genome.fa.s24.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  119  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37065337--37065558	43	5.2	43	81	8	229	28	30	16	23	1.96
37065338--37065558	85	2.6	87	82	6	263	28	30	16	23	1.96
37067566--37067595	15	2.0	15	100	0	60	60	20	6	13	1.55
37070410--37070469	7	8.6	7	81	5	59	28	50	3	18	1.63
37070600--37070762	87	1.9	89	92	2	276	44	28	0	26	1.59
37070609--37070788	87	2.0	89	87	4	258	45	27	0	26	1.58
37070807--37070838	7	4.6	7	92	0	55	28	53	3	15	1.57
37070858--37070890	14	2.3	15	94	5	59	36	33	0	30	1.58
37070939--37070975	14	2.6	14	91	0	56	45	32	0	21	1.52
37071236--37071508	41	6.7	41	87	0	384	31	24	19	25	1.98
37071547--37071641	40	2.4	38	86	8	136	17	20	23	38	1.93
37083401--37083519	23	5.3	23	85	3	154	29	26	21	22	1.99
37083401--37083518	46	2.6	46	88	4	170	29	26	22	22	1.99
37083742--37083782	18	2.3	18	88	12	59	43	19	0	36	1.51
37083967--37084025	30	2.0	30	83	6	75	30	22	3	44	1.69
37086880--37086926	22	2.1	22	88	7	69	17	2	2	78	0.94
37091679--37091707	12	2.3	13	94	5	51	62	13	10	13	1.55
37100392--37100487	46	2.1	46	82	3	113	32	21	21	23	1.98
37105034--37105061	14	2.0	14	100	0	56	64	0	0	35	0.94
37105083--37105125	23	1.9	23	85	4	61	62	4	4	27	1.35
37106706--37106739	15	2.3	15	100	0	68	14	11	38	35	1.83
37112645--37112709	11	6.3	10	72	18	53	26	4	1	67	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37112653--37112707	22	2.5	22	82	8	60	27	5	1	65	1.25
37112917--37112941	11	2.3	11	100	0	50	16	0	0	84	0.63
37114687--37114727	21	2.0	21	95	0	73	29	14	26	29	1.95
37114874--37114978	44	2.5	40	78	15	115	36	5	24	33	1.79
37115309--37115511	102	2.0	103	91	0	327	21	9	25	43	1.82
37116365--37116402	20	1.9	20	84	10	51	65	0	5	28	1.14
37119308--37119853	47	11.6	47	91	4	816	29	29	8	32	1.87
37119477--37119547	22	3.3	22	63	21	60	30	28	11	29	1.91
37119513--37119853	49	7.1	49	93	3	604	30	28	8	32	1.86
37119308--37119853	145	3.9	145	91	5	895	29	29	8	32	1.87
37123603--37123662	15	4.0	15	80	0	66	23	6	26	43	1.78
37125959--37126053	21	4.5	21	79	0	73	36	30	12	20	1.89
37127107--37127158	23	2.3	23	83	3	61	0	28	0	71	0.87
37136619--37136858	50	4.7	50	80	6	209	28	21	28	22	1.99
37141766--37141800	18	1.9	18	88	0	52	65	5	0	28	1.15
37145866--37146099	51	4.6	51	78	6	224	29	14	25	29	1.95
37145870--37146099	102	2.3	102	89	3	347	29	14	26	30	1.95
37145872--37146135	102	2.6	102	83	6	315	29	14	25	29	1.95
37146082--37146200	63	1.9	62	91	1	193	30	15	22	31	1.95
37150079--37150580	47	10.6	47	91	2	779	32	8	29	28	1.87
37150079--37150580	96	5.3	95	90	3	780	32	8	29	28	1.87
37150079--37150580	143	3.5	143	92	1	801	32	8	29	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37152805--37153152	40	8.7	40	89	2	513	25	22	27	24	2.00
37156819--37157320	47	10.6	47	91	1	770	32	8	29	29	1.87
37156819--37157320	96	5.3	96	89	4	770	32	8	29	29	1.87
37156819--37157320	143	3.5	143	92	2	803	32	8	29	29	1.87
37164665--37164697	17	2.1	17	88	11	52	30	0	6	63	1.18
37164795--37165133	51	6.7	51	80	7	320	28	14	26	30	1.95
37164799--37164881	26	3.2	26	65	21	66	28	10	26	33	1.90
37164795--37165136	102	3.4	102	84	5	428	28	14	26	30	1.95
37166558--37166591	16	2.1	16	88	0	50	8	14	8	67	1.41
37169490--37169569	37	2.2	37	84	6	103	41	10	16	32	1.81
37169510--37169591	35	2.4	34	82	10	94	45	14	13	26	1.82
37169490--37169838	17	19.4	18	68	17	156	44	10	14	30	1.79
37169613--37169654	20	2.1	20	86	8	59	38	7	14	40	1.73
37169700--37169787	35	2.5	35	81	3	88	48	11	12	27	1.75
37169528--37169921	17	22.2	17	68	18	114	46	11	13	28	1.78
37169562--37169905	144	2.4	142	80	8	342	47	11	12	28	1.76
