genome.fa.s24.2.7.7.80.10.50.1000.197.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  197  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59864202--59864286	27	3.0	28	75	16	86	58	4	0	36	1.19
59868287--59868586	29	11.2	29	78	15	292	32	1	24	42	1.61
59868323--59868568	52	4.6	52	77	8	253	30	1	24	43	1.62
59868286--59868586	132	2.3	133	91	2	473	32	0	23	42	1.61
59868249--59868539	23	11.7	23	75	18	228	31	1	24	43	1.61
59868383--59868595	104	2.1	103	82	4	250	32	1	22	43	1.62
59870899--59870963	30	2.2	30	91	0	103	66	0	1	32	1.01
59870997--59871047	22	2.3	21	83	9	66	35	0	31	33	1.58
59871000--59871098	52	1.9	52	93	0	171	38	0	31	30	1.58
59871052--59871098	22	2.1	22	96	0	85	40	0	34	25	1.56
59876701--59876762	31	2.0	31	96	0	115	30	9	16	43	1.80
59886187--59886360	92	1.9	88	81	6	206	35	20	8	36	1.82
59890263--59890298	17	2.1	18	89	5	56	69	5	0	25	1.10
59890322--59890389	32	2.1	33	83	2	84	63	2	1	32	1.18
59890839--59890872	11	3.2	11	83	8	52	23	11	32	32	1.91
59890928--59890952	13	1.9	13	100	0	50	24	4	0	72	1.02
59890914--59890970	19	2.9	18	75	15	51	35	1	0	63	1.05
59893265--59893414	41	3.7	41	88	3	221	24	29	20	26	1.99
59893263--59893439	82	2.2	83	83	11	222	25	28	19	27	1.99
59895464--59895488	13	1.9	13	100	0	50	68	24	0	8	1.16
59895630--59895766	40	3.4	40	73	4	125	40	20	18	20	1.92
59895804--59896127	41	7.9	41	89	1	461	23	20	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59896592--59896741	74	2.0	74	85	10	200	30	1	24	44	1.62
59896800--59896851	21	2.5	21	78	6	52	25	1	36	36	1.67
59899795--59899975	86	2.1	86	98	1	355	40	4	7	47	1.52
59900042--59900261	51	4.1	51	86	13	325	45	17	7	29	1.75
59900132--59900159	12	2.3	12	100	0	56	57	21	0	21	1.41
59900081--59900210	63	2.1	63	100	0	260	47	18	6	27	1.72
59900042--59900321	114	2.5	114	98	1	537	46	18	7	27	1.75
59900195--59900321	63	2.0	63	96	3	238	48	19	6	25	1.73
59900246--59900273	12	2.3	12	100	0	56	57	21	0	21	1.41
59900218--59900321	33	3.2	33	64	20	85	47	19	7	25	1.76
59900267--59900377	33	3.4	34	82	10	115	43	17	8	31	1.78
59903402--59904386	120	8.2	120	98	0	1794	43	2	5	47	1.41
59903973--59904007	18	2.0	17	88	5	52	45	0	0	54	0.99
59904215--59904249	18	2.0	17	88	5	52	45	0	0	54	0.99
59904335--59904369	18	2.0	17	88	5	52	45	0	0	54	0.99
59904534--59904624	45	2.0	45	85	2	121	37	28	6	27	1.82
59904605--59904673	16	4.2	16	92	3	120	36	37	1	24	1.65
59904605--59904673	33	2.1	32	94	2	120	36	37	1	24	1.65
59904788--59905135	50	7.0	50	96	0	617	53	0	5	41	1.25
59904818--59905068	15	19.6	14	64	32	77	52	0	7	39	1.29
59905071--59905120	15	3.5	14	74	20	50	54	0	4	42	1.19
59909423--59909537	43	2.7	43	84	2	142	28	16	23	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59909423--59909579	43	3.7	43	83	3	118	30	16	22	30	1.96
59909362--59909554	86	2.3	85	75	5	194	29	12	24	33	1.92
59912980--59913147	46	3.7	46	94	2	288	28	22	15	33	1.95
59914066--59914182	47	2.4	47	83	5	128	29	13	25	31	1.94
59918151--59918301	46	3.3	46	99	0	293	36	11	22	29	1.90
59918243--59918367	66	1.9	66	91	0	205	39	12	20	28	1.88
59918302--59918505	46	4.5	46	93	1	333	34	14	22	28	1.93
59918197--59918413	112	1.9	112	91	0	353	37	12	21	28	1.90
59918148--59918459	158	2.0	158	92	0	525	36	12	21	29	1.91
59922581--59922748	21	8.0	21	71	9	101	19	20	16	43	1.88
59922613--59922748	42	3.2	41	83	5	164	17	21	16	44	1.87
59930537--59930565	12	2.5	12	94	5	51	48	6	31	13	1.69
59936654--59936711	20	2.8	21	80	15	66	37	0	6	55	1.27
59936651--59936713	21	3.0	20	79	6	72	36	0	6	57	1.24
59941489--59941647	82	1.9	82	92	2	266	28	18	13	38	1.89
