genome.fa.s24.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  164  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51282227--51282266	21	1.9	21	89	0	62	32	20	45	2	1.64
51282747--51283037	85	3.4	84	85	7	369	25	24	20	29	1.99
51282747--51283037	42	6.9	43	87	5	375	25	24	20	29	1.99
51282752--51283042	128	2.3	125	85	6	383	24	24	20	30	1.99
51283198--51283238	21	2.0	21	90	0	64	53	9	4	31	1.55
51289397--51289469	11	6.9	11	79	17	75	50	0	0	49	1.00
51289408--51289516	39	2.7	39	91	2	164	55	0	0	44	0.99
51289492--51289538	17	2.8	17	83	0	58	61	0	0	38	0.96
51289431--51289540	49	2.2	51	83	6	136	57	0	0	42	0.98
51294886--51294942	26	2.2	26	100	0	114	49	15	21	14	1.80
51294886--51294958	26	2.8	26	91	2	92	49	15	19	16	1.80
51294756--51294931	95	1.9	93	95	1	300	48	18	13	18	1.80
51299052--51299081	13	2.2	14	94	5	53	80	0	0	20	0.72
51299810--51299858	25	2.0	25	83	0	62	38	0	16	44	1.48
51305758--51305795	19	2.1	17	90	9	58	31	0	5	63	1.17
51306214--51306248	16	2.2	16	90	5	54	42	5	0	51	1.25
51306680--51306717	19	2.0	19	90	10	60	39	2	5	52	1.38
51307133--51307163	16	2.0	16	93	6	55	58	6	6	29	1.48
51309692--51309724	6	5.5	6	100	0	66	15	33	0	51	1.43
51310050--51310096	5	9.2	5	80	13	51	36	14	25	23	1.93
51310745--51310804	30	2.0	30	83	3	75	41	0	38	20	1.52
51313749--51313890	62	2.3	62	83	7	182	25	27	24	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51314832--51314906	24	3.2	24	71	16	66	34	16	9	40	1.80
51314896--51314963	34	2.0	34	94	0	118	35	20	11	32	1.89
51314978--51315044	27	2.5	27	92	4	109	29	31	19	19	1.96
51315104--51315181	15	4.9	15	76	9	66	26	28	19	25	1.99
51315480--51315535	28	2.0	28	100	0	112	32	3	35	28	1.74
51316443--51316468	5	5.2	5	100	0	52	42	19	19	19	1.90
51317222--51317281	30	2.0	31	86	3	86	40	0	40	20	1.52
51317494--51317548	9	6.1	9	86	0	83	29	9	14	47	1.75
51317494--51317548	18	3.1	18	91	0	92	29	9	14	47	1.75
51317602--51317632	9	3.4	9	90	0	53	38	22	12	25	1.90
51320406--51320441	18	2.0	18	88	0	54	8	13	8	69	1.36
51321826--51321895	36	1.9	37	88	2	106	8	27	14	50	1.72
51324596--51324698	51	2.0	51	94	3	181	45	18	7	28	1.77
51324645--51324754	33	3.3	33	80	8	125	42	18	7	31	1.77
51327717--51327783	18	3.6	18	71	15	55	47	0	4	47	1.22
51327657--51328229	120	4.8	120	97	0	1038	44	1	6	47	1.40
51328138--51328773	181	3.5	181	98	0	1227	39	4	8	46	1.56
51328681--51328944	121	2.2	120	93	0	438	45	1	4	48	1.35
51328906--51328938	15	2.3	15	89	5	50	57	0	0	42	0.98
51329660--51329740	11	7.4	11	77	0	54	14	4	13	66	1.40
51329812--51329863	26	2.0	26	85	10	72	44	0	0	55	0.99
51329824--51329855	15	2.0	17	88	11	50	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51331923--51331980	28	2.1	28	93	0	98	39	5	18	36	1.74
51335142--51335597	151	3.0	150	93	0	761	33	13	22	30	1.92
51337906--51337943	15	2.7	14	88	8	51	57	7	0	34	1.28
51369904--51369951	11	4.0	11	78	19	51	27	2	4	66	1.21
51370239--51370630	79	4.7	82	80	8	352	31	15	14	39	1.87
51370231--51370454	88	2.5	87	86	2	313	31	14	14	38	1.87
51370660--51371066	84	4.9	83	82	8	431	31	11	12	44	1.78
