	25	3.4	25	83	6	118	34	0	18	47	1.49
62256339--62256363	13	1.9	13	100	0	50	36	0	16	48	1.46
62256322--62256365	22	2.0	21	91	4	70	36	0	15	47	1.46
62256322--62256657	52	6.6	51	67	21	154	34	1	17	47	1.56
62256414--62256456	16	2.7	16	88	0	59	30	0	23	46	1.52
62256433--62256513	25	3.2	25	76	1	90	29	3	20	45	1.69
62256513--62256742	32	7.3	32	73	15	180	36	0	14	48	1.44
62256582--62256678	12	8.5	12	78	13	89	40	0	10	49	1.37
62256513--62256757	128	1.9	128	92	1	411	36	0	14	48	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62256614--62256703	21	4.2	21	69	21	62	37	0	14	47	1.44
62256548--62256701	12	13.2	12	71	21	62	35	0	14	49	1.44
62256763--62256803	19	2.2	19	86	8	57	51	2	0	46	1.14
62256774--62256831	22	2.6	22	81	7	73	56	1	1	39	1.19
62259458--62259519	20	2.9	21	76	13	56	46	0	8	45	1.32
62260238--62260276	15	2.6	15	83	0	51	33	46	0	20	1.51
62260445--62260609	88	1.9	89	94	1	296	45	24	1	28	1.61
62260528--62260671	63	2.3	63	91	1	225	47	22	0	30	1.52
62260765--62260797	14	2.3	15	94	5	59	36	33	0	30	1.58
62261184--62261456	41	6.7	41	79	6	259	30	21	21	26	1.98
62261197--62261430	81	2.9	82	82	4	260	32	20	22	24	1.98
62261184--62261430	122	2.0	122	81	4	284	30	21	22	25	1.99
62265971--62266000	15	2.1	14	93	6	51	6	20	6	66	1.38
62266635--62266680	24	1.9	24	82	8	58	56	4	6	32	1.45
62275621--62275661	21	2.0	21	90	0	64	19	29	21	29	1.98
62282821--62282876	26	2.2	25	84	9	69	58	1	10	28	1.41
62282870--62282900	3	10.3	3	100	0	62	67	0	0	32	0.91
62283000--62283144	3	50.3	3	71	9	97	59	2	4	34	1.28
62283000--62283137	23	6.1	22	69	20	81	59	2	4	34	1.29
62283000--62283140	38	3.9	36	73	9	126	58	2	4	34	1.29
62284232--62284337	38	2.6	40	85	8	135	43	21	10	24	1.84
62284807--62284853	19	2.4	20	82	7	60	63	2	0	34	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62284817--62284900	30	2.9	29	76	3	87	57	0	2	40	1.12
62285268--62285316	24	2.0	24	84	7	64	36	0	4	59	1.17
62294764--62294816	21	2.6	21	79	11	56	60	5	3	30	1.37
62298064--62298409	123	2.8	124	91	1	550	28	17	21	32	1.96
62301591--62301805	50	4.6	46	83	8	188	45	13	0	40	1.50
62301619--62301795	25	7.3	25	82	6	222	44	13	0	41	1.48
62302217--62302256	18	2.2	18	95	0	71	40	7	30	22	1.81
62302907--62302932	7	3.7	7	100	0	52	57	15	0	26	1.38
62304148--62304196	11	4.4	11	81	2	62	51	0	32	16	1.45
62304837--62304878	18	2.3	18	91	0	66	42	38	4	14	1.66
62307705--62307743	20	2.0	20	84	0	51	15	0	28	56	1.40
62308426--62308469	21	2.1	21	100	0	88	40	4	18	36	1.71
62311316--62311348	5	6.8	5	86	6	50	15	3	0	81	0.80
62312105--62312150	3	15.3	3	95	0	83	32	2	0	65	1.05
62321263--62321301	18	2.2	18	85	0	51	12	23	2	61	1.43
62337880--62337904	11	2.3	11	100	0	50	56	0	0	44	0.99
62342203--62342363	42	3.9	41	85	3	196	24	19	21	34	1.97
62342749--62342795	21	2.2	21	88	0	67	2	38	21	38	1.65
62348276--62348321	7	6.0	7	90	9	56	30	0	17	52	1.45
62348283--62348935	9	72.8	9	76	6	596	32	2	17	47	1.60
62348999--62349049	21	2.4	21	93	0	84	39	9	15	35	1.81
62348904--62349144	116	2.1	116	96	1	448	38	5	12	42	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62349205--62349323	62	1.9	62	81	3	141	48	10	4	36	1.56
