genome.fa.s24.2.7.7.80.10.50.1000.213.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  213  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64317783--64317865	42	2.0	43	85	7	116	22	25	13	38	1.91
64317836--64317959	47	2.7	46	84	2	158	29	25	15	29	1.96
64317978--64318156	31	5.8	31	89	5	238	27	25	18	28	1.98
64318132--64318260	50	2.5	51	87	5	190	26	22	16	34	1.95
64321139--64321258	63	1.9	63	85	0	168	25	5	32	35	1.80
64324312--64324391	39	2.1	39	92	0	133	43	8	11	36	1.71
64325778--64325855	39	2.0	39	94	0	138	47	12	7	32	1.70
64325780--64325843	21	3.2	21	64	20	55	46	12	9	31	1.73
64325782--64325864	39	2.1	39	88	4	123	48	13	6	32	1.67
64328006--64328040	3	11.7	3	100	0	70	65	0	0	34	0.93
64328889--64328935	20	2.3	20	86	13	78	44	6	0	48	1.28
64337908--64337995	18	4.9	18	83	2	106	34	14	22	28	1.94
64337923--64337990	35	1.9	35	93	3	118	35	10	22	32	1.88
64339852--64339886	17	1.9	19	88	11	56	42	0	5	51	1.25
64341380--64341416	15	2.3	17	86	9	51	29	2	8	59	1.40
64344162--64344200	18	2.2	18	86	9	53	61	0	5	33	1.18
64345670--64345723	22	2.5	22	72	6	56	44	7	9	38	1.65
64346697--64346727	11	2.8	11	95	0	53	19	48	3	29	1.64
64347273--64347365	18	5.2	18	90	0	150	27	24	16	31	1.96
64351419--64351449	11	2.8	11	95	0	53	19	48	3	29	1.64
64355027--64355062	15	2.4	15	95	0	63	58	8	0	33	1.28
64363902--64364010	42	2.6	42	85	8	152	32	12	22	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64365762--64365803	21	2.0	20	90	4	66	28	7	0	64	1.20
64365769--64365810	18	2.4	18	84	11	52	28	7	0	64	1.20
64374477--64374527	21	2.4	22	77	6	61	37	3	37	21	1.72
64375001--64375037	20	2.0	20	89	10	60	72	0	0	27	0.84
64375000--64375059	15	3.8	17	73	24	51	68	0	0	31	0.90
64375012--64375053	12	3.4	13	80	9	52	69	0	0	30	0.89
64384959--64385926	213	4.6	213	91	2	1483	33	20	15	30	1.94
64384981--64385926	424	2.2	425	90	3	1507	34	20	15	30	1.93
64390675--64390713	11	3.6	11	86	6	62	38	17	2	41	1.64
64394570--64394645	3	24.0	3	72	19	57	63	0	2	34	1.09
64402274--64402315	22	1.9	22	85	9	59	19	4	40	35	1.72
64405578--64405687	3	37.0	3	70	13	50	63	3	4	28	1.31
64410442--64410476	12	3.0	12	87	4	54	51	8	31	8	1.63
64411493--64411522	15	2.0	15	100	0	60	26	6	20	46	1.75
64412810--64412868	21	2.8	21	78	12	59	69	8	0	22	1.15
64414988--64415120	47	2.8	49	78	14	161	30	27	19	22	1.98
64415541--64415600	30	2.0	30	83	6	77	28	25	8	38	1.84
64422506--64422679	47	3.7	47	77	12	187	30	27	18	22	1.98
64422514--64422684	94	1.8	93	89	1	270	29	26	20	22	1.98
64423096--64423154	30	2.0	30	86	6	84	30	27	5	37	1.78
64428946--64428986	20	2.0	20	90	9	66	34	4	0	60	1.18
64429000--64429031	16	2.0	16	93	0	55	65	0	3	31	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64430153--64430874	241	3.0	240	96	0	1345	32	22	7	37	1.82
64435125--64435175	25	2.0	26	84	3	68	25	9	0	64	1.24
64435145--64435188	24	2.0	23	86	13	65	20	11	0	68	1.20
64435135--64435186	26	2.0	25	92	3	86	21	9	0	69	1.17
64435170--64435208	14	2.8	14	92	0	60	23	7	0	69	1.14
64435292--64435986	348	2.0	345	91	1	1133	30	18	16	34	1.93
64436876--64436902	2	13.5	2	100	0	54	51	0	0	48	1.00
64438547--64438594	14	3.6	14	75	8	55	64	0	0	35	0.94
64440957--64441032	30	2.5	30	80	4	82	39	0	2	57	1.12
64443335--64443366	16	2.0	16	100	0	64	25	18	6	50	1.70
64443963--64444027	32	2.0	32	100	0	130	26	24	15	33	1.95
64446372--64446405	17	1.9	18	88	5	52	52	23	2	20	1.60
64446662--64446688	13	2.1	13	100	0	54	37	14	7	40	1.74
64454674--64454744	16	4.4	16	81	10	83	38	1	26	33	1.65
64455094--64455128	15	2.2	16	90	5	54	57	2	5	34	1.37
64457281--64457361	40	2.0	40	92	0	135	48	22	8	20	1.77
