genome.fa.s24.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  134  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41637316--41637371	28	1.9	30	82	7	71	42	25	1	30	1.65
41638498--41638576	37	2.1	37	92	0	131	27	30	17	24	1.97
41638695--41639251	47	11.7	47	94	1	884	29	29	8	32	1.87
41639126--41639204	25	3.3	25	64	10	74	34	27	5	32	1.79
41638696--41639251	241	2.3	238	90	3	723	29	29	8	32	1.87
41642109--41642163	22	2.5	22	84	0	74	32	7	16	43	1.75
41646602--41646866	40	6.7	40	85	6	252	26	28	21	24	1.99
41646604--41646866	120	2.2	119	80	6	282	25	28	21	24	1.99
41646798--41646875	40	1.9	41	82	10	97	28	28	20	23	1.99
41653977--41654148	40	4.3	40	87	2	204	25	28	22	23	1.99
41653977--41654201	80	2.8	79	78	5	193	25	28	21	24	1.99
41654133--41654210	40	1.9	41	82	10	97	28	28	20	23	1.99
41668277--41668337	29	2.1	29	93	0	104	39	18	16	26	1.91
41674512--41674553	21	2.0	21	100	0	84	23	14	19	42	1.87
41678746--41678784	18	2.2	17	86	13	53	33	0	20	46	1.51
41679011--41679108	23	4.3	23	88	0	124	22	19	26	31	1.98
41679312--41679358	23	2.0	25	83	8	62	40	0	21	38	1.53
41693228--41693268	22	2.0	21	85	9	57	53	4	17	24	1.63
41694396--41694554	79	2.0	79	93	0	273	32	15	13	38	1.85
41694652--41694867	42	5.1	42	86	1	254	22	16	24	37	1.93
41694650--41694867	84	2.6	85	81	5	280	22	16	23	38	1.93
41694650--41694913	126	2.1	126	82	3	307	23	15	23	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41695301--41695340	15	2.7	15	84	0	53	35	15	0	50	1.44
41695807--41695849	18	2.4	18	84	0	50	53	0	9	37	1.33
41697850--41697902	19	2.7	19	82	2	70	18	26	16	37	1.93
41710725--41710767	23	1.9	22	85	4	59	39	23	4	32	1.75
41716999--41717348	27	13.0	27	80	2	337	42	20	16	20	1.89
41717002--41717345	81	4.3	81	83	3	390	43	20	15	20	1.88
41717001--41717376	134	2.8	135	77	3	321	41	20	16	20	1.90
41719617--41719712	25	3.8	25	77	8	88	20	23	22	32	1.98
41725144--41725184	21	2.0	20	86	13	57	21	4	24	48	1.69
41732104--41732136	15	2.1	16	88	5	50	24	0	15	60	1.35
41733351--41733498	25	6.0	25	77	8	126	25	20	20	34	1.96
41737634--41737660	6	4.5	6	100	0	54	14	33	51	0	1.43
41738031--41738108	39	2.0	39	90	5	122	28	6	37	28	1.81
41739767--41739792	13	2.0	13	100	0	52	15	30	7	46	1.74
41742478--41742572	18	5.6	18	75	20	87	9	30	5	54	1.54
41742498--41742552	16	3.4	16	72	22	51	7	29	5	58	1.48
41742478--41742572	33	2.8	33	91	3	145	9	30	5	54	1.54
41742501--41742554	15	3.4	15	75	22	56	9	29	5	55	1.54
41742599--41742664	33	2.0	33	85	5	89	9	18	3	69	1.28
41750237--41750266	4	7.5	4	92	0	51	23	30	0	46	1.52
41759515--41759628	9	12.7	9	72	3	86	28	34	12	24	1.92
41759515--41759609	27	3.5	27	88	0	136	28	33	11	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41759515--41759628	27	4.2	27	86	2	104	28	34	12	24	1.92
41759744--41759827	41	2.0	41	93	0	141	30	10	10	47	1.72
41761449--41761523	37	2.0	37	97	0	141	24	14	32	29	1.95
41762936--41763030	27	3.5	27	79	0	82	28	28	12	30	1.93
41765804--41765917	20	5.7	19	79	7	93	27	24	16	31	1.96
41765814--41765911	40	2.5	40	79	3	108	28	23	15	32	1.95
41767435--41767474	14	2.7	16	81	18	59	70	10	15	5	1.32
41768552--41768586	18	1.9	18	88	11	54	68	5	14	11	1.37
41770362--41770479	10	12.0	9	69	17	67	25	27	18	28	1.98
41770360--41770486	20	6.3	20	90	3	168	24	26	18	30	1.98
41781599--41781632	8	4.1	8	88	7	50	88	0	2	8	0.62
41781604--41781632	9	3.3	9	90	9	51	89	0	0	10	0.48
41781599--41781632	17	2.0	17	94	0	59	88	0	2	8	0.62
41787654--41787735	27	2.7	30	87	10	107	15	21	30	31	1.95
41787653--41787844	105	1.8	105	90	0	312	20	21	27	29	1.98
41793492--41793527	11	3.4	11	88	3	56	63	8	5	22	1.43
