genome.fa.s24.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  141  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43989789--43990246	239	1.9	239	94	0	808	29	29	8	32	1.87
44000307--44000340	4	8.0	4	90	9	50	23	0	2	73	0.97
44000290--44000349	22	2.7	22	73	19	61	26	0	6	66	1.16
44002681--44002719	18	2.2	18	85	0	51	61	2	23	12	1.43
44004119--44004152	4	8.0	4	90	9	50	23	0	2	73	0.97
44004102--44004161	22	2.7	22	73	19	61	26	0	6	66	1.16
44006448--44006510	20	3.2	20	90	0	99	22	25	0	52	1.47
44006438--44006480	16	2.8	16	89	3	61	23	32	0	44	1.54
44013526--44013660	65	2.1	65	90	0	216	29	14	25	29	1.95
44014271--44014329	13	4.5	13	82	0	55	38	25	6	28	1.81
44016454--44016552	45	2.2	45	85	3	137	41	17	18	23	1.90
44018080--44018139	24	2.5	23	82	15	68	50	3	0	46	1.18
44019610--44019645	13	2.8	13	95	0	63	75	5	2	16	1.12
44019607--44019641	11	3.0	11	84	15	52	71	8	2	17	1.23
44019682--44019721	15	2.6	15	96	4	71	62	5	12	20	1.48
44023262--44023401	70	2.0	70	100	0	280	32	14	20	32	1.92
44027758--44027801	17	2.5	17	92	3	70	25	27	0	47	1.52
44028224--44028321	45	2.2	45	85	3	135	41	17	17	23	1.89
44028723--44028761	3	13.3	3	94	5	71	30	0	0	69	0.89
44029859--44029918	24	2.5	23	84	15	77	50	1	0	48	1.11
44031038--44031070	12	3.0	11	91	8	50	9	9	9	72	1.28
44042061--44042288	40	5.7	40	96	0	411	21	26	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44056392--44056655	40	6.7	40	85	6	286	26	28	20	25	1.99
44056392--44056602	79	2.7	80	85	2	275	26	28	20	24	1.99
44056394--44056655	119	2.2	119	81	5	298	25	27	20	25	1.99
44056359--44056655	79	3.7	80	79	10	263	25	27	20	25	1.99
44056587--44056664	40	1.9	41	82	10	97	26	28	20	24	1.99
44059709--44059749	12	3.4	12	86	6	57	7	43	21	26	1.79
44064210--44064240	16	1.9	16	93	0	53	32	16	6	45	1.72
44071636--44071682	20	2.5	19	86	10	62	72	2	21	4	1.12
44079133--44079166	16	2.1	17	88	5	52	35	20	5	38	1.77
44086159--44086196	19	2.0	19	85	10	51	63	2	21	13	1.42
44087504--44087555	14	3.9	13	76	20	54	50	15	7	26	1.71
44088183--44088254	27	2.7	27	84	0	99	38	29	18	13	1.89
44088319--44088362	13	3.4	12	79	14	52	22	11	15	50	1.76
44101192--44101416	60	3.8	60	86	1	301	27	26	11	34	1.91
44101216--44101325	31	3.6	31	65	9	82	27	28	10	33	1.90
44109956--44110004	25	2.1	23	85	11	64	22	14	26	36	1.92
44109854--44110188	166	2.0	166	98	0	652	29	17	20	33	1.95
44110123--44110170	25	2.0	23	84	11	62	22	14	27	35	1.93
44110166--44110213	25	1.9	25	86	0	69	31	16	20	31	1.95
44116432--44116537	40	2.7	40	96	0	203	38	19	24	16	1.92
44129546--44129597	23	2.3	22	75	21	54	9	23	1	65	1.32
44129591--44129629	18	2.2	18	85	0	51	12	23	2	61	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44134075--44134105	16	2.0	15	93	6	53	51	0	19	29	1.47
44135059--44135107	25	2.0	25	95	0	89	30	22	20	26	1.98
44138226--44138250	6	4.2	6	100	0	50	0	32	0	68	0.90
44138306--44138334	13	2.1	14	93	6	51	41	24	13	20	1.89
44153446--44153489	22	1.9	22	86	9	61	38	15	2	43	1.60
44171090--44171154	34	1.9	34	93	0	112	24	0	30	44	1.54
44175828--44176136	170	1.8	170	85	2	431	28	17	26	27	1.97
44181042--44181311	33	8.2	32	75	15	214	44	19	6	29	1.75
44181100--44181208	14	6.8	17	66	20	74	43	21	8	27	1.81
44181032--44181307	35	8.4	34	71	16	152	44	18	6	29	1.75
44181061--44181353	64	4.5	66	85	5	368	45	18	7	29	1.77
44181096--44181338	31	7.6	29	72	18	107	44	18	8	27	1.78
44181697--44181950	78	3.3	78	90	2	370	39	17	3	38	1.69
44186109--44186279	94	1.8	94	84	0	234	33	21	17	27	1.96
44196660--44197024	179	2.0	179	95	0	658	33	15	20	30	1.94
44200542--44200575	16	2.2	15	89	5	50	44	0	0	55	0.99
