genome.fa.s24.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  184  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56698733--56698793	31	2.0	31	100	0	122	39	8	13	39	1.74
56727595--56727623	14	2.0	15	93	6	51	27	0	20	51	1.47
56729737--56729907	23	7.3	23	68	11	114	27	18	13	40	1.88
56729753--56729931	24	7.6	24	72	3	166	26	18	14	40	1.89
56729737--56729956	47	4.7	47	94	0	377	26	18	14	40	1.89
56729737--56729998	94	2.8	94	88	1	328	27	17	15	39	1.90
56729737--56729998	141	1.9	141	86	1	373	27	17	15	39	1.90
56729973--56730022	23	2.2	23	85	0	64	30	18	16	36	1.92
56729981--56730024	23	1.9	23	90	0	70	27	15	15	40	1.88
56729915--56730094	71	2.5	73	79	7	192	29	13	17	39	1.88
56736413--56736466	25	2.2	25	86	6	74	22	14	5	57	1.58
56737587--56737679	13	7.3	13	71	4	57	78	4	7	9	1.08
56737593--56737691	12	8.3	11	71	18	65	79	3	9	8	1.02
56737627--56737668	21	2.1	19	86	8	57	83	7	2	7	0.89
56737613--56737693	33	2.4	34	79	8	85	79	3	8	8	1.06
56739910--56740062	28	5.5	28	91	1	220	32	27	12	27	1.92
56739910--56740062	55	2.8	56	88	3	220	32	27	12	27	1.92
56743254--56744079	44	19.0	44	72	9	179	29	19	24	26	1.99
56743253--56743761	216	2.3	217	90	2	790	31	19	23	26	1.98
56743684--56744135	87	5.2	87	83	1	546	28	20	24	26	1.99
56744292--56744424	50	2.7	50	84	4	162	33	21	15	29	1.94
56746195--56746251	9	6.3	9	78	8	53	29	7	3	59	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56746195--56746261	27	2.5	27	82	4	73	32	5	4	56	1.43
56746188--56746239	3	17.3	3	76	7	52	32	7	0	59	1.26
56749412--56749693	68	4.3	67	77	9	274	34	15	21	28	1.94
56749486--56749605	61	2.0	61	85	6	163	35	15	20	29	1.92
56749418--56749667	129	1.9	129	82	3	315	34	16	21	28	1.94
56754076--56754240	26	6.4	25	76	5	132	23	16	25	35	1.95
56756166--56756865	349	2.0	349	99	0	1391	26	15	26	31	1.96
56760802--56760918	9	12.7	9	69	17	62	42	0	3	52	1.23
56760806--56760932	9	13.6	9	67	14	53	38	0	3	56	1.23
56760860--56760931	20	3.7	19	88	7	83	37	0	5	56	1.22
56760879--56760931	20	2.7	19	94	2	88	33	0	5	60	1.20
56764417--56764459	19	2.3	19	88	8	61	48	11	16	23	1.78
56769752--56770189	51	8.6	51	76	5	420	28	14	27	29	1.95
56769756--56770193	102	4.3	102	94	0	759	28	13	28	29	1.95
56770391--56770463	37	1.9	38	86	2	103	42	2	23	31	1.68
56770708--56770758	21	2.4	21	93	0	84	64	1	1	31	1.15
56775115--56775249	39	3.5	39	91	0	216	45	25	3	25	1.69
56780014--56780154	45	2.9	49	77	12	146	41	20	17	19	1.90
56780053--56780157	45	2.3	45	88	3	149	43	19	16	20	1.88
56779995--56780157	51	3.3	49	78	14	174	41	19	18	20	1.90
56780361--56780446	39	2.2	40	83	6	104	39	18	5	36	1.75
56780526--56780566	18	2.2	19	83	12	50	36	19	4	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56780556--56780605	25	2.0	25	84	11	66	36	22	0	42	1.54
56781379--56781419	13	3.2	13	86	6	57	0	29	0	70	0.87
56781618--56781680	8	7.8	8	79	10	74	61	1	0	36	1.05
56782555--56782652	48	2.0	48	96	0	178	28	16	22	32	1.95
56788360--56788425	31	2.2	31	78	5	73	28	19	6	45	1.74
56788994--56789019	12	2.2	12	100	0	52	46	0	15	38	1.46
56790330--56790360	6	5.2	6	92	0	53	51	3	0	45	1.17
56797243--56797309	27	2.5	26	76	21	68	28	13	13	44	1.81
56797254--56797312	27	2.2	27	88	11	86	25	13	11	49	1.76
56802745--56802917	45	4.2	39	81	11	159	19	20	20	39	1.93
56802772--56802971	45	4.4	45	89	0	283	20	19	20	41	1.91
56805022--56805076	15	3.5	15	76	9	56	43	9	0	47	1.35
56805023--56805093	32	2.2	32	89	0	106	45	9	0	45	1.37
56807099--56807268	45	3.8	45	89	0	250	22	15	15	46	1.83
56820760--56820794	15	2.3	15	100	0	70	5	20	14	60	1.54
56822957--56823012	29	1.9	29	85	7	78	25	7	25	42	1.80
