genome.fa.s24.2.7.7.80.10.50.1000.217.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  217  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65455345--65455389	23	2.0	23	95	0	81	48	0	6	44	1.29
65455333--65455402	23	2.6	27	74	23	76	45	1	4	48	1.30
65458420--65458444	13	1.9	13	100	0	50	16	12	0	72	1.13
65480495--65480534	17	2.5	15	84	8	53	55	0	15	30	1.41
65486672--65486707	18	1.9	18	88	5	54	47	5	25	22	1.73
65490626--65490720	18	5.3	18	88	0	136	30	24	14	30	1.95
65490626--65490720	36	2.6	36	94	0	163	30	24	14	30	1.95
65499997--65500049	24	2.2	23	83	12	63	43	1	0	54	1.11
65509636--65511942	953	2.4	958	91	2	3761	30	12	22	34	1.91
65517142--65517300	56	2.8	56	97	0	291	34	13	16	35	1.87
65519585--65519642	20	2.8	21	81	5	73	32	5	24	37	1.77
65533864--65533908	22	2.0	22	91	0	72	46	6	20	26	1.75
65534208--65534233	11	2.4	11	100	0	52	61	0	0	38	0.96
65537528--65537570	20	2.2	20	86	0	59	44	6	0	48	1.29
65543157--65543199	20	2.1	21	86	4	61	30	0	9	60	1.28
65544862--65544936	27	2.8	27	78	9	82	44	0	17	38	1.49
65547439--65547469	11	2.8	11	95	0	53	19	48	3	29	1.64
65548014--65548106	18	5.2	18	93	0	159	27	23	17	31	1.97
65552154--65552184	11	2.8	11	95	0	53	19	48	3	29	1.64
65556985--65557015	16	1.9	16	93	0	53	61	0	0	38	0.96
65557038--65557090	25	2.0	27	82	7	65	49	1	1	47	1.23
65559323--65559369	21	2.1	23	84	7	62	21	19	38	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65559269--65559370	21	4.8	20	65	17	55	27	23	30	18	1.98
65559573--65559722	30	5.0	30	77	0	129	16	35	32	15	1.90
65559573--65559713	60	2.3	60	84	4	169	17	35	32	14	1.90
65559608--65559729	60	2.0	60	85	0	163	15	36	32	14	1.88
65565304--65565351	21	2.3	21	82	3	53	33	14	25	27	1.94
65565564--65565599	10	3.6	10	84	0	54	22	0	2	75	0.94
65565609--65565656	19	2.5	19	83	13	62	37	0	6	56	1.25
65570760--65570817	26	2.5	22	73	26	64	43	3	0	53	1.17
65571438--65571557	63	1.9	62	81	8	145	56	15	5	22	1.60
65572065--65572109	22	2.0	22	82	4	54	53	0	44	2	1.13
65573390--65573454	28	2.5	25	82	12	78	46	4	3	46	1.39
65574733--65574758	11	2.4	11	100	0	52	38	0	0	61	0.96
65574741--65574780	19	2.1	19	90	0	62	37	0	0	62	0.95
65574745--65574787	19	2.2	19	83	4	50	34	0	4	60	1.17
65575507--65575539	17	2.0	17	94	5	59	30	0	0	69	0.88
65575806--65575853	11	3.5	14	78	21	57	54	4	6	35	1.45
65579662--65579755	48	2.0	47	91	4	154	28	29	2	39	1.69
65586308--65586363	25	2.3	26	81	9	64	17	25	21	35	1.95
65600922--65601037	45	2.6	45	92	0	187	25	19	13	40	1.89
65606464--65606501	15	2.5	15	100	0	76	15	10	5	68	1.36
65607237--65607352	45	2.6	45	98	0	223	25	19	13	40	1.89
65615142--65615178	9	4.1	9	89	0	56	54	13	2	29	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65615392--65615451	30	2.0	31	83	9	79	20	38	0	41	1.52
65615707--65615735	9	3.2	9	100	0	58	31	0	0	68	0.89
65616939--65616984	23	2.0	23	95	0	83	30	15	21	32	1.94
65619803--65619848	24	2.0	24	87	8	69	50	17	8	23	1.74
65624036--65624072	16	2.1	19	85	14	53	75	8	13	2	1.13
65625004--65625492	45	11.0	45	72	11	355	26	23	18	31	1.97
65625026--65625487	89	5.2	89	90	1	676	26	23	18	31	1.98
65625090--65625485	44	8.9	44	76	4	375	26	23	18	31	1.97
65626755--65626848	47	2.0	47	87	2	134	13	28	13	43	1.83
65626763--65626865	47	2.1	48	80	3	118	12	28	13	45	1.80
65632300--65632336	16	2.1	19	85	14	53	75	8	13	2	1.13
65633108--65633189	26	3.2	26	100	0	164	24	23	7	45	1.78
65639125--65639182	30	1.9	30	100	0	116	43	12	3	41	1.59
65640747--65640804	30	1.9	30	85	0	80	34	10	17	37	1.84
65650567--65650620	20	2.7	20	80	11	65	64	3	0	31	1.11
65650573--65650612	21	1.9	21	90	10	64	67	5	0	27	1.11
