genome.fa.s24.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  117  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36376234--36376306	25	2.9	25	86	11	105	21	23	20	34	1.97
36376223--36376304	25	3.3	24	83	11	103	21	21	19	36	1.95
36376221--36376327	50	2.2	49	82	1	133	25	23	17	33	1.96
36382716--36382747	16	2.0	16	100	0	64	50	25	12	12	1.75
36392041--36392128	40	2.2	40	82	8	108	19	29	15	35	1.93
36392094--36392189	40	2.4	41	73	3	97	16	31	19	32	1.94
36413177--36413365	91	2.1	91	100	0	378	20	9	15	54	1.69
36414590--36414644	25	2.2	25	83	6	67	23	21	23	30	1.99
36418327--36418582	45	5.7	45	80	5	202	23	20	15	40	1.90
36420548--36420635	40	2.2	40	81	0	104	19	30	17	32	1.94
36430355--36430579	40	5.7	40	83	6	242	25	27	21	25	1.99
36430511--36430588	40	1.9	41	82	10	97	26	28	20	24	1.99
36437329--36437553	40	5.7	40	83	6	242	25	27	21	25	1.99
36437485--36437562	40	1.9	41	82	10	97	26	28	20	24	1.99
36444298--36444522	40	5.7	40	83	6	242	25	27	21	25	1.99
36444454--36444531	40	1.9	41	82	10	97	26	28	20	24	1.99
36451271--36451495	40	5.7	40	83	6	242	25	27	21	25	1.99
36451427--36451504	40	1.9	41	82	10	97	26	28	20	24	1.99
36454581--36454758	27	6.6	27	82	3	196	27	15	27	29	1.96
36454578--36454758	82	2.2	81	82	4	222	27	15	27	29	1.96
36462032--36462303	29	9.4	29	75	7	221	36	12	26	23	1.91
36464965--36464996	15	2.1	16	94	5	57	53	12	25	9	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36471600--36471939	102	3.4	102	83	2	382	30	14	25	30	1.95
36471596--36471933	51	6.7	50	78	5	293	30	14	25	29	1.95
36472147--36472198	21	2.4	22	80	3	61	48	1	23	26	1.62
36476141--36476181	12	3.4	12	81	18	50	7	7	0	85	0.75
36476116--36476184	27	2.7	26	78	14	79	8	10	0	81	0.89
36476126--36476162	18	2.1	17	95	5	65	10	8	0	81	0.89
36477617--36478115	24	21.7	22	72	16	347	41	18	13	26	1.87
36477618--36477857	46	5.2	46	91	1	374	40	18	14	26	1.88
36477726--36477973	116	2.1	116	92	0	406	41	18	14	25	1.88
36477629--36478019	162	2.4	162	88	5	553	41	18	13	26	1.88
36477842--36478115	46	6.0	46	93	0	476	42	18	13	25	1.87
36477617--36478113	92	5.4	92	84	7	436	41	18	13	25	1.87
36480382--36480645	40	6.7	40	88	6	317	25	22	27	25	2.00
36480382--36480645	80	3.3	80	85	5	349	25	22	27	25	2.00
36480383--36480678	80	3.7	77	82	9	296	26	21	27	24	2.00
36488372--36488635	40	6.7	40	88	6	317	24	21	27	25	2.00
36488373--36488668	80	3.7	77	82	9	296	25	21	27	25	1.99
36501216--36501335	62	1.9	62	96	0	222	36	12	11	39	1.80
36503752--36503806	24	2.3	24	83	0	74	29	23	9	38	1.85
36508013--36508044	15	2.2	15	94	5	57	31	6	9	53	1.58
36512409--36512450	14	3.0	14	86	6	50	71	0	14	14	1.15
36512405--36512450	22	2.1	22	88	8	67	69	0	15	15	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36513800--36514702	132	6.8	132	90	2	1375	28	19	23	28	1.98
36514697--36515186	100	4.9	100	90	1	714	29	20	24	26	1.99
36514727--36515190	50	9.3	50	70	3	306	29	20	23	25	1.99
36519524--36519565	18	2.2	20	79	12	52	69	0	4	26	1.08
36519524--36519565	8	4.9	8	86	13	57	69	0	4	26	1.08
36521591--36521640	21	2.3	22	80	13	59	64	6	0	30	1.18
36535348--36535435	23	3.8	23	78	4	79	42	18	10	29	1.83
36538681--36538736	25	2.2	27	78	12	64	42	19	5	32	1.74
36540365--36540401	9	4.1	9	89	0	56	48	10	10	29	1.72
36544805--36544849	19	2.4	19	85	14	74	57	15	0	26	1.38
36545853--36545911	21	2.8	22	87	7	86	27	30	13	28	1.94
36552000--36552067	29	2.3	29	85	5	93	27	30	13	27	1.94
36551889--36552216	174	1.9	174	98	0	638	31	25	14	29	1.95
36552176--36552247	29	2.5	29	81	0	90	30	30	12	26	1.93
36569109--36569168	29	2.1	29	80	0	66	53	5	16	25	1.63
