genome.fa.s24.2.7.7.80.10.50.1000.191.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  191  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58420274--58420408	55	2.4	57	82	6	159	45	2	2	49	1.29
58420432--58420751	9	36.4	9	74	14	258	45	21	0	32	1.58
58420433--58420751	43	7.5	43	69	19	134	45	21	0	31	1.58
58420653--58420762	51	2.1	52	86	5	152	42	19	2	35	1.65
58426255--58426325	21	3.4	21	92	0	115	30	18	45	5	1.72
58426625--58426782	42	3.8	42	89	3	255	35	22	20	21	1.96
58426625--58426782	84	1.9	84	95	0	289	35	22	20	21	1.96
58426783--58426881	42	2.3	43	91	3	157	20	22	22	35	1.96
58427575--58427628	27	2.0	27	96	0	99	25	20	7	46	1.77
58430903--58430953	27	1.9	26	88	11	77	43	3	5	47	1.46
58431587--58431762	43	4.1	43	85	7	232	26	27	19	27	1.99
58432113--58432243	66	2.0	66	90	0	208	16	23	19	41	1.90
58434967--58435088	9	14.4	9	79	13	125	34	0	18	46	1.55
58434971--58435088	25	4.7	25	89	0	173	34	0	18	45	1.56
58434967--58435088	50	2.4	50	90	0	199	34	0	18	46	1.55
58434967--58435088	16	7.2	17	75	17	112	34	0	18	46	1.55
58434967--58435219	50	5.1	49	73	13	184	30	1	18	49	1.55
58435138--58435207	12	6.0	12	81	6	90	31	1	17	50	1.55
58435128--58435202	34	2.2	33	81	11	89	29	1	17	52	1.53
58435307--58435356	9	5.9	9	75	11	52	44	2	14	40	1.56
58439811--58439879	16	4.4	16	67	20	56	50	21	1	26	1.57
58439814--58439888	23	3.3	23	70	26	77	49	22	1	26	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58440290--58440473	41	4.5	41	87	6	239	37	28	18	15	1.91
58443405--58443463	25	2.4	25	88	0	82	23	16	25	33	1.96
58444848--58444927	25	3.2	25	78	5	74	20	26	22	31	1.98
58457444--58457482	18	2.2	17	86	13	53	33	0	20	46	1.51
58457708--58457829	23	5.3	23	86	0	181	23	20	25	30	1.99
58474845--58474876	15	2.1	16	94	5	57	21	37	18	21	1.94
58482513--58482655	50	2.7	50	83	6	169	30	18	26	25	1.98
58482907--58482957	12	4.2	12	78	7	59	52	5	23	17	1.66
58482917--58482955	20	2.0	20	89	0	60	51	5	25	17	1.66
58485194--58485264	36	2.0	36	83	5	90	38	15	21	25	1.92
58487799--58488010	25	8.5	25	70	8	119	37	19	26	16	1.93
58487799--58487979	49	3.6	49	76	8	152	36	19	27	16	1.93
58487832--58487917	24	3.5	24	74	3	82	34	19	29	16	1.94
58493137--58493180	17	2.4	19	82	17	58	45	0	2	52	1.13
58494360--58494409	23	2.2	23	100	0	100	24	8	14	54	1.66
58500784--58500809	3	8.7	3	100	0	52	65	0	0	34	0.93
58509043--58509072	3	10.0	3	100	0	60	33	0	0	66	0.92
58512128--58512156	13	2.2	13	100	0	58	37	6	6	48	1.57
58514034--58514100	33	2.0	33	97	0	125	29	11	19	38	1.88
58516784--58516839	27	2.1	27	100	0	112	17	16	14	51	1.76
58523720--58523745	7	3.7	7	100	0	52	26	0	0	73	0.84
58523735--58523799	29	2.2	29	83	0	85	38	1	0	60	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58523753--58523788	18	1.9	19	94	5	65	36	0	0	63	0.94
58546017--58546106	38	2.3	40	82	3	112	52	8	1	37	1.40
58546803--58546843	18	2.2	20	86	8	59	56	0	0	43	0.99
58546938--58547088	81	1.9	80	84	5	207	36	11	17	34	1.86
58550577--58550639	6	10.2	6	87	5	63	73	3	0	23	0.98
58550577--58550639	18	3.4	18	80	4	72	73	3	0	23	0.98
58551982--58552452	89	5.3	89	82	5	567	27	21	24	26	1.99
58551982--58552426	178	2.5	177	87	3	644	28	22	24	25	1.99
58552627--58552968	97	3.5	97	85	2	463	28	18	24	28	1.98
58552619--58552976	51	7.3	51	76	12	302	28	18	24	29	1.98
58555047--58555128	22	3.7	23	77	11	89	39	6	1	53	1.34
58555048--58555147	45	2.2	45	78	3	103	42	7	1	50	1.36
58556693--58556811	40	3.0	39	86	4	159	23	19	27	29	1.98
58567061--58567108	24	2.0	24	83	0	60	22	20	12	43	1.86
58567224--58567269	24	1.9	24	86	0	65	28	10	17	43	1.82
