genome.fa.s24.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  156  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49293155--49293191	16	2.3	16	90	9	58	59	0	2	37	1.12
49293154--49293197	17	2.6	17	80	20	56	56	0	4	38	1.20
49293904--49293975	10	7.2	10	74	12	58	23	1	8	66	1.27
49293902--49293975	30	2.5	30	76	12	80	24	1	9	64	1.31
49296459--49296629	27	6.3	26	81	6	144	24	14	18	42	1.88
49296459--49296601	54	2.6	53	82	4	160	25	16	18	39	1.91
49301535--49301610	3	25.3	3	97	0	143	68	0	31	0	0.90
49307462--49307498	15	2.5	15	87	12	51	67	8	0	24	1.17
49307697--49307750	23	2.3	22	81	15	63	77	3	1	16	1.00
49308019--49308103	42	2.0	42	95	0	152	36	29	16	17	1.92
49309407--49309825	88	4.8	87	81	4	412	31	27	15	26	1.96
49309525--49309825	132	2.3	131	92	2	487	30	27	14	26	1.95
49309396--49309800	220	1.8	220	89	1	632	29	27	14	27	1.95
49310463--49310563	45	2.2	45	74	10	107	51	8	13	25	1.70
49322034--49322080	7	7.0	7	80	9	53	80	0	0	19	0.70
49322034--49322080	13	3.5	13	82	11	60	80	0	0	19	0.70
49322034--49322080	20	2.3	20	92	0	85	80	0	0	19	0.70
49322435--49322526	36	2.6	36	98	0	175	22	25	27	25	2.00
49329975--49330466	165	3.0	165	94	0	867	34	6	23	35	1.81
49332827--49333026	105	1.9	104	83	5	260	26	21	29	23	1.99
49338732--49338769	17	2.2	18	95	4	69	15	5	2	76	1.08
49340880--49340964	21	4.2	20	75	14	68	28	4	2	64	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49348000--49348032	16	2.1	16	94	0	57	24	9	36	30	1.86
49348651--49348735	40	2.1	40	84	0	107	40	7	18	34	1.78
49349749--49349827	38	2.1	38	100	0	158	32	35	10	21	1.87
49350823--49350910	43	2.1	42	86	2	122	30	15	9	44	1.78
49357623--49357679	30	1.9	29	85	3	78	36	14	8	40	1.76
49365989--49366256	104	2.6	105	93	1	450	18	20	30	29	1.97
49368388--49368436	21	2.3	21	96	0	89	20	16	46	16	1.83
49374185--49374273	3	28.7	3	70	18	58	61	3	4	30	1.32
49374891--49374933	6	6.8	6	89	7	59	76	2	2	18	1.00
49374891--49374933	19	2.3	19	88	8	61	76	2	2	18	1.00
49388095--49388314	25	9.3	25	82	10	214	20	25	17	36	1.94
49388197--49388235	19	2.1	19	90	0	60	20	30	15	33	1.94
49388229--49388314	22	3.8	22	81	4	91	18	25	19	36	1.95
49388095--49388314	69	3.1	69	72	12	187	20	25	17	36	1.94
49389193--49389244	22	2.4	22	83	0	68	50	19	13	17	1.78
49389236--49389406	32	5.4	32	81	4	186	37	22	21	18	1.94
49389552--49389624	24	3.1	23	78	5	83	47	23	8	20	1.76
49389655--49390040	27	14.4	27	88	1	499	23	24	20	31	1.98
49396572--49396602	16	1.9	16	93	0	53	41	3	0	54	1.16
49400735--49400807	36	2.0	36	94	0	128	34	13	13	38	1.85
49412721--49412784	26	2.5	26	84	5	85	31	17	9	42	1.81
49419610--49419671	30	2.2	30	85	8	85	30	6	8	54	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49420087--49420152	24	2.7	24	77	13	71	60	13	1	24	1.42
49424139--49424195	27	2.2	26	90	6	89	56	3	3	36	1.34
49428471--49428513	9	4.6	9	80	8	50	65	0	0	34	0.93
49428500--49428579	9	8.7	9	75	13	65	62	2	1	33	1.16
49428483--49428590	45	2.3	47	79	7	114	63	2	0	32	1.15
49428500--49428580	37	2.2	37	82	12	96	62	2	1	33	1.16
49429015--49429064	23	2.2	23	85	0	64	32	2	6	60	1.32
49429119--49429171	20	2.9	17	76	17	52	32	3	5	58	1.39
49429185--49429226	17	2.4	18	84	11	61	38	0	2	59	1.10
49429296--49429407	28	4.2	27	72	18	74	34	0	0	64	1.00
49429308--49429446	9	15.4	10	71	16	92	30	0	0	67	1.01
49429328--49429448	17	6.9	17	71	13	75	30	0	0	67	1.02
49429336--49429398	15	3.8	15	76	16	54	34	0	0	65	0.93
49429296--49429448	51	3.2	47	81	16	156	32	0	1	65	1.06
49429974--49430002	15	1.9	15	100	0	58	13	10	6	68	1.37
49431645--49431669	12	2.1	12	100	0	50	52	0	0	48	1.00
