genome.fa.s24.2.7.7.80.10.50.1000.210.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  210  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63586352--63586401	21	2.4	21	86	6	66	40	0	18	42	1.50
63594549--63594614	16	3.7	18	70	12	55	33	0	9	57	1.30
63594549--63594621	18	4.1	17	71	15	58	36	0	8	54	1.30
63594591--63594633	19	2.3	18	80	4	50	32	0	6	60	1.23
63598041--63598091	25	2.0	25	96	0	93	70	7	9	11	1.33
63601866--63601956	42	2.2	42	86	2	121	47	18	4	29	1.68
63601974--63602013	19	2.2	18	95	4	71	42	15	2	40	1.60
63622440--63622556	22	5.5	22	75	15	113	37	3	0	58	1.15
63622474--63622561	11	8.2	11	76	10	58	36	2	0	61	1.09
63622441--63622529	41	2.2	41	91	2	144	35	3	0	60	1.13
63622452--63622558	23	4.9	22	76	15	105	37	3	0	58	1.16
63629964--63630062	11	9.5	11	67	24	54	40	2	0	57	1.10
63629949--63630072	41	3.3	40	74	24	144	36	1	0	62	1.05
63629957--63630031	30	2.4	32	91	8	127	38	2	0	58	1.12
63630020--63630053	17	2.0	17	88	0	50	35	0	0	64	0.94
63630043--63630099	21	2.6	22	77	8	62	45	0	0	54	0.99
63630021--63630092	32	2.4	29	78	19	76	38	0	0	61	0.96
63630551--63630604	27	2.0	27	88	0	81	38	0	0	61	0.96
63640245--63640293	23	2.1	24	85	14	68	16	8	24	51	1.71
63641487--63641683	25	8.0	25	73	14	169	47	6	8	38	1.58
63641482--63641664	48	3.8	48	95	0	321	48	6	8	37	1.59
63641503--63641703	96	2.1	95	85	6	264	48	5	6	39	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63645271--63645479	92	2.3	91	85	5	269	46	3	3	45	1.39
63645407--63645454	26	1.9	25	84	16	64	45	0	2	52	1.12
63645533--63645755	66	3.6	63	69	21	195	42	2	5	49	1.41
63645495--63645784	120	2.4	120	93	3	478	42	2	4	50	1.36
63645620--63645671	15	3.6	15	80	12	56	44	0	1	53	1.11
63645557--63645755	61	3.3	61	68	17	189	42	2	6	49	1.40
63645724--63646034	151	2.0	154	93	3	529	46	4	3	45	1.40
63645887--63645921	18	2.0	17	88	5	52	45	0	0	54	0.99
63645725--63645957	75	3.1	75	64	15	190	45	3	3	47	1.36
63646153--63646198	16	2.9	16	96	0	83	26	34	0	39	1.57
63646155--63646208	16	3.4	15	87	10	72	31	31	0	37	1.58
63646936--63647001	27	2.4	28	97	2	125	42	9	0	48	1.35
63647027--63647089	27	2.3	27	91	0	108	17	30	28	23	1.97
63647856--63647910	28	2.0	28	85	7	76	32	7	0	60	1.24
63650141--63650170	15	2.0	15	93	0	51	20	13	50	16	1.78
63650984--63651014	15	2.1	15	93	0	53	45	6	16	32	1.72
63669938--63669976	21	1.9	20	89	5	60	20	0	35	43	1.52
63672704--63672740	13	2.9	13	96	4	67	54	0	8	37	1.30
63683320--63683536	41	5.3	41	90	0	344	23	28	19	28	1.99
63685064--63685088	13	1.9	13	100	0	50	68	24	0	8	1.16
63687948--63688141	41	4.7	41	93	1	325	26	20	29	23	1.99
63687948--63688141	83	2.3	82	92	2	325	26	20	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63696843--63697121	96	2.9	96	78	0	263	34	15	18	31	1.92
63697038--63697121	44	1.9	44	87	0	123	32	21	20	26	1.98
63698507--63698720	69	3.2	67	82	10	271	28	8	1	61	1.35
63698531--63698855	69	5.2	61	68	21	197	30	8	1	59	1.36
63698633--63698677	21	2.0	23	84	16	60	24	6	0	68	1.13
63698657--63698772	52	2.2	51	86	4	153	31	6	0	60	1.29
63698709--63698873	70	2.3	72	85	4	208	30	7	1	60	1.34
63703053--63703083	16	1.9	16	93	0	53	67	22	3	6	1.28
63707577--63707618	18	2.3	18	84	8	50	38	4	2	54	1.34
63720384--63720451	1	68.0	1	94	0	118	97	0	0	2	0.19
63720375--63720451	40	1.9	40	94	0	136	94	0	0	5	0.29
63722142--63722171	15	2.0	15	93	0	51	20	13	50	16	1.78
63722982--63723012	15	2.1	15	93	0	53	45	6	16	32	1.72
63740878--63740959	41	2.0	41	86	9	114	25	18	10	45	1.82
63742137--63742175	21	1.9	20	89	5	60	20	0	35	43	1.52
63744915--63744951	13	2.9	13	96	4	67	54	0	8	37	1.30
