genome.fa.s24.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  73  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23315661--23316010	89	3.9	88	80	3	360	30	20	21	27	1.98
23315661--23316010	44	7.9	44	80	3	353	30	20	21	27	1.98
23315719--23316010	133	2.2	133	91	0	476	29	20	21	28	1.98
23319422--23319457	3	12.0	3	100	0	72	0	66	0	33	0.92
23319457--23319485	3	9.7	3	100	0	58	31	0	0	68	0.89
23321361--23321628	49	5.6	48	92	4	452	29	29	7	33	1.84
23321361--23321628	96	2.8	96	98	0	509	29	29	7	33	1.84
23329474--23329516	22	2.0	22	86	13	63	32	18	2	46	1.62
23330698--23330802	3	33.3	3	70	19	63	60	3	4	31	1.36
23332154--23332628	50	9.5	51	66	5	263	25	24	21	29	1.99
23332122--23332681	100	5.6	100	86	1	739	24	24	20	29	1.99
23332135--23332681	199	2.7	199	86	1	720	24	24	21	29	1.99
23333623--23333668	23	2.0	23	100	0	92	26	17	8	47	1.76
23334306--23334345	20	2.0	20	85	5	53	15	2	7	75	1.14
23334306--23334379	15	5.0	14	78	15	69	12	2	6	78	1.05
23334313--23334380	32	2.2	30	89	5	100	10	2	7	79	1.03
23334321--23334380	14	4.0	14	78	16	66	11	1	6	80	0.98
23339296--23339367	3	23.3	3	73	16	58	61	2	4	31	1.29
23341553--23341599	24	2.0	24	100	0	94	25	4	19	51	1.65
23344485--23344520	17	2.1	17	100	0	72	30	5	16	47	1.70
23345850--23345907	29	2.0	29	96	0	107	29	6	22	41	1.80
23353603--23353645	22	2.0	22	85	0	59	55	11	13	18	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23354866--23354905	17	2.4	16	88	12	55	50	0	5	45	1.23
23354985--23355035	22	2.3	22	80	6	59	43	7	9	39	1.67
23355108--23355132	3	8.3	3	100	0	50	32	0	36	32	1.58
23355537--23355587	18	2.8	18	74	14	59	49	5	5	39	1.51
23355839--23355882	24	1.9	24	86	9	65	54	6	2	36	1.40
23360674--23360698	13	1.9	13	100	0	50	40	0	8	52	1.31
23362629--23362681	23	2.3	22	83	6	61	22	5	5	66	1.35
23362838--23362890	18	3.0	18	80	5	63	58	0	3	37	1.16
23362994--23363034	21	1.9	22	90	5	66	70	2	2	24	1.11
23369888--23369934	22	2.2	21	81	11	51	31	4	21	42	1.72
23370572--23370600	5	5.8	5	100	0	58	41	0	20	37	1.53
23370638--23371045	204	2.0	204	95	0	726	39	7	21	31	1.82
23377381--23377416	18	2.0	18	94	0	63	50	8	8	33	1.63
23382983--23383015	16	2.1	16	100	0	66	36	0	12	51	1.39
23384080--23384196	20	5.8	20	72	10	69	17	23	17	41	1.90
23387068--23387110	13	3.3	13	84	12	61	48	0	20	30	1.50
23387307--23387345	18	2.2	18	95	0	69	38	0	15	46	1.46
23397854--23397914	21	2.8	22	82	7	70	54	1	18	26	1.53
23417236--23417267	12	2.8	11	90	9	55	0	0	12	87	0.54
23418963--23419014	24	2.2	24	89	0	77	55	9	1	32	1.43
23420930--23420981	24	2.2	24	89	0	77	55	9	1	32	1.43
23421597--23421650	15	3.3	15	74	18	54	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23421612--23421648	19	1.9	19	88	0	56	51	0	0	48	1.00
23423948--23423978	2	15.5	2	100	0	62	0	51	0	48	1.00
23424102--23424136	10	3.6	10	88	3	54	2	31	5	60	1.35
23427338--23427368	2	15.5	2	100	0	62	0	51	0	48	1.00
23428094--23428130	2	18.5	2	100	0	74	0	48	0	51	1.00
23429749--23429807	30	1.9	32	86	6	86	38	8	8	44	1.65
23432040--23432122	27	3.1	27	77	3	87	18	24	33	24	1.96
23437330--23437368	16	2.4	16	100	0	78	58	5	0	35	1.20
23437323--23437364	16	2.3	19	76	23	54	61	4	0	33	1.17
23438507--23438540	14	2.5	14	95	4	61	14	0	35	50	1.44
23445306--23445337	3	10.7	3	100	0	64	65	0	0	34	0.93
23472352--23472412	31	2.0	31	83	6	79	36	13	6	44	1.69
23474066--23474112	23	2.0	23	91	0	76	36	6	0	57	1.24
23474347--23474385	19	2.0	21	85	10	55	23	0	10	66	1.22
23474452--23474480	3	9.7	3	100	0	58	0	0	31	68	0.89
23478334--23478396	20	2.8	22	71	24	60	0	28	0	71	0.86
