genome.fa.s24.2.7.7.80.10.50.1000.232.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  232  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69898244--69898269	12	2.2	12	100	0	52	73	0	7	19	1.07
69898428--69898538	9	12.3	9	70	14	59	64	1	3	29	1.20
69898562--69898594	10	3.4	10	83	8	50	24	0	3	72	0.98
69906599--69906625	12	2.2	12	100	0	54	70	0	0	29	0.88
69906596--69906627	7	4.9	7	85	14	50	71	0	0	28	0.86
69907965--69908282	169	1.9	169	86	3	462	26	11	17	44	1.83
69909416--69909453	3	12.7	3	88	0	58	34	60	0	5	1.19
69909410--69909453	12	3.7	12	90	0	70	34	56	0	9	1.31
69909410--69909463	9	6.3	9	79	12	51	33	53	0	12	1.39
69911122--69911180	30	2.0	30	83	9	77	23	15	18	42	1.88
69912992--69913016	13	1.9	13	100	0	50	16	0	0	84	0.63
69924971--69925034	30	2.1	30	85	5	85	59	6	9	25	1.52
69925586--69925628	22	1.9	23	85	4	61	44	4	0	51	1.22
69933468--69933707	46	5.3	46	83	12	291	36	14	21	27	1.92
69933402--69933669	98	2.7	98	92	0	446	35	14	21	28	1.93
69933634--69933762	37	3.5	37	97	0	240	36	17	20	25	1.94
69935519--69935746	118	1.9	116	88	3	341	39	18	13	28	1.89
69939968--69940025	26	2.2	25	82	11	64	34	1	0	63	1.04
69939992--69940036	15	2.8	16	77	12	56	35	2	0	62	1.08
69949419--69949641	85	2.6	85	86	4	306	40	10	17	31	1.83
69952544--69952580	18	2.1	18	89	0	56	32	0	5	62	1.18
69958529--69958633	52	2.0	52	83	0	129	40	3	13	41	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69961428--69961470	13	3.1	14	80	10	52	39	0	2	58	1.11
69964041--69964092	25	2.1	25	82	7	61	32	5	9	51	1.58
69964125--69964173	15	3.3	15	72	11	55	69	2	6	22	1.21
69965948--69965987	21	1.9	21	94	0	71	55	5	12	27	1.58
69967125--69967160	18	2.0	18	88	0	54	27	0	5	66	1.13
69969514--69969548	3	11.7	3	87	0	52	31	34	2	31	1.73
69974082--69974115	13	2.6	13	95	0	59	58	8	0	32	1.29
69975303--69975417	40	2.9	39	80	5	133	37	20	20	22	1.94
69975468--69975666	41	4.9	41	89	0	272	20	22	28	28	1.98
69981170--69981311	43	3.3	43	86	2	187	19	16	29	33	1.94
69983065--69983098	16	2.1	16	88	0	50	20	5	0	73	1.04
69990297--69990461	90	1.9	88	90	2	267	40	26	11	21	1.87
69992179--69992203	7	3.6	7	100	0	50	12	0	0	88	0.53
70010260--70010290	10	3.1	10	95	0	53	16	58	25	0	1.38
70010307--70010369	31	2.0	32	85	11	87	69	4	0	25	1.07
70012331--70012369	19	2.0	20	85	5	53	46	7	0	46	1.31
70012283--70012459	91	1.9	91	88	0	264	40	7	8	43	1.64
70014610--70014651	22	1.9	22	85	9	59	4	4	19	71	1.22
70020160--70020188	13	2.1	14	93	6	51	13	0	10	75	1.04
70031456--70031506	23	2.1	25	85	7	70	39	1	7	50	1.42
70036513--70037188	300	2.3	294	86	4	936	28	11	20	39	1.87
70037583--70037902	159	2.0	158	86	3	394	31	11	23	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70041773--70041822	14	3.6	14	77	0	55	40	2	6	52	1.38
70048636--70048661	5	5.2	5	100	0	52	61	0	0	38	0.96
70050038--70050131	9	10.4	9	90	4	136	22	10	27	39	1.87
70050292--70050316	12	2.1	12	100	0	50	16	24	36	24	1.94
70060665--70061418	239	3.1	239	79	9	818	37	24	12	25	1.90
70062086--70062110	5	5.0	5	100	0	50	80	0	0	20	0.72
70062695--70062757	32	2.0	33	81	6	76	53	1	7	36	1.40
70063340--70063413	37	2.0	37	92	5	123	33	9	24	32	1.87
70076672--70076735	3	21.3	3	84	6	85	62	1	4	31	1.25
70077945--70077972	14	2.0	14	100	0	56	42	0	0	57	0.99
70079330--70079424	30	3.1	30	82	7	113	60	0	2	37	1.09
70079340--70079411	9	7.4	10	71	14	53	59	0	1	38	1.06
70079361--70079452	41	2.3	40	80	9	116	61	2	3	32	1.24
70081919--70081956	20	1.9	19	89	5	58	71	2	0	26	1.00
70082757--70082811	28	1.9	29	85	3	76	16	1	5	76	1.06
70085841--70085875	18	1.9	18	94	0	61	42	5	0	51	1.25