63745574--63746106	9	59.9	9	74	9	362	47	13	3	35	1.61
63745574--63746061	27	17.6	27	81	7	478	47	13	3	36	1.58
63745574--63746061	54	8.8	54	84	10	554	47	13	3	36	1.58
63751611--63751706	21	4.4	21	78	10	86	38	18	40	2	1.63
63751665--63751703	12	3.2	12	100	0	78	41	17	41	0	1.50
63752122--63752410	41	6.9	41	84	7	325	25	21	22	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63752122--63752432	42	7.4	42	85	5	353	26	21	22	29	1.99
63760742--63760788	18	2.7	18	80	9	53	23	0	4	72	1.02
63761139--63761186	16	2.9	16	75	6	51	81	6	4	8	0.98
63806612--63806780	87	2.0	86	89	3	259	27	13	17	42	1.86
63812968--63813012	22	2.0	22	91	0	72	48	15	2	33	1.57
63816745--63816789	22	2.0	22	91	0	72	48	15	2	33	1.57
63821365--63821435	31	2.3	31	85	0	97	26	14	19	39	1.90
63821118--63821474	184	1.9	185	86	2	504	29	9	19	41	1.83
63824070--63824109	20	2.0	21	95	5	73	40	0	7	52	1.30
63829381--63829411	12	2.6	12	94	0	53	38	0	0	61	0.96
63829502--63829532	11	2.9	11	95	4	55	41	0	0	58	0.98
63829313--63829610	121	2.4	123	96	2	557	34	20	14	30	1.92
63830015--63830094	40	2.1	38	83	9	99	58	2	6	32	1.36
63830015--63830093	42	2.0	38	83	14	97	58	2	6	32	1.37
63830371--63830426	3	18.3	3	76	10	51	66	3	1	28	1.19
63832598--63832693	48	2.0	48	89	0	147	44	19	14	20	1.86
63837732--63837827	48	2.0	48	91	0	156	42	19	15	21	1.88
63841629--63841871	17	13.6	17	70	10	139	48	9	12	29	1.72
63841630--63841868	35	6.8	34	75	10	158	48	9	12	29	1.72
63841784--63841881	35	2.7	35	85	6	117	46	5	14	33	1.66
63841826--63841881	17	3.2	17	80	9	69	39	5	14	41	1.68
63841986--63842046	21	3.3	18	74	17	54	36	11	18	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63841987--63842029	21	2.1	21	91	4	70	37	9	16	37	1.81
63842193--63842230	17	2.3	16	90	4	58	60	0	5	34	1.19
63842380--63842499	9	12.7	10	69	25	75	0	17	1	80	0.79
63842384--63842499	8	14.6	8	77	16	75	0	17	1	81	0.78
63842383--63842475	17	5.3	17	76	22	77	0	17	2	80	0.81
63842380--63842499	19	6.9	18	75	18	105	0	17	1	80	0.79
63842380--63842498	18	6.9	16	74	23	84	0	17	1	80	0.79
63842614--63842657	19	2.5	17	81	7	52	2	9	11	77	1.08
63842690--63842740	18	2.7	18	81	9	57	7	23	50	17	1.72
63842790--63842841	3	15.7	3	84	15	59	1	32	0	65	1.04
63842790--63842841	10	5.5	10	80	15	58	1	32	0	65	1.04
63842790--63842841	13	3.9	13	85	14	63	1	32	0	65	1.04
63843197--63843276	29	2.8	28	92	5	133	42	6	21	30	1.77
63843275--63843317	15	3.1	15	77	16	56	20	0	6	72	1.08
63843292--63843324	11	2.9	12	86	13	52	24	0	6	69	1.10
63845671--63845753	41	2.0	41	90	0	130	62	8	9	19	1.51
63851116--63851167	15	3.6	15	80	12	56	44	0	1	53	1.11
63851066--63851283	120	1.8	120	96	1	411	43	1	6	48	1.39
63851245--63851286	15	2.7	16	82	14	52	45	0	2	52	1.13
63851236--63851277	15	2.9	15	82	10	52	47	0	0	52	1.00
63851412--63851521	45	2.6	43	79	13	122	32	28	5	33	1.80
63851502--63851569	16	4.2	16	94	0	118	35	36	0	27	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63854349--63854390	18	2.3	19	80	19	54	42	2	4	50	1.36
63854370--63854432	27	2.3	27	84	10	85	31	1	3	63	1.19
63857315--63857366	18	2.8	19	75	21	56	30	1	3	63	1.23
63857274--63857366	42	2.2	42	79	11	102	33	4	4	58	1.37
63857755--63857790	17	2.1	17	89	0	54	52	5	0	41	1.24
63859101--63859247	69	2.2	64	87	10	199	29	12	13	44	1.81
63860116--63860170	28	1.9	29	85	3	76	41	41	0	16	1.48
63860139--63860313	89	2.0	89	88	0	260	45	29	1	24	1.61
63860151--63860338	89	2.1	89	84	1	250	45	26	1	26	1.63
63860331--63860391	14	4.4	14	81	8	61	32	44	0	22	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240