23478312--23478504	40	5.2	38	79	14	183	0	31	0	68	0.94
23478349--23478462	21	5.7	21	74	19	118	0	30	0	69	0.89
23478335--23478504	40	4.5	39	83	11	203	0	30	0	68	0.94
23478380--23478505	4	29.8	4	73	20	80	0	30	0	68	0.96
23478352--23478504	54	2.8	54	75	15	145	0	31	0	67	0.95
23478554--23478627	27	2.7	27	83	4	96	16	25	32	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23485517--23485598	31	2.7	30	79	5	94	40	14	10	34	1.81
23487153--23487213	26	2.3	27	86	8	90	14	26	21	37	1.92
23487293--23487339	24	1.9	24	82	4	58	21	21	21	36	1.96
23489084--23489130	21	2.2	21	85	7	60	40	12	4	42	1.63
23490807--23491003	98	2.0	98	91	0	322	38	23	9	28	1.86
23492307--23492362	19	2.8	19	83	5	76	32	17	12	37	1.88
23492582--23493418	44	19.4	42	72	14	427	27	22	20	29	1.98
23492576--23492770	83	2.3	83	81	11	209	26	24	20	28	1.99
23492565--23493440	215	4.1	217	91	1	1413	26	22	20	30	1.98
23492565--23493440	432	2.0	431	91	1	1425	26	22	20	30	1.98
23493433--23494048	132	4.7	132	94	1	1056	24	24	20	30	1.98
23493433--23494045	263	2.3	263	94	0	1057	24	24	20	30	1.98
23495244--23495289	20	2.2	21	84	7	58	2	21	0	76	0.90
23495239--23495288	14	3.6	14	78	13	50	4	24	0	72	1.02
23499380--23499576	98	2.0	98	91	0	322	37	23	9	28	1.87
23500873--23500945	19	3.8	19	88	0	119	35	16	9	38	1.81
23501436--23501481	22	2.1	22	87	0	65	34	21	32	10	1.88
23504024--23504155	45	3.0	41	80	12	122	35	26	15	21	1.94
23504405--23504438	17	1.9	18	94	5	61	41	20	2	35	1.68
23518641--23518686	20	2.2	21	80	3	58	0	43	15	41	1.46
23522701--23522747	21	2.2	22	92	3	78	21	19	38	21	1.94
23527707--23527763	28	2.2	25	84	9	69	61	12	1	24	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23527868--23527910	21	2.0	21	90	0	68	34	37	13	13	1.85
23528951--23529124	41	4.2	41	89	1	233	22	28	20	28	1.98
23530675--23530733	11	5.9	11	74	22	51	57	0	1	40	1.09
23530659--23530796	44	3.4	42	85	10	180	63	0	2	34	1.06
23530752--23530777	11	2.4	11	100	0	52	53	0	7	38	1.30
23530653--23530766	17	6.6	17	70	18	76	59	0	1	38	1.08
23531877--23532390	154	3.3	152	84	4	665	30	10	7	50	1.66
23538212--23538271	30	2.0	30	100	0	120	33	26	6	33	1.83
23541669--23541720	21	2.5	19	84	12	59	50	0	1	48	1.12
23541669--23541721	20	2.6	20	82	11	63	49	0	1	49	1.12
23564058--23564102	22	2.0	22	82	0	54	62	2	4	31	1.27
23564471--23564523	20	2.6	22	77	19	62	56	0	1	41	1.10
23564463--23564521	30	2.0	31	90	6	95	55	0	1	42	1.09
23568181--23568207	1	27.0	1	100	0	54	100	0	0	0	0.00
23575827--23575905	6	13.2	6	95	0	95	16	8	31	43	1.79
23588666--23588695	13	2.2	14	94	5	53	46	0	6	46	1.29
23591525--23591580	4	13.8	4	92	3	94	46	25	1	26	1.63
23592137--23592185	6	8.0	6	90	4	80	16	16	18	48	1.81
23594948--23595020	32	2.5	27	78	19	92	26	2	19	52	1.59
23594961--23595021	32	1.9	32	96	0	113	27	3	18	50	1.62
23596226--23596263	20	1.9	20	100	0	76	47	0	2	50	1.15
23596356--23596393	15	2.7	14	84	11	51	42	15	2	39	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23596356--23596393	14	2.7	15	88	8	53	42	15	2	39	1.61
23606452--23606486	18	1.9	18	94	0	61	48	0	14	37	1.44
23606453--23606491	18	2.2	18	86	4	53	48	0	15	35	1.45
23606551--23606634	25	3.4	25	93	1	134	40	5	29	23	1.78
23608760--23608816	22	2.6	23	80	8	73	43	19	24	12	1.85
23608776--23608825	22	2.3	22	85	0	64	34	18	28	20	1.95
23609808--23609876	5	13.8	5	100	0	138	59	0	0	40	0.97
23614062--23614109	22	2.2	23	88	11	82	33	0	0	66	0.92
23614064--23614135	21	3.4	21	85	11	87	36	0	2	61	1.11
23619679--23619837	43	3.7	43	77	10	164	24	18	27	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240