65650766--65650809	20	2.2	20	84	8	54	45	2	0	52	1.13
65651343--65651407	11	5.8	12	79	15	68	24	30	1	43	1.64
65652601--65652626	7	3.7	7	100	0	52	26	0	15	57	1.38
65653879--65654253	125	3.0	125	92	0	606	31	22	16	29	1.96
65656187--65656450	42	6.2	42	89	1	366	31	21	22	23	1.98
65656200--65656450	127	2.0	128	91	0	405	32	21	21	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65656187--65656494	85	3.6	84	84	3	377	31	22	22	24	1.99
65656200--65656492	127	2.3	127	87	4	403	31	21	22	24	1.98
65656929--65656956	12	2.3	12	100	0	56	0	42	17	39	1.50
65656941--65656998	21	2.8	21	78	5	64	3	37	20	37	1.70
65662518--65662672	9	17.8	9	70	14	110	31	3	20	45	1.67
65662511--65662739	16	14.1	16	67	18	102	32	2	19	45	1.64
65662563--65662601	19	2.1	19	85	9	53	30	0	17	51	1.46
65662583--65662688	25	4.2	24	74	10	79	30	1	21	46	1.62
65662556--65662672	25	4.6	25	75	12	94	29	0	22	47	1.57
65662676--65662719	19	2.3	19	92	0	70	36	0	18	45	1.49
65662792--65662837	13	3.8	13	78	21	64	36	0	21	41	1.54
65662785--65662846	22	2.8	22	92	2	97	37	0	17	45	1.49
65664352--65664393	19	2.2	19	100	0	84	9	21	9	59	1.57
65664358--65664399	19	2.2	19	91	0	66	14	21	7	57	1.61
65666224--65666347	7	17.0	7	68	17	65	33	44	0	21	1.58
65666225--65666319	15	6.4	15	81	11	99	31	45	1	22	1.59
65666224--65666327	22	4.7	21	75	14	102	32	45	0	21	1.58
65666250--65666344	29	3.2	29	86	3	109	31	45	1	22	1.59
65666224--65666344	22	5.5	22	75	8	86	32	45	0	21	1.58
65677665--65677689	13	1.9	13	100	0	50	24	0	12	64	1.27
65685492--65685549	29	2.0	30	86	3	82	32	3	8	55	1.47
65685497--65685557	30	2.0	31	83	3	79	32	4	6	55	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65686900--65686929	3	10.0	3	100	0	60	66	0	0	33	0.92
65688261--65688320	20	3.2	20	74	6	54	45	1	8	45	1.43
65688261--65688343	40	2.1	39	82	6	96	43	2	12	42	1.55
65690308--65690344	16	2.4	16	90	4	58	54	0	2	43	1.14
65690341--65690379	18	2.0	20	85	9	55	35	0	0	64	0.94
65691018--65691096	30	2.8	28	75	16	83	43	2	5	49	1.38
65707997--65708056	20	3.2	20	74	6	54	45	1	8	45	1.43
65707997--65708079	40	2.1	39	82	6	96	43	2	12	42	1.55
65710044--65710080	16	2.4	16	90	4	58	54	0	2	43	1.14
65710077--65710115	18	2.0	20	85	9	55	35	0	0	64	0.94
65710754--65710832	30	2.8	28	75	16	83	43	2	5	49	1.38
65730656--65730709	20	2.7	20	80	11	65	64	3	0	31	1.11
65730662--65730701	21	1.9	21	90	10	64	67	5	0	27	1.11
65730852--65730895	20	2.2	20	84	8	54	45	2	0	52	1.13
65731427--65731491	11	5.8	12	79	15	68	24	30	1	43	1.64
65732684--65732709	7	3.7	7	100	0	52	26	0	15	57	1.38
65733962--65734336	125	3.0	125	90	0	579	32	21	16	29	1.96
65736271--65736619	42	8.2	42	85	5	402	30	21	23	24	1.99
65736271--65736619	85	4.1	84	83	5	411	30	21	23	24	1.99
65736271--65736575	127	2.4	125	88	5	443	31	21	23	23	1.98
65737053--65737079	12	2.2	12	100	0	54	0	40	18	40	1.51
65738736--65738788	22	2.4	22	96	0	97	43	22	11	22	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65739557--65739711	9	17.8	9	68	14	92	32	3	20	43	1.69
65739550--65739797	16	15.1	16	66	19	86	32	2	19	44	1.65
65739603--65739777	19	9.3	19	70	20	52	32	1	21	45	1.59
65739622--65739727	25	4.2	24	72	10	70	31	1	21	45	1.63
65739850--65739895	13	3.8	13	78	21	64	36	0	21	41	1.54
65739843--65739904	22	2.8	22	92	2	97	37	0	17	45	1.49
65741031--65741068	16	2.4	16	91	4	60	44	21	7	26	1.79
65741380--65741421	19	2.2	19	100	0	84	9	21	9	59	1.57
65741386--65741427	19	2.2	19	91	0	66	14	21	7	57	1.61
65743251--65743374	7	17.0	7	68	17	65	33	44	0	21	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240