59945021--59945089	28	2.5	28	78	0	66	36	1	2	59	1.21
59951996--59952055	17	3.8	16	76	14	54	40	1	1	56	1.19
59951982--59952057	11	6.8	11	72	21	52	42	1	1	55	1.16
59952245--59952292	26	2.0	22	84	15	60	41	6	12	39	1.68
59956212--59956280	21	3.4	21	65	15	63	46	10	7	36	1.65
59956216--59956284	23	3.3	23	61	23	60	44	8	7	39	1.63
59956219--59956311	40	2.3	40	100	0	186	44	9	8	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59956229--59956293	21	3.2	21	62	16	55	40	10	10	38	1.75
59959538--59959577	14	2.9	14	84	0	53	42	20	7	30	1.79
59959503--59959569	34	1.9	35	84	3	91	44	14	10	29	1.79
59962399--59962474	37	2.1	37	94	0	134	30	11	6	51	1.64
59982139--59982275	73	1.9	73	84	0	184	25	26	24	23	2.00
59982833--59982931	52	1.9	52	95	0	180	45	10	18	26	1.80
59985556--59985619	24	2.7	24	85	0	74	37	3	39	20	1.68
59987751--59987796	19	2.4	18	82	10	56	13	6	2	78	1.04
59989007--59989278	131	2.1	131	94	0	472	38	14	13	33	1.86
59992416--59992469	27	2.0	27	100	0	108	29	29	3	37	1.75
59992741--59992771	8	4.0	8	95	4	55	12	12	35	38	1.82
59997502--59997628	31	3.7	31	75	20	76	63	0	2	33	1.07
59997520--59997619	11	9.4	11	68	24	63	60	0	3	37	1.12
59997495--59997597	42	2.5	42	95	3	181	63	0	1	34	1.06
59997495--59997637	73	2.0	72	91	4	234	62	0	2	34	1.07
59997495--59997619	42	3.0	41	89	6	180	60	0	2	36	1.10
60004978--60005051	34	2.4	28	73	23	76	32	1	0	66	1.00
60019155--60019188	6	5.7	6	100	0	68	50	0	14	35	1.44
60024179--60024219	22	1.9	23	85	14	61	24	4	7	63	1.40
60024836--60024880	17	2.4	19	82	13	58	68	11	2	17	1.29
60036986--60037059	9	8.2	9	71	5	51	17	29	48	4	1.65
60036986--60037065	27	3.0	27	88	0	106	17	30	47	5	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60037046--60037197	39	3.9	39	93	1	234	13	34	43	7	1.74
60046484--60046526	22	2.0	22	86	9	61	30	0	2	67	1.03
60048501--60048549	23	2.1	23	92	0	80	24	18	22	34	1.96
60048505--60048556	23	2.3	23	86	0	77	26	19	21	32	1.97
60051275--60051314	19	2.1	19	85	0	53	20	12	22	45	1.84
60058115--60058157	4	10.8	4	84	0	59	46	20	2	30	1.63
60068734--60068758	6	4.2	6	100	0	50	52	0	16	32	1.44
60073818--60073854	11	3.4	11	96	0	65	54	0	5	40	1.24
60073840--60073902	26	2.4	26	89	2	90	65	0	0	34	0.93
60074444--60074506	26	2.5	25	75	12	65	52	1	1	44	1.20
60082889--60082921	3	11.0	3	100	0	66	33	0	0	66	0.92
60104251--60104327	29	2.6	29	83	4	91	49	14	12	23	1.78
60108889--60108996	21	5.1	21	84	5	137	37	22	21	19	1.95
60110119--60110151	5	6.6	5	86	13	50	57	0	0	42	0.98
60112360--60112395	18	2.0	18	88	0	54	30	0	8	61	1.26
60112419--60112474	20	3.2	16	79	18	51	53	1	1	42	1.21
60112435--60112473	20	2.0	20	94	0	69	48	0	2	48	1.15
60112569--60112608	19	2.0	20	95	4	73	47	10	10	32	1.70
60112710--60112748	20	2.0	20	90	10	62	51	0	0	48	1.00
60112704--60112767	28	2.2	29	76	15	71	56	3	0	40	1.15
60117546--60117602	28	2.0	29	83	10	73	28	1	3	66	1.18
60117555--60117628	38	2.0	37	81	7	87	28	1	5	64	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60146099--60146181	30	2.7	31	75	17	75	27	14	10	46	1.78
60152712--60152764	16	3.3	16	81	0	61	43	3	28	24	1.71
60152746--60152838	44	2.1	46	89	4	145	32	4	26	36	1.76
60152746--60152856	39	2.6	43	81	13	131	34	3	27	35	1.74
60153000--60153049	18	2.7	19	87	6	68	52	2	4	42	1.31
60153034--60153213	59	3.0	59	70	13	188	50	4	2	42	1.34
60153161--60153204	21	2.1	21	83	8	54	56	6	0	36	1.26
60153185--60153232	16	2.9	17	75	15	55	52	0	0	47	1.00
60153280--60153343	31	2.1	31	100	0	128	42	10	9	37	1.73
60160857--60160905	20	2.5	20	86	0	71	51	0	4	44	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240