36569274--36569303	14	2.1	15	93	6	53	26	6	30	36	1.82
36576272--36576340	25	2.7	26	76	14	72	31	20	28	18	1.96
36582539--36582655	57	2.1	57	81	3	137	41	35	0	21	1.59
36582643--36582684	7	5.9	7	83	5	57	42	33	0	23	1.55
36582650--36582692	22	2.0	22	90	0	68	44	32	0	23	1.54
36590839--36590880	20	2.0	23	86	13	63	69	0	16	14	1.20
36592188--36592333	37	3.9	37	96	0	247	26	30	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36592544--36592885	47	7.1	47	83	6	441	26	29	12	32	1.93
36592544--36592863	147	2.2	145	88	5	459	25	28	12	32	1.93
36592544--36592885	100	3.5	98	91	3	530	26	29	12	32	1.93
36594900--36595078	85	2.1	85	97	0	340	26	27	8	36	1.86
36595918--36595960	14	2.9	15	86	13	54	72	2	16	9	1.21
36595993--36596067	12	6.3	12	70	14	57	60	1	26	12	1.40
36595976--36596058	35	2.6	31	84	9	96	62	0	27	9	1.26
36605365--36605416	23	2.2	24	80	13	63	55	3	5	34	1.42
36606280--36606326	20	2.3	20	81	0	58	29	34	12	23	1.92
36608917--36609022	48	2.2	47	85	9	135	59	1	24	14	1.45
36619272--36620225	479	2.0	482	84	4	1257	20	20	16	43	1.88
36633985--36634169	79	2.3	81	81	9	220	27	28	21	23	1.99
36633985--36634169	40	4.7	40	84	6	209	27	28	21	23	1.99
36642212--36642396	79	2.3	82	84	7	238	25	27	22	24	2.00
36642193--36642396	40	5.1	40	82	8	238	25	27	22	25	2.00
36646469--36646512	20	2.2	20	91	0	70	34	20	29	15	1.94
36649058--36649172	3	38.3	3	71	13	67	31	7	3	57	1.44
36658913--36658973	29	2.1	29	87	6	88	26	18	21	34	1.96
36658975--36659080	29	3.8	28	76	9	83	24	12	23	39	1.89
36664281--36664425	71	2.1	70	89	1	218	50	13	11	25	1.74
36665447--36665505	6	9.7	6	90	3	73	81	15	0	3	0.82
36665459--36665505	6	7.8	6	95	0	76	80	19	0	0	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36672465--36672516	26	2.0	26	82	14	63	36	19	5	38	1.76
36672674--36672734	25	2.4	26	81	8	72	34	22	19	22	1.97
36672691--36672769	25	3.2	25	85	3	97	30	20	21	27	1.98
36672704--36672785	25	3.3	24	77	6	76	29	19	21	29	1.98
36677058--36677102	19	2.4	19	88	7	65	48	13	17	20	1.80
36677087--36677187	45	2.2	45	84	10	136	41	17	18	21	1.90
36678126--36678158	16	2.0	17	94	5	59	0	27	0	72	0.85
36678687--36678765	35	2.3	35	85	8	101	49	5	0	45	1.24
36680366--36680605	50	4.7	50	79	4	214	26	21	28	23	1.99
36687628--36688591	47	19.6	47	84	10	1214	32	8	29	29	1.86
36687628--36688591	96	9.8	94	86	9	1239	32	8	29	29	1.86
36687763--36687801	19	2.1	19	100	0	78	30	0	35	33	1.58
36687667--36687897	115	2.0	114	93	3	392	33	6	29	30	1.83
36687782--36688565	298	2.7	296	95	3	1374	32	8	29	29	1.87
36692899--36693084	50	3.8	49	81	3	178	26	23	27	22	1.99
36704676--36704820	41	3.5	41	94	1	238	28	19	29	22	1.98
36710454--36710536	29	2.8	29	79	3	94	43	26	10	19	1.84
36710718--36710868	54	2.8	53	81	3	196	27	20	18	33	1.96
36720795--36720926	30	4.4	30	80	7	144	20	26	12	40	1.87
36720761--36721000	89	2.7	90	83	7	299	22	21	13	42	1.88
36720824--36721077	60	4.2	58	76	11	174	23	23	11	41	1.87
36720853--36721077	30	7.5	30	79	8	206	24	23	11	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36728497--36728555	30	2.0	30	82	0	73	25	23	11	38	1.89
36728541--36728710	30	5.7	30	78	4	157	22	26	11	39	1.88
36728561--36728672	29	3.8	29	84	2	152	17	28	13	40	1.88
36728541--36728672	59	2.2	59	90	0	201	19	28	11	40	1.86
36728541--36728702	59	2.7	59	85	1	173	20	27	12	39	1.89
36728715--36728849	30	4.4	29	72	9	90	25	25	12	37	1.91
36732872--36732926	25	2.1	25	83	6	65	27	5	9	58	1.51
36733093--36733153	17	3.4	17	76	12	59	19	8	1	70	1.21
36738777--36738860	25	3.4	24	74	8	71	27	19	8	45	1.78
36741137--36741178	20	2.1	19	91	8	66	69	0	23	7	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240