genome.fa.s24.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  106  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32842074--32842585	227	2.2	228	87	3	717	29	15	21	33	1.94
32842774--32842858	29	2.9	29	81	11	102	38	18	2	40	1.64
32842811--32842867	29	2.0	29	85	0	78	38	19	3	38	1.69
32844154--32844225	29	2.6	29	82	12	105	31	25	4	38	1.75
32844154--32844255	29	3.6	27	78	11	98	34	24	3	37	1.74
32845757--32846098	76	4.5	74	87	5	490	28	16	18	36	1.93
32845757--32846098	151	2.3	149	89	2	515	28	16	18	36	1.93
32845974--32846216	122	2.0	121	89	2	371	29	14	16	39	1.88
32846095--32846584	76	6.4	76	82	3	524	27	15	18	38	1.91
32846092--32846544	153	3.0	150	82	4	518	27	15	19	37	1.92
32846742--32846870	31	4.4	29	82	4	143	34	24	0	39	1.61
32846742--32846870	30	4.4	30	81	6	140	34	24	0	39	1.61
32846757--32846870	61	1.9	59	87	3	165	35	22	0	41	1.60
32846741--32846870	59	2.2	59	83	5	165	34	24	0	40	1.61
32847368--32847430	8	8.2	8	75	15	53	74	0	23	1	0.90
32847356--32847429	15	5.3	14	71	16	55	72	0	25	1	0.92
32847368--32847434	23	3.1	22	76	22	70	76	0	22	1	0.87
32847374--32847442	19	3.4	19	77	14	75	78	0	20	1	0.83
32847376--32847443	22	2.9	23	78	8	66	79	0	19	1	0.81
32856574--32857941	75	18.2	76	85	4	1779	28	16	20	33	1.95
32856574--32857941	152	9.1	152	86	4	1770	28	16	20	33	1.95
32861508--32861564	22	2.4	25	80	16	68	21	26	14	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32866576--32866787	76	2.7	77	86	5	275	27	16	21	34	1.94
32866576--32866827	76	3.3	77	81	8	259	27	16	19	36	1.93
32866988--32867130	30	4.8	30	78	7	130	37	22	2	37	1.69
32866974--32867080	30	3.7	30	83	3	121	36	23	3	36	1.73
32867620--32867667	15	3.3	15	82	2	62	79	2	18	0	0.84
32867643--32867691	16	3.2	15	88	8	64	83	0	12	4	0.77
32867621--32867691	19	3.6	19	76	17	65	80	1	15	2	0.90
32871554--32871618	32	2.0	33	90	3	105	24	21	6	47	1.73
32887097--32887144	26	2.0	23	84	15	62	37	25	0	37	1.56
32895161--32895200	10	3.8	10	81	12	53	37	0	5	57	1.21
32906052--32906297	50	4.8	50	79	5	217	27	21	27	23	1.99
32906063--32906248	100	1.8	104	82	5	245	25	20	29	24	1.99
32911345--32911391	24	1.9	24	86	4	67	36	0	38	25	1.56
32911802--32911950	27	5.6	27	89	2	221	41	26	17	14	1.88
32911802--32911950	53	2.8	54	87	2	221	41	26	17	14	1.88
32911802--32911950	80	1.9	80	91	2	246	41	26	17	14	1.88
32918277--32918531	28	8.9	29	75	4	180	25	24	14	35	1.94
32918285--32918531	117	2.2	112	83	3	305	25	25	14	35	1.93
32923629--32923878	61	4.3	60	78	11	275	42	6	22	29	1.77
32923650--32923795	30	4.8	30	71	5	105	43	5	21	29	1.75
32923751--32923849	51	1.9	51	89	0	153	41	6	24	28	1.78
32926695--32926726	16	2.0	16	93	0	55	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32926852--32926876	11	2.3	11	100	0	50	72	0	0	28	0.86
32927898--32927946	20	2.4	21	80	10	57	40	2	4	53	1.32
32928046--32928091	10	4.7	10	83	2	58	34	0	0	65	0.93
32928046--32928086	20	2.0	20	90	9	66	31	0	0	68	0.90
32928055--32928098	20	2.2	20	83	0	52	34	0	2	63	1.07
32928102--32928131	13	2.3	13	100	0	60	13	0	0	86	0.57
32928444--32928482	16	2.4	16	86	4	51	56	0	5	38	1.22
32931384--32931422	19	2.0	20	90	5	62	53	2	0	43	1.14
32932686--32932718	3	11.0	3	100	0	66	33	0	0	66	0.92
32937723--32937852	43	3.0	44	76	14	137	32	28	16	23	1.96
32947792--32947829	20	1.9	20	94	0	67	34	0	7	57	1.28
32948267--32948309	22	1.9	23	90	4	70	25	0	0	74	0.82
32948267--32948310	10	3.7	13	77	20	51	27	0	0	72	0.85
32951923--32952032	33	3.3	33	74	12	100	25	11	44	18	1.83
32954052--32954236	99	1.9	99	87	2	273	57	15	2	24	1.49
