genome.fa.s24.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  165  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51570000--51570030	10	3.1	10	95	0	53	67	0	0	32	0.91
51569994--51570043	18	2.7	18	76	14	57	64	0	4	32	1.12
51571219--51571325	37	2.8	40	80	11	141	26	13	14	46	1.80
51571219--51571598	77	4.9	77	83	2	372	24	16	15	43	1.86
51571345--51571621	40	7.2	38	71	9	168	24	18	14	42	1.87
51571219--51571618	154	2.6	154	84	2	500	24	16	15	44	1.86
51575011--51575037	12	2.2	12	100	0	54	18	7	7	66	1.40
51575464--51575499	18	2.0	18	100	0	72	27	5	11	55	1.57
51576325--51576358	17	2.1	17	88	5	52	50	0	17	32	1.47
51576763--51576858	42	2.3	42	94	0	165	35	9	27	28	1.88
51585125--51585159	17	2.0	18	88	5	54	60	11	8	20	1.57
51591332--51591471	60	2.3	60	95	0	244	32	25	15	27	1.95
51593821--51593869	15	3.1	16	77	14	57	63	2	8	26	1.34
51594550--51594597	25	1.9	25	86	0	69	50	2	8	39	1.44
51594626--51594757	65	2.0	67	82	2	160	48	5	9	36	1.59
51596188--51596411	104	2.2	104	93	1	378	31	31	19	17	1.95
51596740--51596803	30	2.2	29	81	10	76	29	28	6	35	1.82
51596747--51596803	30	1.9	30	85	3	80	29	24	7	38	1.82
51603634--51603784	71	2.1	72	91	2	243	30	29	16	23	1.96
51603704--51603925	104	2.2	103	92	3	367	31	31	18	18	1.95
51604252--51604315	30	2.2	29	81	10	76	29	28	6	35	1.82
51604259--51604315	30	1.9	30	85	3	80	29	24	7	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51605745--51605792	14	3.2	14	72	16	51	56	8	12	22	1.63
51605729--51605792	31	2.1	31	100	0	128	56	6	12	25	1.59
51605729--51605781	17	3.3	17	74	15	67	56	5	11	26	1.56
51608788--51608866	40	2.0	39	83	9	99	34	1	1	63	1.11
51609167--51609224	9	6.4	9	85	0	80	43	22	8	25	1.82
51609167--51609216	18	2.8	18	93	0	91	42	22	10	26	1.84
51617531--51617580	25	2.1	24	81	7	57	28	18	30	24	1.97
51620626--51620771	75	1.9	75	88	2	222	54	12	6	27	1.61
51620946--51621063	33	3.6	33	79	2	130	25	9	46	18	1.79
51620946--51621073	65	2.0	66	84	4	170	24	9	46	19	1.79
51623019--51623242	103	2.2	103	84	5	267	56	15	0	27	1.43
51623154--51623327	80	2.1	82	88	2	253	55	16	0	27	1.45
51623053--51623404	183	1.9	183	83	6	453	55	15	0	28	1.43
51623489--51623555	27	2.5	28	81	11	70	1	26	0	71	0.94
51623829--51623884	25	2.3	25	87	3	78	60	1	0	37	1.07
51624790--51624830	9	4.6	9	90	0	64	60	12	26	0	1.31
51624818--51624870	18	2.9	18	80	5	63	60	11	18	9	1.57
51624856--51625119	105	2.5	105	91	0	420	46	14	26	12	1.80
51625018--51625059	21	2.0	21	95	0	75	52	16	21	9	1.72
51625145--51625180	18	2.0	18	88	0	54	16	22	38	22	1.93
51625283--51625322	15	2.6	16	84	7	57	72	0	27	0	0.85
51630152--51630207	6	9.3	6	100	0	112	50	0	16	33	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51638421--51638445	13	1.9	13	100	0	50	44	24	8	24	1.80
51639149--51639217	21	3.0	22	75	21	77	36	18	21	23	1.95
51643975--51644873	447	2.0	447	98	0	1753	30	12	25	31	1.92
51646543--51646610	26	2.6	26	92	0	118	23	30	23	22	1.99
51653662--51653715	29	1.9	27	85	7	72	24	12	20	42	1.87
51653661--51653721	29	2.2	27	79	5	68	22	11	18	47	1.80
51654578--51654637	29	2.2	26	82	8	66	46	13	13	26	1.80
51660334--51660599	103	2.6	104	91	0	426	19	20	30	29	1.97
51662901--51662955	12	4.6	12	88	0	74	78	3	1	16	0.98
51662901--51662955	24	2.3	24	90	6	85	78	3	1	16	0.98
51663001--51663068	31	2.2	30	89	5	109	75	2	11	10	1.16
51663921--51663959	15	2.4	15	87	12	51	66	2	20	10	1.33
51676906--51677238	97	3.4	97	99	0	648	41	13	6	38	1.71
51677276--51677320	23	2.0	23	82	8	56	44	6	2	46	1.42
51677327--51677353	11	2.5	11	100	0	54	48	25	0	25	1.52
51680403--51680611	92	2.3	91	85	5	269	45	3	4	46	1.41