56823766--56823837	31	2.4	30	86	4	92	45	9	8	36	1.67
56827628--56827697	3	23.3	3	94	0	122	67	0	30	2	1.05
56830800--56831018	80	2.7	80	78	2	233	36	25	16	21	1.94
56844343--56844389	18	2.7	17	81	12	51	55	19	8	17	1.67
56846501--56846541	21	2.0	21	85	9	57	36	4	7	51	1.51
56847256--56847306	24	2.2	23	82	6	68	70	0	0	29	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56847709--56847799	30	3.2	29	76	20	102	24	5	0	70	1.08
56847728--56847769	13	3.2	13	76	10	50	21	9	0	69	1.17
56847696--56847779	24	3.2	24	74	20	80	23	5	0	70	1.09
56847695--56847799	32	3.6	30	71	19	98	25	5	0	68	1.11
56847767--56847816	23	2.2	23	80	19	61	30	2	2	66	1.14
56847727--56847833	32	3.6	31	78	15	93	27	5	0	66	1.20
56847750--56847823	31	2.4	31	80	14	82	29	2	1	66	1.14
56848214--56848341	59	2.3	55	83	8	159	34	15	10	39	1.83
56848230--56848362	59	2.2	60	80	9	148	32	15	9	42	1.79
56851751--56851823	25	3.0	24	82	13	87	35	20	24	19	1.95
56851752--56851945	24	7.8	24	76	6	124	35	19	26	19	1.95
56851850--56851956	24	4.3	26	82	5	107	31	20	28	19	1.97
56875079--56875123	7	6.0	8	89	10	69	8	0	40	51	1.33
56875079--56875123	15	3.1	15	90	6	74	8	0	40	51	1.33
56875082--56875123	22	1.9	22	90	9	68	7	0	42	50	1.30
56879491--56879574	27	3.1	27	80	0	96	22	19	16	41	1.90
56894921--56894947	12	2.2	12	100	0	54	25	14	18	40	1.89
56894940--56894998	28	2.1	27	84	9	75	32	6	10	50	1.62
56905052--56905093	22	2.1	19	86	13	57	45	2	0	52	1.13
56905132--56905166	17	2.1	17	89	5	54	42	0	0	57	0.99
56905589--56905629	21	1.9	21	85	5	55	34	17	12	36	1.87
56909867--56909911	6	7.5	6	79	0	54	77	4	4	13	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56931817--56931940	62	2.0	61	95	1	221	45	23	8	22	1.78
56932196--56932421	6	37.7	6	80	7	174	54	14	10	20	1.69
56932196--56932421	18	12.9	18	79	7	196	54	14	10	20	1.69
56932428--56932458	16	1.9	16	100	0	62	51	19	3	25	1.62
56933753--56934050	50	5.8	50	86	2	353	26	20	28	23	1.99
56940898--56940946	22	2.3	20	82	6	53	65	0	8	26	1.20
56940904--56940983	16	4.6	18	69	23	55	63	1	7	27	1.29
56940920--56940991	33	2.2	33	82	5	92	66	2	5	25	1.27
56994115--56994146	10	3.1	11	86	13	50	6	15	0	78	0.95
57005895--57005942	24	2.0	23	84	4	60	29	0	8	62	1.24
57012328--57012389	10	6.0	10	85	7	79	50	0	0	50	1.00
57012329--57012387	11	5.5	11	86	8	86	49	0	0	50	1.00
57012328--57012387	21	2.9	21	97	0	111	48	0	0	51	1.00
57012921--57013233	42	7.4	42	85	4	373	30	20	22	26	1.98
57013665--57013712	21	2.3	21	81	0	60	2	45	18	33	1.61
57019091--57019341	9	29.8	9	73	12	176	29	3	19	47	1.65
57019089--57019388	25	11.9	25	78	7	243	30	3	19	47	1.64
57019152--57019299	16	9.0	16	72	14	106	29	2	20	47	1.64
57019092--57019181	34	2.6	36	77	10	98	28	3	23	44	1.69
57019152--57019340	41	4.8	41	76	15	182	29	2	19	48	1.62
57019276--57019446	93	1.8	92	86	7	247	29	2	15	52	1.57
57019658--57019690	15	2.2	15	94	0	57	54	3	3	39	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57021119--57021171	22	2.5	22	96	3	99	37	26	3	32	1.74
57021132--57021208	15	5.3	14	72	7	55	41	28	1	28	1.64
57021135--57021208	29	2.6	29	80	6	71	40	28	1	29	1.65
57021976--57022121	77	1.9	76	81	4	177	30	17	19	32	1.95
57021766--57022572	266	3.1	266	91	3	1319	29	19	18	31	1.96
57022540--57022817	113	2.4	115	77	6	258	31	20	21	27	1.98
57022615--57022908	113	2.6	114	83	2	369	30	18	22	28	1.97
57023266--57023298	11	2.8	12	86	4	50	33	3	12	51	1.54
57032333--57032386	21	2.6	21	82	5	65	38	3	0	57	1.17
57032333--57032417	21	4.2	20	71	14	50	36	3	1	58	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240