32954761--32954786	12	2.2	12	100	0	52	15	23	19	42	1.89
32959066--32959104	14	2.8	14	88	0	60	35	10	23	30	1.88
32966240--32966278	3	13.0	3	88	0	60	30	2	2	64	1.21
32966404--32966447	17	2.6	17	85	3	63	40	11	0	47	1.39
32966610--32966666	30	1.9	30	89	7	89	35	3	3	57	1.33
32971867--32972148	44	6.4	44	77	5	248	26	17	25	30	1.97
32971860--32972148	88	3.3	90	80	5	320	27	16	25	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32971860--32972148	132	2.2	133	91	0	472	27	16	25	30	1.97
32972133--32972347	88	2.4	88	88	0	313	27	28	24	20	1.99
32972358--32972567	44	4.8	44	82	5	264	26	18	26	29	1.98
32973354--32973379	12	2.2	12	100	0	52	34	7	15	42	1.75
32973366--32973413	19	2.4	20	93	6	80	37	10	14	37	1.81
32973371--32973436	19	3.0	22	82	12	66	37	7	16	37	1.77
32973707--32973736	7	4.4	7	91	8	53	26	0	0	73	0.84
32973915--32973949	17	2.1	17	89	10	54	34	11	0	54	1.37
32974112--32974168	30	1.9	30	89	7	89	35	3	3	57	1.33
32975493--32975522	16	1.9	15	93	6	51	46	3	0	50	1.18
32976831--32976866	16	2.4	14	86	13	54	55	8	2	33	1.44
32979852--32979882	16	1.9	16	100	0	62	19	0	0	80	0.71
32984317--32984349	11	3.0	11	91	8	50	72	0	0	27	0.85
32987972--32988026	7	7.7	7	78	11	58	85	9	3	1	0.79
32987970--32988026	10	5.4	10	78	17	62	85	8	3	1	0.77
32987970--32988026	15	3.7	15	82	11	62	85	8	3	1	0.77
32987972--32988012	17	2.3	18	87	4	57	87	9	2	0	0.62
32989372--32989739	143	2.6	141	83	5	450	29	20	22	26	1.99
32989704--32990060	179	2.0	179	87	1	520	32	20	19	28	1.96
32991251--32991329	4	19.8	4	73	8	54	30	2	2	64	1.20
32993368--32993404	19	1.9	20	88	5	58	29	2	18	48	1.62
32995589--32995663	1	75.0	1	75	0	69	88	6	1	4	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32995589--32995649	11	5.4	11	86	7	77	90	4	0	4	0.56
32996067--32996091	11	2.3	11	100	0	50	92	8	0	0	0.40
32996959--32997472	143	3.6	142	83	2	618	29	19	23	28	1.98
32997401--32997968	44	12.7	44	70	7	304	30	21	20	27	1.98
32997432--32997968	179	3.0	179	91	1	853	31	21	20	27	1.98
32998245--32998290	23	2.0	23	87	8	67	50	32	4	13	1.61
32999949--33001175	612	2.0	609	95	1	2217	37	11	12	38	1.79
33001169--33001199	15	2.1	15	93	0	53	45	6	3	45	1.45
33001267--33001319	25	2.0	27	82	13	67	54	5	5	33	1.47
33004183--33004329	48	3.1	47	87	8	228	27	12	27	31	1.93
33004195--33004335	44	3.1	44	88	7	219	27	11	29	31	1.91
33007626--33007770	50	2.9	51	81	8	179	24	17	27	30	1.97
33007860--33007903	23	1.9	22	82	17	54	38	0	25	36	1.56
33009550--33009594	21	2.1	22	84	12	58	42	0	37	20	1.52
33009526--33009585	30	2.0	30	83	3	77	43	0	36	20	1.52
33015062--33015091	16	1.9	16	93	6	53	50	20	0	30	1.49
33015539--33015591	20	2.7	20	80	16	65	15	20	1	62	1.42
33016228--33016295	25	2.7	25	90	0	109	32	19	23	25	1.97
33018973--33019008	3	12.3	3	94	5	65	30	0	0	69	0.89
33024697--33024727	6	5.2	6	100	0	62	48	0	0	51	1.00
33024686--33024727	18	2.3	18	88	8	59	52	0	0	47	1.00
33035324--33035407	27	3.1	27	84	6	91	26	19	17	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33035358--33035476	27	4.4	26	84	4	139	21	15	15	46	1.84
33035359--33035477	54	2.2	55	83	10	156	21	15	15	47	1.83
33039212--33039241	15	1.9	16	93	6	53	56	0	0	43	0.99
33057493--33057717	40	5.7	40	87	5	287	25	27	22	24	2.00
33057493--33057717	119	1.9	120	84	6	305	25	27	22	24	2.00
33063711--33063762	23	2.2	23	86	6	68	63	0	28	7	1.22
33067440--33067473	17	2.0	17	88	0	50	32	2	0	64	1.08
33068563--33068649	6	14.5	6	90	0	138	28	67	1	2	1.10
33072556--33072604	23	2.2	23	82	7	66	40	2	4	53	1.32
33074554--33074716	23	7.1	23	81	0	173	25	20	23	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240