genome.fa.s24.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  183  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56375875--56376196	77	4.1	77	79	6	310	45	12	12	29	1.79
56375872--56376159	154	1.8	156	81	9	363	45	12	12	29	1.78
56376040--56376211	83	2.1	83	79	6	188	45	13	12	28	1.79
56388878--56388917	20	2.0	20	95	0	71	5	27	25	42	1.75
56390913--56390948	18	1.9	19	88	5	56	33	19	2	44	1.65
56391417--56391482	33	2.0	33	100	0	132	39	15	18	27	1.90
56395816--56395862	21	2.2	22	84	3	60	44	46	4	4	1.42
56396231--56396367	27	5.2	25	73	13	105	18	15	19	46	1.84
56396231--56396367	54	2.6	53	82	9	163	18	15	19	46	1.84
56402239--56402784	284	1.9	284	87	0	806	28	24	13	33	1.93
56415340--56415442	49	2.3	41	74	22	116	33	2	26	36	1.71
56415352--56415448	49	2.0	49	97	0	185	36	4	25	34	1.75
56424148--56424242	25	3.8	25	67	18	72	28	22	21	28	1.99
56424380--56424417	17	2.2	17	100	0	76	34	18	10	36	1.85
56425934--56426046	54	2.1	54	83	1	138	17	21	18	42	1.89
56425934--56426046	27	4.2	27	81	3	122	17	21	18	42	1.89
56428657--56428848	102	1.9	104	91	2	316	35	27	16	21	1.94
56469209--56469279	27	2.6	27	86	2	97	36	18	21	23	1.95
56469364--56469409	24	1.9	24	81	0	56	26	13	19	41	1.88
56469600--56469770	32	5.4	33	78	9	151	19	19	21	39	1.92
56469597--56469768	63	2.7	64	86	4	224	19	19	20	39	1.93
56469761--56469825	22	3.0	22	74	0	67	18	20	16	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56469980--56470045	28	2.4	28	82	2	89	19	25	22	31	1.98
56480575--56480982	27	15.1	27	86	0	485	18	18	21	41	1.90
56481648--56481689	12	3.5	12	78	12	50	26	40	0	33	1.56
56490411--56490435	8	3.1	8	100	0	50	24	0	0	76	0.80
56500892--56501301	27	15.2	26	77	5	343	41	21	16	19	1.90
56500892--56501301	81	5.0	81	80	1	426	41	21	16	19	1.90
56500892--56501301	54	7.6	54	81	2	419	41	21	16	19	1.90
56503766--56503912	40	3.7	40	77	0	141	29	12	25	31	1.93
56505736--56505898	40	4.1	40	82	0	191	26	15	25	31	1.95
56508548--56508595	22	2.3	22	85	7	64	60	8	4	27	1.44
56518470--56518506	15	2.5	15	90	0	56	2	16	51	29	1.58
56518483--56518517	15	2.3	15	90	0	52	8	14	42	34	1.76
56519775--56520050	111	2.5	108	85	4	351	34	17	15	32	1.91
56519735--56520050	111	2.9	107	82	3	341	35	16	16	32	1.91
56520672--56520817	3	49.0	3	75	1	132	58	4	4	32	1.38
56521714--56521753	20	2.0	20	90	0	62	15	25	45	15	1.84
56522333--56522436	44	2.4	44	80	3	111	29	19	19	31	1.96
56522408--56522609	41	4.8	41	70	9	145	28	19	22	29	1.98
56522327--56522699	129	2.9	129	85	0	487	27	20	21	31	1.98
56522359--56522740	44	8.8	44	72	10	204	26	20	21	30	1.98
56522757--56522981	45	5.0	45	88	0	306	30	25	17	27	1.97
56534624--56535027	108	3.8	106	85	4	510	37	18	13	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56534624--56535046	214	2.0	211	85	5	566	37	17	13	30	1.90
56535069--56535113	21	2.2	20	84	11	56	57	2	11	28	1.45
56535222--56535262	19	2.2	19	83	16	50	68	4	9	17	1.35
56535658--56535797	3	47.0	3	68	4	59	54	7	5	33	1.50
56539246--56539342	50	2.0	50	85	6	135	60	3	16	19	1.48
56539299--56539350	27	1.9	27	81	14	63	65	5	15	13	1.44
56540888--56540945	19	2.7	22	84	10	68	36	8	17	37	1.80
56543606--56543650	19	2.4	19	85	7	56	26	24	11	37	1.89
56551919--56552132	45	4.8	45	84	1	259	28	17	22	30	1.97
56551916--56552134	90	2.4	90	86	0	285	29	17	23	30	1.97
56553421--56553465	23	2.0	23	100	0	90	57	4	26	11	1.52
56556745--56556900	73	2.2	71	85	2	204	30	23	23	23	1.99
56556745--56557205	192	2.5	187	86	5	651	26	23	25	24	2.00
56556979--56557445	114	4.1	115	89	2	681	24	21	25	27	1.99
56557661--56557891	7	32.4	7	70	13	89	18	3	35	43	1.65