58567291--58567355	30	2.4	27	79	18	80	60	12	7	20	1.56
58571662--58571840	61	2.9	62	76	10	152	42	15	3	38	1.64
58572257--58572385	61	2.1	62	82	7	156	40	3	14	41	1.64
58580278--58580368	40	2.3	40	84	3	121	46	8	20	24	1.79
58580980--58581024	23	2.0	23	86	4	65	37	6	17	37	1.76
58588976--58589000	7	3.6	7	100	0	50	16	28	0	56	1.41
58598361--58598439	38	2.1	38	85	4	106	43	30	15	11	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58600107--58600133	3	9.0	3	100	0	54	0	33	0	66	0.92
58602248--58602281	17	1.9	18	88	5	52	55	0	5	38	1.24
58602265--58602298	15	2.3	15	90	10	52	67	0	5	26	1.13
58608011--58608057	19	2.4	20	75	10	53	42	0	0	57	0.98
58608819--58608884	33	2.0	33	100	0	132	12	6	39	42	1.67
58623351--58623436	42	2.0	42	84	4	111	41	17	23	17	1.89
58624700--58624884	89	2.1	89	89	2	282	28	23	24	23	2.00
58624877--58625367	44	10.9	44	70	14	245	29	19	21	28	1.98
58625262--58625367	43	2.4	44	84	1	133	28	19	24	27	1.99
58625302--58625389	44	2.0	44	81	0	104	29	20	22	27	1.99
58625725--58625781	27	2.1	27	100	0	114	17	19	31	31	1.95
58627170--58627208	3	13.0	3	83	0	51	30	5	2	61	1.31
58627170--58627217	15	3.3	15	88	2	71	29	6	2	62	1.31
58632888--58632932	22	2.0	22	83	8	56	35	2	13	48	1.54
58635613--58635694	25	3.3	24	73	24	64	25	24	17	32	1.96
58645024--58645060	15	2.5	15	100	0	74	37	5	5	51	1.48
58651937--58651994	27	2.1	26	84	9	71	31	1	3	63	1.21
58658747--58658868	39	3.0	41	78	9	131	24	15	28	31	1.96
58658768--58658868	43	2.5	40	84	7	116	26	15	24	32	1.96
58659721--58659789	20	3.4	21	73	11	72	59	2	4	33	1.32
58659720--58659787	21	3.3	21	72	2	66	61	2	4	30	1.30
58659771--58659841	28	2.5	28	77	4	72	63	0	2	33	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58659764--58659830	28	2.4	28	80	2	73	67	1	1	29	1.09
58661579--58661621	11	3.9	11	81	0	50	34	0	4	60	1.17
58667339--58667375	9	4.0	9	89	6	56	40	0	0	59	0.97
58667679--58667712	16	2.1	16	88	0	50	29	11	5	52	1.61
58679490--58679949	132	3.5	132	90	0	735	28	18	24	28	1.98
58679580--58679921	44	7.8	44	65	11	137	30	18	23	28	1.97
58684852--58684887	18	2.0	18	100	0	72	16	38	22	22	1.93
58685128--58685324	101	2.0	101	87	0	286	21	26	16	35	1.95
58689186--58689233	23	2.2	22	85	7	62	64	6	0	29	1.18
58689453--58689604	76	2.0	76	100	0	304	35	5	13	46	1.65
58691871--58691906	3	12.0	3	93	0	63	33	2	0	63	1.08
58695683--58695744	19	3.3	18	83	14	81	66	1	0	32	1.02
58695683--58695763	18	4.4	18	76	15	69	64	1	0	34	1.02
58696051--58696092	19	2.3	18	88	8	66	42	0	0	57	0.99
58696421--58696614	45	4.3	45	74	11	173	27	24	25	22	2.00
58696421--58696925	90	5.7	90	82	3	518	28	22	24	24	1.99
58696985--58697148	50	3.3	50	77	5	179	35	23	15	25	1.94
58697354--58697383	15	2.0	15	93	0	51	70	13	0	16	1.18
58698563--58698602	3	13.3	3	100	0	80	35	0	0	65	0.93
58701613--58701674	19	3.3	18	83	14	81	66	1	0	32	1.02
58701613--58701693	18	4.4	18	76	15	69	64	1	0	34	1.02
58704328--58704352	3	8.3	3	100	0	50	32	32	0	36	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58710405--58710434	15	2.0	15	100	0	60	33	20	0	46	1.51
58716249--58716307	31	1.9	31	89	0	91	37	3	20	38	1.69
58717422--58717460	12	3.2	12	85	0	60	61	10	2	25	1.41
58724652--58724693	18	2.3	18	80	8	50	69	9	2	19	1.28
58725870--58726002	29	4.2	34	73	13	115	20	19	29	30	1.97
58725827--58725989	63	2.6	63	80	0	191	20	21	28	29	1.98
58725809--58726008	63	3.2	62	75	5	186	20	21	28	30	1.98
58726487--58726529	20	2.1	20	82	4	50	27	23	20	27	1.99
58728670--58728709	20	2.0	20	90	0	62	50	12	10	27	1.72
58728658--58728724	34	1.9	35	90	3	109	46	13	8	31	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240