51680539--51680586	26	1.9	25	84	16	64	45	0	2	52	1.12
51680665--51680875	66	3.4	63	69	21	192	41	3	6	48	1.44
51680627--51680919	120	2.4	120	93	3	493	43	2	4	49	1.38
51680752--51680803	15	3.6	15	80	12	56	44	0	1	53	1.11
51680881--51680922	15	2.7	16	82	14	52	45	0	2	52	1.13
51680872--51680913	15	2.9	15	82	10	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51680856--51681165	150	2.0	155	90	4	495	47	5	4	43	1.46
51681289--51681324	16	2.2	16	95	0	63	38	33	0	27	1.57
51681906--51681947	18	2.3	19	80	12	52	57	7	0	35	1.26
51684297--51684332	16	2.2	17	90	5	56	19	0	0	80	0.71
51685665--51685689	12	2.1	12	100	0	50	52	8	0	40	1.31
51686030--51686209	25	7.6	25	68	11	110	41	13	14	30	1.85
51686007--51686219	47	4.6	47	92	1	331	41	14	13	30	1.84
51686201--51686239	20	2.0	20	94	0	69	41	17	10	30	1.83
51686153--51686286	67	2.0	67	95	0	241	40	14	12	32	1.84
51686106--51686332	114	2.0	113	92	2	375	40	14	12	31	1.84
51686059--51686375	161	2.0	160	92	0	526	40	15	12	31	1.85
51686220--51686375	47	3.3	47	91	1	251	39	16	12	32	1.85
51688505--51688690	80	2.3	82	81	5	209	25	26	21	25	1.99
51688505--51688635	40	3.3	40	90	0	190	25	27	22	25	2.00
51690380--51690503	43	2.9	43	80	11	128	32	30	18	18	1.95
51694658--51694694	19	2.0	19	89	5	58	48	8	0	43	1.32
51697833--51697908	38	2.0	38	94	0	134	25	19	11	43	1.85
51701962--51702019	24	2.6	22	83	8	64	43	0	0	56	0.99
51701983--51702032	21	2.2	24	86	13	70	42	0	0	58	0.98
51704374--51704419	25	1.9	24	82	8	58	54	0	17	28	1.43
51704953--51704982	13	2.3	13	94	0	51	86	0	3	10	0.67
51705553--51706292	50	14.8	50	69	2	277	23	21	24	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51705575--51706292	100	7.2	100	90	0	1087	23	22	24	29	1.99
51706280--51706536	46	5.8	46	69	12	160	29	19	18	32	1.96
51706279--51706662	175	2.2	175	94	0	669	29	19	18	32	1.96
51706331--51706610	85	3.2	85	71	6	283	29	19	17	33	1.95
51707931--51707959	15	1.9	15	100	0	58	13	13	3	68	1.33
51707930--51707959	7	4.1	7	91	8	51	13	13	3	70	1.30
51708856--51708899	6	6.8	6	87	12	61	18	0	13	68	1.22
51713861--51713897	18	2.1	18	90	10	58	62	5	0	32	1.18
51714694--51714726	6	5.5	6	100	0	66	84	0	0	15	0.61
51715104--51715142	18	2.1	19	85	4	53	71	2	12	12	1.24
51717165--51717218	28	2.0	27	85	3	72	5	29	0	64	1.16
51719554--51719605	26	2.0	27	92	3	88	44	0	5	50	1.26
51720435--51720477	22	2.0	22	90	0	68	41	25	23	9	1.84
51721726--51721768	21	2.1	20	82	4	50	37	2	6	53	1.41
51738849--51738896	19	2.6	19	81	18	57	6	18	4	70	1.25
51739412--51739630	54	4.1	55	77	8	184	22	24	26	27	2.00
51740181--51740238	28	2.1	28	86	0	80	18	18	18	43	1.89
51744005--51744047	18	2.4	18	92	3	70	18	32	37	11	1.87
51749210--51749323	3	38.0	3	96	0	210	68	0	31	0	0.90
51749574--51749850	129	2.1	130	83	2	342	38	13	18	29	1.90
51752277--51752301	13	1.9	13	100	0	50	68	16	0	16	1.22
51752963--51753160	41	4.8	41	82	6	161	25	25	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51758377--51758516	28	5.0	28	82	5	165	52	9	15	22	1.71
51758377--51758516	56	2.5	57	84	1	183	52	9	15	22	1.71
51762135--51762271	40	3.4	39	78	4	132	18	23	21	36	1.95
51762160--51762265	40	2.7	40	83	4	135	16	27	25	31	1.96
51765907--51765938	13	2.3	15	89	10	50	53	3	43	0	1.16
51774192--51774275	20	4.2	21	74	19	81	29	17	15	36	1.91
51783876--51783917	21	2.0	22	86	13	61	42	0	33	23	1.55
51783853--51783911	29	2.0	29	83	6	75	44	0	35	20	1.52
51790904--51790965	20	3.0	21	77	13	58	45	6	14	33	1.71
51791005--51791065	20	3.0	20	78	4	70	36	1	13	49	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240