49447050--49447140	17	5.4	17	66	23	57	40	3	3	52	1.34
49454978--49455012	17	2.1	17	88	0	52	40	20	5	34	1.76
49458279--49458339	32	2.0	31	90	6	97	39	18	8	34	1.80
49459380--49459561	75	2.5	73	84	6	221	46	12	1	39	1.49
49459920--49460182	67	3.9	65	85	6	330	42	14	3	39	1.61
49459920--49460187	134	2.0	134	85	5	364	42	14	3	39	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49459352--49460703	642	2.1	626	85	5	1766	39	15	9	35	1.80
49460560--49460703	67	2.1	67	91	2	227	40	16	4	38	1.68
49466948--49467079	67	2.0	67	87	0	192	40	15	5	39	1.70
49467607--49467658	7	7.4	7	93	0	86	42	1	0	55	1.10
49479774--49479826	1	53.0	1	76	0	52	88	1	9	0	0.58
49479774--49479826	17	3.1	17	91	5	81	88	1	9	0	0.58
49479783--49479826	23	1.9	23	90	9	72	88	0	11	0	0.51
49479774--49479828	11	4.8	11	82	8	65	87	1	10	0	0.63
49480090--49480310	108	2.1	107	85	2	291	24	17	8	49	1.73
49480784--49480841	24	2.4	24	91	0	89	34	6	25	32	1.83
49481305--49481731	44	9.8	44	67	13	202	29	21	25	24	1.99
49481174--49481642	131	3.6	131	90	0	706	29	21	24	24	1.99
49481558--49481729	87	2.0	87	97	0	326	28	23	25	22	1.99
49481427--49481939	218	2.3	219	84	2	638	28	21	25	24	1.99
49481172--49481746	44	13.2	43	65	10	200	29	21	24	24	1.99
49481961--49482336	44	8.8	44	70	10	260	31	22	20	26	1.98
49481966--49482246	85	3.3	85	83	6	372	31	21	20	26	1.98
49481960--49482334	85	4.4	84	79	7	328	31	21	20	25	1.98
49482088--49482336	129	2.0	126	88	4	374	30	22	20	26	1.98
49483965--49484000	3	12.3	3	94	5	65	33	0	0	66	0.92
49495655--49495845	97	2.0	97	89	2	294	27	17	7	47	1.75
49496146--49496186	16	2.7	15	85	7	64	43	21	2	31	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49496311--49497060	44	17.2	44	64	11	216	29	19	24	26	1.98
49496305--49497144	131	6.4	131	89	1	1211	29	19	24	26	1.98
49498964--49499003	12	3.3	12	78	0	53	20	2	15	62	1.43
49499243--49499442	107	1.9	107	92	0	337	29	20	20	31	1.97
49504560--49504635	31	2.5	31	91	0	125	42	23	6	27	1.79
49504616--49504660	20	2.2	20	88	0	63	44	31	4	20	1.71
49504837--49504989	74	2.1	74	92	0	252	18	27	9	43	1.82
49505646--49505715	31	2.3	30	80	9	79	27	7	21	44	1.78
49505821--49505895	31	2.4	32	78	10	84	26	8	20	45	1.78
49509735--49509786	24	2.2	24	89	0	77	9	21	44	25	1.82
49512897--49512956	29	2.1	29	83	0	75	35	25	23	16	1.95
49519015--49519362	116	2.9	119	87	4	508	34	28	10	26	1.90
49519898--49519937	21	1.9	21	100	0	80	17	20	7	55	1.66
49520821--49520858	18	2.1	19	85	5	51	36	0	10	52	1.36
49521304--49521486	11	17.9	11	73	18	123	59	0	2	38	1.12
49521338--49521394	28	2.0	29	86	3	80	57	0	1	40	1.09
49521304--49521405	50	2.0	53	94	5	183	57	0	1	40	1.10
49521341--49521500	39	4.1	39	89	5	241	61	0	2	35	1.09
49524590--49524620	16	1.9	16	93	0	53	45	0	0	54	0.99
49527056--49527110	27	2.0	27	82	6	67	43	3	5	47	1.44
49548914--49548960	6	7.7	6	88	9	69	82	2	2	12	0.84
49549392--49549441	26	1.9	26	95	0	91	36	18	4	42	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49550400--49550465	32	2.1	32	94	0	114	56	12	4	27	1.55
49552879--49552953	35	2.1	35	95	0	132	44	10	13	32	1.78
49553569--49553618	19	2.6	19	78	9	57	54	16	4	26	1.59
49555674--49555736	30	2.1	30	90	0	99	36	42	0	20	1.52
49558029--49558060	16	2.0	16	93	0	55	25	15	0	59	1.36
49558049--49558121	38	1.9	37	86	8	103	31	21	1	45	1.61
49558251--49558303	23	2.3	23	90	0	88	33	26	16	22	1.96
49558749--49558807	30	2.0	30	86	0	82	28	25	5	40	1.77
49564155--49564189	16	2.2	16	94	0	61	45	22	5	25	1.74
49568430--49568464	12	2.9	12	86	0	52	34	42	8	14	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240