44201190--44201249	25	2.4	25	83	10	70	38	3	0	58	1.15
44201190--44201249	8	7.2	8	76	14	50	38	3	0	58	1.15
44207074--44207107	16	2.1	16	88	5	50	8	0	14	76	1.01
44225784--44226051	40	6.7	40	94	0	464	30	20	26	22	1.98
44230651--44230792	37	3.8	37	77	9	128	34	16	14	33	1.90
44248677--44248819	44	3.3	43	66	10	110	24	24	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44248412--44248906	87	5.7	87	86	4	568	22	25	26	26	2.00
44264581--44264686	42	2.5	42	87	0	158	50	14	12	23	1.76
44264587--44264655	22	3.2	22	79	8	88	49	10	14	26	1.75
44264599--44264665	20	3.2	21	81	8	82	49	13	13	23	1.77
44269318--44269372	17	3.4	16	76	11	51	18	7	1	72	1.16
44274324--44274571	85	2.9	86	90	3	376	35	23	19	21	1.96
44274324--44274571	43	5.8	43	90	1	383	35	23	19	21	1.96
44274977--44275022	21	2.2	21	92	7	76	0	47	19	32	1.50
44280437--44280521	9	9.9	9	80	8	79	29	2	23	44	1.66
44280446--44280525	34	2.4	34	91	0	133	28	3	22	45	1.70
44280623--44281026	9	47.9	9	67	17	120	30	4	19	45	1.70
44280622--44280893	34	8.2	33	74	10	144	30	4	19	45	1.71
44280690--44280757	35	1.9	36	93	3	120	32	4	16	47	1.66
44280646--44280976	167	2.0	169	95	2	596	30	5	18	45	1.71
44280854--44280926	37	2.0	37	100	0	146	30	2	16	50	1.59
44280959--44281026	25	2.7	25	83	0	82	30	1	23	44	1.63
44280955--44281026	16	4.4	16	70	19	58	30	1	23	44	1.62
44281023--44281796	212	3.7	212	96	1	1394	42	9	9	38	1.70
44286696--44286836	37	3.8	37	77	10	128	34	17	14	33	1.90
44304038--44304154	45	2.6	45	83	1	155	27	20	19	32	1.97
44304172--44304283	44	2.6	43	78	4	116	28	21	20	29	1.98
44304719--44304862	44	3.3	44	66	11	114	24	24	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44304939--44305259	44	7.3	44	71	11	219	24	23	25	26	2.00
44304376--44305270	88	10.2	88	86	2	992	23	24	24	27	2.00
44312345--44312382	13	3.1	12	85	14	51	73	7	2	15	1.17
44312406--44312475	30	2.3	31	82	7	81	67	5	12	14	1.40
44312674--44312732	29	2.1	27	84	6	73	57	5	5	32	1.42
44318024--44318052	15	1.9	15	100	0	58	75	0	0	24	0.80
44322223--44322317	39	2.5	37	96	0	127	44	16	3	35	1.64
44322247--44322311	22	3.2	22	68	20	68	47	16	4	30	1.67
44322253--44322314	19	3.2	19	68	20	56	43	16	4	35	1.69
44322233--44322295	20	3.2	20	70	20	69	47	12	1	38	1.51
44322353--44322386	9	3.8	9	88	0	50	11	38	11	38	1.79
44324845--44324964	42	2.9	42	87	5	197	41	3	5	50	1.41
44325814--44325858	8	6.1	8	75	19	53	64	11	0	24	1.26
44329072--44329128	30	1.9	29	85	3	78	21	22	22	33	1.97
44330348--44330374	2	13.5	2	100	0	54	0	51	0	48	1.00
44340630--44340701	27	2.8	25	71	8	63	41	9	15	33	1.80
44343397--44343464	29	2.3	29	85	5	93	27	30	13	27	1.94
44343286--44343613	174	1.9	174	94	0	584	31	24	14	29	1.95
44343566--44343644	29	2.7	30	82	13	110	30	30	13	25	1.94
44345978--44346021	21	2.1	21	100	0	88	34	38	4	22	1.75
44351990--44352035	23	2.0	23	100	0	92	52	8	17	21	1.71
44356364--44356390	9	3.0	9	100	0	54	33	11	0	55	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44361685--44361738	28	2.0	27	81	3	63	22	16	9	51	1.72
44369867--44369909	3	14.3	3	100	0	86	67	0	0	32	0.91
44374291--44374538	38	6.6	38	84	0	309	14	22	29	33	1.93
44374518--44374576	25	2.4	25	88	0	91	13	18	30	37	1.90
44376316--44376385	30	2.3	30	90	0	104	22	31	28	17	1.96
44382612--44382656	19	2.3	20	80	7	56	44	11	33	11	1.75
44382625--44382661	19	1.9	19	100	0	74	43	10	35	10	1.75
44382906--44383090	79	2.3	81	83	9	229	24	22	27	25	2.00
44382907--44383090	40	4.6	39	81	11	189	25	22	27	25	2.00
44382907--44383113	79	2.6	79	81	9	192	26	22	27	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240