70086587--70086651	30	2.2	29	83	2	76	52	3	13	30	1.56
70088517--70088563	17	2.6	18	83	16	62	59	6	0	34	1.23
70096861--70096888	14	2.0	14	100	0	56	71	14	0	14	1.15
70100194--70100252	27	2.1	28	87	3	84	32	0	3	64	1.10
70100711--70100766	29	1.9	29	85	0	76	28	14	19	37	1.91
70100981--70101050	22	3.2	22	91	0	113	32	30	0	37	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70101022--70101080	30	2.0	30	96	0	109	32	35	0	32	1.58
70101000--70101102	52	2.0	51	84	5	136	33	33	0	33	1.58
70101052--70101093	22	1.9	22	90	0	66	33	33	0	33	1.58
70101136--70101197	29	2.1	29	85	5	81	35	0	1	62	1.05
70101543--70101598	29	1.9	29	85	0	76	28	14	19	37	1.91
70101812--70101881	22	3.2	22	91	0	113	32	30	0	37	1.58
70101853--70101911	30	2.0	30	96	0	109	32	35	0	32	1.58
70101831--70101933	52	2.0	51	84	5	136	33	33	0	33	1.58
70101883--70101924	22	1.9	22	90	0	66	33	33	0	33	1.58
70101965--70102020	28	2.0	29	89	3	87	35	0	1	62	1.06
70102120--70102164	22	2.0	23	86	4	65	28	0	6	64	1.19
70105392--70105657	124	2.1	124	86	1	372	30	22	15	30	1.95
70112469--70112493	13	1.9	13	100	0	50	84	0	0	16	0.63
70116406--70116477	5	14.8	5	74	21	64	38	0	4	56	1.18
70116435--70116477	19	2.3	19	92	8	70	41	0	0	58	0.98
70116914--70117047	44	3.0	45	83	4	162	35	13	23	27	1.93
70121532--70121567	3	12.0	3	100	0	72	33	0	0	66	0.92
70122162--70122368	106	2.0	105	94	0	360	30	19	18	31	1.96
70124657--70124724	5	13.8	5	75	20	63	38	0	4	57	1.19
70124686--70124726	19	2.3	19	91	8	68	41	0	0	58	0.98
70125166--70125299	44	3.0	45	83	4	162	35	13	23	27	1.93
70128039--70128153	8	12.8	8	70	20	68	64	2	2	30	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70128042--70128151	9	11.8	10	67	20	53	64	2	2	30	1.21
70128039--70128122	19	4.6	18	74	12	82	61	3	1	33	1.20
70128039--70128153	18	6.4	17	72	18	74	64	2	2	30	1.21
70129498--70129575	37	2.0	40	87	7	117	66	0	1	32	1.00
70129517--70129575	29	2.0	29	81	12	68	67	0	1	30	1.00
70132718--70132751	13	2.8	12	86	8	50	82	2	14	0	0.79
70132953--70133019	33	2.0	33	94	0	116	13	44	2	38	1.59
70133030--70133059	14	2.1	14	93	0	51	10	43	10	36	1.72
70134679--70134723	24	2.0	22	86	8	63	75	2	22	0	0.91
70135052--70135089	20	1.9	20	84	10	51	57	0	10	31	1.32
70135395--70135443	25	2.0	25	83	0	62	38	0	16	44	1.48
70141164--70141243	32	2.5	32	90	6	119	42	3	5	48	1.42
70143876--70143905	11	2.8	11	95	5	53	30	0	0	70	0.88
70149522--70149568	24	2.0	25	87	8	71	59	2	10	27	1.42
70152643--70152911	46	5.6	46	83	11	299	35	14	21	28	1.93
70152643--70152911	98	2.7	98	92	0	448	35	14	21	28	1.93
70152875--70153020	37	4.0	37	93	1	242	36	16	21	24	1.94
70156025--70156105	31	2.6	31	81	11	94	35	8	9	45	1.68
70156359--70156403	16	2.8	16	79	0	54	40	15	17	26	1.90
70160925--70160964	16	2.6	16	84	4	55	62	0	0	37	0.95
70162726--70162767	22	1.9	22	85	9	59	40	19	9	30	1.83
70163635--70163708	32	2.3	32	83	2	87	41	12	13	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70163831--70163910	31	2.6	32	78	13	94	37	10	7	45	1.66
70163795--70163925	31	4.2	30	74	14	90	38	11	7	41	1.70
70166512--70166590	28	2.8	28	73	22	92	77	2	12	7	1.08
70170493--70170537	21	2.1	21	100	0	90	28	17	4	48	1.66
70170704--70170755	15	3.6	15	80	12	56	44	0	1	53	1.11
70170670--70170991	120	2.7	120	97	0	617	42	1	5	50	1.36
70170953--70170994	15	2.7	16	82	14	52	45	0	2	52	1.13
70170944--70170985	15	2.9	15	82	10	52	47	0	0	52	1.00
70171163--70171230	16	4.4	16	78	14	79	33	33	0	32	1.58
70172235--70172300	31	2.1	31	83	8	80	53	4	1	40	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240