62349267--62349304	16	2.4	16	91	4	60	52	5	0	42	1.24
62349301--62349328	13	2.2	13	100	0	56	46	7	7	39	1.59
62349297--62349346	17	3.2	17	81	18	72	52	6	6	36	1.51
62350833--62350888	27	2.1	27	100	0	112	64	14	7	14	1.48
62353462--62353502	20	2.0	20	85	4	55	36	39	4	19	1.73
62353827--62354201	134	2.8	131	80	8	407	33	21	14	30	1.93
62353847--62354241	133	2.9	132	80	7	431	32	21	14	31	1.93
62354919--62354996	31	2.6	29	81	6	84	37	11	14	37	1.82
62363831--62363874	22	2.0	22	82	8	54	0	27	4	68	1.09
62366740--62366808	16	4.2	16	92	3	120	24	1	37	36	1.65
62366740--62366808	33	2.1	32	94	2	120	24	1	37	36	1.65
62366789--62366878	45	2.0	45	84	2	119	27	6	27	37	1.82
62366799--62366902	44	2.4	43	80	12	117	32	6	26	33	1.83
62367044--62367078	18	2.0	17	88	5	52	54	0	0	45	0.99
62367164--62367198	18	2.0	17	88	5	52	54	0	0	45	0.99
62367133--62367225	44	2.1	42	80	9	96	50	3	0	46	1.17
62367027--62367248	120	1.9	120	98	0	426	48	5	1	44	1.35
62370698--62370725	11	2.5	11	100	0	56	42	10	39	7	1.67
62371526--62371569	23	2.0	22	81	4	52	61	9	6	22	1.50
62380641--62380666	6	4.3	6	100	0	52	84	0	0	15	0.62
62383700--62383935	126	1.9	126	88	0	355	27	22	27	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62386096--62386128	17	1.9	17	93	0	57	21	21	36	21	1.95
62391612--62391648	9	4.1	9	90	10	58	56	0	0	43	0.99
62393512--62393625	59	1.9	59	100	0	228	36	11	21	30	1.88
62403176--62403242	24	2.8	24	77	6	82	41	2	0	55	1.15
62405045--62405094	25	2.0	25	96	0	91	22	32	14	32	1.93
62405045--62405206	25	6.5	25	73	12	82	21	25	17	35	1.95
62405062--62405207	74	2.0	75	82	4	179	21	25	18	34	1.96
62423244--62423710	156	3.0	156	97	0	868	31	20	16	30	1.95
62426176--62426243	22	3.0	21	75	16	66	10	7	2	79	1.03
62426183--62426243	21	2.7	22	76	16	63	11	4	3	80	0.99
62444628--62444673	24	1.9	24	86	0	65	45	0	41	13	1.43
62444675--62444712	12	3.2	12	92	0	58	34	7	34	23	1.84
62444675--62444709	6	5.8	6	96	0	52	34	8	34	22	1.85
62462226--62462267	20	2.1	20	86	8	59	59	9	0	30	1.29
62462236--62462295	19	3.3	18	75	9	59	63	6	0	30	1.20
62462210--62462304	45	2.1	45	81	11	106	63	6	1	29	1.26
62465753--62465847	48	2.0	48	100	0	190	38	10	21	29	1.86
62468098--62468177	29	2.6	30	82	5	81	46	16	7	30	1.74
62470415--62470453	19	2.1	19	100	0	78	58	41	0	0	0.98
62470989--62471022	7	4.9	7	96	0	50	58	20	0	20	1.39
62471235--62471278	23	1.9	23	86	9	63	36	13	9	40	1.76
62476760--62476798	4	9.8	4	86	8	53	20	0	2	76	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62476729--62476801	28	2.5	28	77	18	69	20	4	2	72	1.14
62476819--62476884	23	2.9	22	81	4	78	43	0	0	56	0.99
62476810--62476867	23	2.5	23	83	8	73	43	0	1	55	1.10
62476847--62476907	34	1.9	33	83	12	83	49	0	0	50	1.00
62476963--62477030	13	5.0	13	74	25	61	36	0	1	61	1.05
62476974--62477021	14	3.3	14	86	11	69	31	0	2	66	1.03
62477255--62477321	13	4.7	14	71	21	59	58	0	4	37	1.19
62477255--62477313	30	1.9	31	86	3	84	57	0	3	38	1.15
62477375--62477414	15	2.7	16	88	11	59	60	0	0	40	0.97
62477407--62477468	20	3.0	20	81	13	63	53	1	1	43	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240