41794765--41794806	22	2.0	21	90	4	66	33	0	11	54	1.37
41796025--41796087	28	2.3	28	94	2	110	31	25	22	20	1.98
41796440--41796840	27	14.9	27	78	2	358	19	15	21	43	1.87
41796769--41796832	25	2.5	25	84	5	74	20	14	17	48	1.81
41804626--41804700	33	2.2	34	90	2	116	42	12	6	38	1.68
41805815--41805867	27	2.0	27	88	0	79	7	26	0	66	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41806699--41806724	11	2.4	11	100	0	52	57	0	23	19	1.40
41812935--41812979	20	2.2	20	84	7	56	53	11	4	31	1.56
41813892--41814045	28	5.5	28	96	0	265	26	11	27	33	1.91
41813867--41814045	56	3.2	56	91	1	270	26	11	27	34	1.91
41821182--41821387	28	7.4	28	92	2	299	26	11	27	34	1.91
41821182--41821387	55	3.7	56	90	2	308	26	11	27	34	1.91
41821207--41821387	83	2.2	83	91	2	292	26	11	27	34	1.91
41826980--41827185	28	7.4	28	92	2	299	26	11	27	34	1.91
41826980--41827185	55	3.7	56	90	2	308	26	11	27	34	1.91
41827005--41827185	83	2.2	83	91	2	292	26	11	27	34	1.91
41832785--41832989	28	7.4	28	92	1	306	25	11	27	34	1.91
41832785--41832989	55	3.7	56	91	1	315	25	11	27	34	1.91
41832809--41832989	83	2.2	83	91	2	292	26	11	27	34	1.91
41836292--41836401	45	2.4	45	82	7	116	14	23	0	60	1.39
41836327--41836383	26	2.2	26	84	6	71	14	24	0	61	1.33
41846207--41846250	20	2.2	20	95	0	79	25	22	15	36	1.94
41848314--41848368	27	2.1	26	83	10	67	52	10	16	20	1.73
41856789--41856822	9	3.9	9	88	7	52	8	2	5	82	0.93
41860264--41860341	39	2.0	39	97	0	147	50	7	8	33	1.63
41863354--41863474	43	2.8	43	91	2	181	28	33	18	20	1.96
41864359--41864843	23	21.3	23	72	12	333	40	23	5	29	1.78
41864396--41864841	137	3.3	137	93	1	770	41	23	5	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41865179--41865262	39	2.1	39	86	4	114	51	7	11	29	1.65
41870015--41870102	18	4.8	18	68	15	54	10	23	1	64	1.31
41873164--41873210	26	2.0	23	84	16	60	25	0	4	70	1.05
41873158--41873210	15	3.8	15	70	27	53	26	0	5	67	1.12
41874293--41874371	8	10.5	8	79	17	80	36	43	0	20	1.52
41874279--41874371	23	4.1	23	81	9	111	34	44	1	20	1.59
41874366--41874400	15	2.4	14	86	9	52	40	37	0	22	1.55
41874541--41874618	33	2.4	33	84	0	93	38	39	3	17	1.68
41874667--41874695	15	1.9	15	100	0	58	44	34	0	20	1.52
41875475--41875797	41	7.9	41	86	4	447	30	28	22	18	1.97
41875846--41875968	40	3.1	38	81	4	129	23	21	19	34	1.96
41877519--41877574	20	2.8	21	78	13	64	39	14	25	21	1.91
41879389--41879508	56	2.1	56	96	0	222	45	9	22	22	1.80
41880637--41880861	40	5.7	40	86	5	296	24	22	28	25	2.00
41880637--41880868	119	1.9	119	82	6	290	25	21	28	25	1.99
41887357--41887476	56	2.1	56	98	0	231	45	9	23	22	1.81
41888600--41888824	40	5.7	40	84	5	260	24	20	28	26	1.99
41890810--41890905	18	5.5	17	77	8	88	7	17	2	72	1.17
41890826--41890872	24	2.0	24	95	0	85	8	12	4	74	1.19
41890810--41890905	6	16.5	6	69	6	72	7	17	2	72	1.17
41896303--41896354	20	2.5	20	84	9	61	75	1	19	3	1.06
41898027--41898098	33	2.1	34	89	2	110	38	8	12	40	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41900725--41900760	18	2.1	17	89	5	54	5	11	5	77	1.10
41901727--41901759	12	3.0	11	87	12	50	24	0	9	66	1.20
41901727--41901759	11	2.9	12	91	8	52	24	0	9	66	1.20
41905306--41905383	39	2.0	39	97	0	147	52	7	7	32	1.58
41910342--41910553	40	5.3	40	87	4	243	25	21	28	25	1.99
41910342--41910553	80	2.7	80	85	3	268	25	21	28	25	1.99
41910342--41910586	80	3.1	80	80	5	205	26	21	28	24	1.99
41915665--41915689	13	1.9	13	100	0	50	36	16	32	16	1.90
41919974--41920134	37	4.4	34	79	15	155	24	20	31	24	1.98
41919921--41920170	39	6.6	39	78	12	209	25	20	29	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240