64459833--64461345	213	7.1	213	90	1	2208	33	20	16	30	1.94
64461383--64461423	3	13.7	3	100	0	82	31	0	0	68	0.90
64465752--64465783	3	10.7	3	100	0	64	31	0	0	68	0.90
64465784--64465969	73	2.5	73	99	0	363	27	6	24	40	1.80
64466173--64469099	213	13.7	213	88	2	4148	33	20	16	30	1.94
64469642--64469681	14	2.9	14	81	3	55	30	0	2	67	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64472811--64472862	24	2.2	24	89	0	77	55	9	1	32	1.43
64474782--64474833	24	2.2	24	89	0	77	55	9	1	32	1.43
64475873--64476005	41	3.3	40	86	3	167	35	23	22	18	1.96
64475978--64476113	41	3.3	41	88	2	211	21	18	32	27	1.97
64475937--64476113	82	2.2	82	79	6	189	23	20	29	25	1.99
64476085--64476143	29	2.0	29	93	0	100	11	20	28	38	1.88
64476461--64476511	18	2.8	18	84	3	66	45	1	1	50	1.24
64476934--64476965	15	2.1	15	94	0	55	59	0	9	31	1.29
64481817--64481884	24	2.8	24	89	8	111	27	20	7	44	1.78
64482061--64482116	15	3.8	15	77	13	71	44	1	0	53	1.11
64482221--64482446	9	24.6	9	75	8	134	47	12	1	38	1.50
64482221--64482446	18	12.3	18	74	9	152	47	12	1	38	1.50
64482249--64482470	114	1.9	114	86	3	313	47	12	0	38	1.48
64487654--64487682	14	2.1	14	93	6	51	34	0	6	58	1.25
64488094--64488134	21	2.0	21	95	0	73	26	19	53	0	1.45
64488507--64488633	42	3.0	43	89	1	202	23	22	20	33	1.97
64493526--64493653	63	2.0	63	100	0	256	39	20	30	9	1.84
64497921--64498003	41	2.0	41	100	0	166	34	14	24	26	1.94
64499189--64499288	49	2.0	49	100	0	200	48	15	18	19	1.82
64509493--64509518	3	8.7	3	100	0	52	0	34	0	65	0.93
64510704--64510750	18	2.6	18	93	0	76	29	10	23	36	1.89
64517427--64517577	75	2.0	75	90	2	241	18	29	13	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64522402--64522560	77	2.2	71	84	8	203	27	15	25	32	1.96
64527203--64527327	42	2.9	42	79	9	126	26	19	22	32	1.97
64527222--64527358	43	3.2	43	78	9	136	27	18	22	31	1.97
64528510--64528599	35	2.4	38	74	22	91	64	1	6	27	1.25
64531070--64531139	25	2.8	26	76	8	83	51	17	21	10	1.74
64533289--64533436	37	4.0	37	93	0	251	37	13	20	28	1.91
64533398--64533521	46	2.8	46	87	3	182	34	15	21	28	1.94
64537263--64537472	107	2.0	107	89	1	323	47	12	5	34	1.65
64539246--64539285	20	2.0	21	90	5	64	35	2	30	32	1.71
64541992--64542036	11	4.3	11	81	16	51	26	22	0	51	1.49
64542002--64542053	11	4.9	11	81	9	54	28	25	0	46	1.53
64541992--64542053	20	2.9	22	83	13	69	29	24	0	46	1.53
64542080--64542110	15	2.1	15	93	0	53	22	6	0	70	1.09
64543845--64543884	17	2.3	18	91	4	64	20	20	15	45	1.86
64544274--64544772	116	4.3	116	96	0	899	40	3	8	47	1.52
64547769--64548306	126	4.3	126	89	3	816	27	21	17	33	1.96
64548416--64548591	96	1.8	98	83	4	241	41	14	1	42	1.55
64549048--64549092	21	2.1	21	91	0	72	66	6	11	15	1.42
64549048--64549099	21	2.5	21	87	3	61	65	5	11	17	1.44
64549130--64549185	27	2.1	27	89	0	85	14	30	30	25	1.95
64549728--64549783	27	2.1	27	96	0	103	25	28	28	17	1.98
64549820--64549861	21	2.0	21	90	0	66	21	11	2	64	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64550946--64550995	22	2.3	22	83	13	59	52	6	0	42	1.26
64562712--64562766	22	2.5	24	80	11	64	52	3	0	43	1.18
64563057--64563109	3	17.3	3	92	3	88	66	0	0	33	0.92
64563945--64564013	35	2.0	35	100	0	138	20	11	50	17	1.76
64564742--64564775	16	2.1	16	88	0	50	64	5	11	17	1.45
64564794--64565324	192	2.8	193	97	0	992	35	21	13	29	1.92
64584023--64584065	11	3.7	11	82	11	50	18	4	2	74	1.10
64585152--64585225	32	2.2	35	83	13	102	44	2	2	50	1.30
64585680--64585736	27	2.2	26	83	3	69	54	1	3	40	1.28
64586320--64586360	18	2.3	18	87	4	57	29	0	0	70	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240