56557651--56557717	22	3.0	21	80	8	80	14	5	43	35	1.71
56557737--56557810	8	9.8	8	83	5	66	17	1	37	43	1.58
56557737--56557810	15	4.9	15	81	5	78	17	1	37	43	1.58
56557833--56557981	62	2.4	63	78	10	171	17	2	28	51	1.56
56557942--56557982	14	2.9	15	75	14	50	14	0	24	60	1.34
56557829--56557981	21	7.4	21	67	7	53	17	1	30	50	1.57
56557970--56558177	103	2.0	103	93	0	355	26	3	31	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56557996--56558054	24	2.4	24	78	10	66	25	3	37	33	1.73
56560204--56560485	9	32.3	9	72	13	214	44	20	2	32	1.64
56560203--56560417	79	2.7	78	87	5	299	45	20	1	32	1.60
56560205--56560485	43	6.7	43	71	15	185	44	20	2	32	1.64
56560204--56560496	52	5.6	51	75	11	202	45	20	2	32	1.63
56566012--56566060	21	2.3	21	89	0	80	34	20	40	4	1.71
56566443--56566754	42	7.4	41	85	5	374	25	18	21	33	1.96
56566505--56566735	83	2.8	82	89	4	345	27	19	21	31	1.97
56566443--56566754	85	3.7	86	83	3	373	25	18	21	33	1.96
56566783--56566816	17	2.0	17	100	0	68	29	5	17	47	1.71
56568448--56568607	45	3.6	44	80	3	167	42	13	18	25	1.87
56568448--56568628	45	4.0	44	75	9	150	41	13	19	24	1.88
56568484--56568649	90	1.8	90	83	5	219	42	14	19	22	1.88
56569089--56569113	10	2.5	10	100	0	50	44	12	0	44	1.41
56570613--56570752	40	3.5	40	87	0	190	31	16	31	20	1.95
56570651--56570715	20	3.2	20	68	8	60	29	15	33	21	1.94
56580165--56580291	63	2.0	63	82	8	152	23	29	21	25	1.99
56581093--56581132	21	2.0	21	90	5	64	52	22	5	20	1.65
56583818--56583864	14	3.4	14	77	16	53	0	19	4	76	0.95
56592234--56592277	20	2.2	20	95	0	79	56	9	6	27	1.55
56597907--56598116	74	2.8	75	89	0	323	30	28	19	20	1.97
56598091--56598144	27	2.0	28	96	3	101	25	29	24	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56598017--56598245	104	2.2	101	89	3	350	29	28	21	20	1.98
56605017--56605223	33	5.7	33	70	19	137	29	28	20	20	1.98
56605018--56605227	74	2.8	74	90	2	323	29	29	20	20	1.98
56605202--56605255	28	1.9	28	92	0	90	25	27	24	22	2.00
56605128--56605361	104	2.3	101	88	3	344	29	27	20	21	1.98
56605954--56605987	11	2.8	12	91	8	52	35	8	11	44	1.72
56607210--56607254	23	2.0	23	81	0	54	60	0	6	33	1.23
56607305--56607333	14	2.0	15	93	6	51	41	6	0	51	1.28
56613169--56613212	11	3.9	11	84	3	61	65	0	2	31	1.05
56613169--56613212	12	3.8	12	82	17	58	65	0	2	31	1.05
56613257--56613307	18	2.8	18	83	13	68	27	0	0	72	0.85
56613263--56613308	20	2.1	23	88	11	71	28	0	0	71	0.86
56614820--56614849	8	3.8	8	90	0	51	60	0	40	0	0.97
56616292--56616316	11	2.3	11	100	0	50	52	8	0	40	1.31
56642821--56642936	43	2.7	43	80	9	139	18	17	30	33	1.94
56649556--56649593	18	2.2	18	86	9	53	34	0	2	63	1.09
56649881--56649912	15	2.0	17	88	11	50	40	0	3	56	1.15
56652337--56652379	22	1.9	23	90	4	70	20	6	4	67	1.33
56658285--56658373	45	2.0	45	93	0	151	23	21	20	34	1.96
56659285--56659311	5	5.4	5	100	0	54	0	0	18	81	0.69
56661754--56661827	36	2.1	36	100	0	148	36	27	2	33	1.71
56671309--56671484	27	6.5	27	87	2	255	42	18	18	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56671309--56671510	54	3.7	53	84	6	255	41	17	18	22	1.91
56671309--56671510	81	2.5	79	84	6	251	41	17	18	22	1.91
56671719--56671795	26	3.0	26	76	14	86	18	22	23	36	1.95
56685596--56685664	29	2.4	29	81	11	88	59	1	2	36	1.21
56685788--56685826	3	13.3	3	94	5	71	64	0	0	35	0.94
56686462--56686517	29	1.9	29	85	0	76	25	7	10	57	1.58
56689455--56689503	25	2.0	25	84	8	64	63	6	4	26	1.36
56693666--56693717	24	2.2	24	85	0	68	38	3	7	50	1.50
56697100--56697131	16	2.0	16	100	0	64	37	12	37	12	1.81
56698073--56698124	24	2.2	24	89	0	77	38	1	7	51	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240