37169507--37169798	161	1.8	162	81	3	374	44	11	13	31	1.79
37169722--37169803	19	4.4	19	83	6	89	45	9	13	31	1.76
37169550--37169834	126	2.3	125	79	9	296	46	11	13	28	1.78
37169733--37169905	18	9.6	18	72	12	106	47	10	14	27	1.76
37170637--37170690	16	3.4	16	84	2	74	0	24	0	75	0.80
37170639--37170702	25	2.6	26	85	7	80	1	25	0	73	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37170637--37170703	22	3.1	21	78	15	66	1	23	0	74	0.90
37170640--37170702	3	20.7	3	74	9	56	1	25	0	73	0.93
37171033--37171151	29	4.1	29	76	3	123	40	7	20	31	1.80
37171033--37171151	58	2.0	58	82	4	141	40	7	20	31	1.80
37171352--37172325	77	12.7	75	86	6	971	36	20	16	27	1.94
37179740--37179788	24	2.0	24	84	0	62	46	10	0	42	1.37
37180121--37180174	26	2.1	26	89	0	81	35	12	9	42	1.75
37180543--37180686	72	2.0	72	98	0	279	26	9	21	43	1.82
37180877--37180904	14	2.0	14	100	0	56	57	0	0	42	0.99
37181016--37181073	20	2.9	20	92	0	89	51	13	6	27	1.66
37181057--37181096	14	2.9	14	84	0	53	42	17	7	32	1.77
37187833--37187882	19	2.6	18	81	12	55	44	4	8	44	1.52
37187855--37188143	17	16.1	18	69	11	96	42	10	15	30	1.81
37187978--37188018	20	2.0	20	86	9	57	39	7	14	39	1.74
37187951--37188056	55	1.9	55	86	3	151	43	13	15	28	1.84
37188034--37188102	19	3.7	20	79	11	67	43	5	15	34	1.71
37187875--37188207	17	18.8	17	67	9	94	45	11	14	28	1.79
37188233--37188296	17	3.6	17	81	6	74	37	10	18	32	1.86
37189207--37189564	34	10.2	35	71	7	170	47	13	12	26	1.78
37189167--37189574	17	23.3	17	68	17	137	46	12	13	27	1.79
37189253--37189573	35	9.0	34	71	13	154	45	11	14	28	1.80
37189164--37189445	52	5.3	55	72	11	196	45	13	12	28	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37189554--37189594	21	2.0	21	85	0	55	46	7	4	41	1.53
37189591--37189649	17	3.4	17	80	17	68	35	6	20	37	1.79
37189259--37189644	141	2.7	141	79	8	349	45	10	14	29	1.79
37190272--37190324	13	3.8	13	74	16	52	0	28	0	71	0.86
37190273--37190323	3	16.7	3	84	11	68	0	29	0	70	0.87
37190273--37190323	16	3.3	16	89	5	70	0	29	0	70	0.87
37195694--37195755	31	2.0	31	96	0	115	17	6	37	38	1.76
37197276--37197416	39	3.6	39	86	3	194	29	2	21	46	1.63
37208623--37208657	18	1.9	18	88	0	52	51	5	34	8	1.56
37221407--37221453	22	2.1	22	84	0	58	46	17	17	19	1.84
37221445--37221554	32	3.5	32	78	1	114	35	23	21	19	1.96
37221595--37221654	27	2.2	27	88	5	86	33	20	23	23	1.97
37221726--37221807	24	3.4	24	84	0	92	43	20	8	26	1.80
37221740--37221809	24	2.9	24	86	0	95	44	21	7	27	1.78
37221825--37222116	27	10.9	27	76	5	193	23	19	20	36	1.95
37221841--37222116	54	5.1	53	75	7	218	23	18	21	36	1.95
37221851--37222129	108	2.6	109	83	4	352	23	18	20	37	1.94
37226774--37226963	51	3.8	50	78	2	200	31	26	15	26	1.96
37233148--37233236	28	3.1	27	76	15	63	51	1	1	46	1.15
37236517--37236654	51	2.9	46	70	14	125	29	15	26	27	1.96
37236500--37236781	50	5.7	51	80	6	274	28	17	25	28	1.97
37239668--37239692	12	2.1	12	100	0	50	36	0	32	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37247858--37247934	35	2.1	37	85	4	104	32	15	15	36	1.89
37252174--37252235	21	3.0	20	81	6	79	35	25	22	16	1.94
37252944--37252969	13	2.0	13	100	0	52	61	0	0	38	0.96
37260073--37260123	26	2.0	26	88	0	75	15	19	3	60	1.50
37261565--37261609	14	3.0	15	80	9	56	33	0	17	48	1.48
37261910--37261953	21	2.1	21	86	0	61	31	6	25	36	1.82
37270333--37270385	23	2.2	24	96	3	99	39	0	0	60	0.97
37272614--37272656	21	2.0	21	90	0	68	39	27	4	27	1.76
37274411--37274454	7	6.3	7	97	0	79	84	0	2	13	0.73
37277277--37277323	6	7.8	6	100	0	94	51	0	31	17	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240