51370557--51371066	249	2.1	246	78	12	519	31	12	12	43	1.80
51370660--51371066	165	2.4	166	83	9	492	31	11	12	44	1.78
51370670--51371127	84	5.6	79	80	10	319	30	12	12	44	1.79
51371082--51371194	59	1.9	60	83	1	147	23	8	14	53	1.69
51371568--51371638	16	4.7	16	73	18	71	36	0	0	63	0.95
51371581--51371638	27	2.1	27	96	0	107	36	0	0	63	0.94
51371624--51371656	13	2.4	14	90	5	50	33	0	3	63	1.10
51380870--51380899	2	15.0	2	100	0	60	0	50	0	50	1.00
51384931--51385170	26	9.2	26	82	0	257	35	27	16	21	1.95
51387352--51387573	42	5.5	42	82	10	291	22	15	27	34	1.94
51387436--51387610	76	2.3	75	90	1	260	22	18	25	33	1.97
51389890--51389940	22	2.3	22	75	0	57	54	7	3	33	1.47
51390306--51390331	10	2.6	10	100	0	52	61	0	0	38	0.96
51397090--51397117	14	2.0	14	100	0	56	57	0	7	35	1.26
51400382--51400901	106	4.9	107	91	2	796	35	17	15	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51400942--51400981	21	1.9	21	90	10	64	52	2	15	30	1.55
51400995--51401038	15	2.9	15	82	3	52	81	6	4	6	0.97
51401300--51401331	3	10.3	3	93	6	55	65	3	0	31	1.08
51402846--51403102	44	6.0	42	72	11	180	26	21	21	31	1.98
51402896--51403142	129	1.9	128	85	4	345	26	21	21	31	1.98
51403159--51403353	44	4.4	43	68	15	121	27	27	18	26	1.98
51403110--51403468	129	2.8	130	87	3	537	27	27	17	28	1.98
51404753--51404798	22	2.1	21	88	4	65	0	23	0	76	0.79
51404744--51404815	19	3.9	18	83	8	83	0	22	1	76	0.86
51404745--51404795	26	2.0	26	84	7	68	0	25	0	74	0.82
51404746--51404815	28	2.5	26	82	11	77	0	21	1	77	0.85
51404750--51404816	29	2.3	29	82	7	73	0	22	1	76	0.87
51405794--51406031	106	2.2	106	94	1	415	34	19	16	29	1.94
51406070--51406109	21	1.9	21	90	10	64	52	2	15	30	1.55
51406422--51406465	3	14.3	3	90	4	70	63	2	2	31	1.19
51407117--51407142	12	2.2	12	100	0	52	7	7	7	76	1.15
51421213--51421299	28	3.1	28	88	0	120	36	24	24	14	1.93
51423039--51423142	50	2.1	50	80	12	115	59	1	0	38	1.08
51423081--51423118	11	3.4	11	96	3	67	57	0	0	42	0.98
51432746--51432778	16	2.0	17	88	5	50	39	9	0	51	1.34
51434038--51434100	24	2.6	25	80	7	69	20	19	11	49	1.78
51447124--51447387	143	1.9	138	82	6	329	49	6	14	30	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51447644--51447679	14	2.6	14	100	0	72	75	0	5	19	1.00
51453559--51453596	17	2.2	17	86	9	51	63	0	2	34	1.09
51455578--51455647	34	2.1	32	82	10	79	22	7	5	64	1.40
51465306--51465513	46	4.6	46	93	1	341	32	15	22	29	1.95
51465306--51465513	92	2.3	92	95	2	377	32	15	22	29	1.95
51473817--51473874	29	2.0	28	86	3	80	32	1	22	43	1.64
51477439--51477470	15	2.1	16	94	5	57	84	0	12	3	0.74
51480342--51480376	18	2.0	17	88	5	52	77	8	14	0	0.99
51480399--51480440	7	6.0	7	100	0	84	42	0	42	14	1.45
51493713--51493898	40	4.7	40	87	5	234	25	27	22	24	2.00
51499081--51499208	41	3.0	42	80	8	152	32	27	17	21	1.96
51502691--51502754	10	5.7	10	76	16	56	3	18	3	75	1.08
51502679--51502750	17	4.1	18	78	16	62	4	19	2	73	1.12
51506215--51506361	76	1.9	76	91	0	240	44	25	10	19	1.82
51516882--51516907	6	4.3	6	100	0	52	19	0	0	80	0.71
51520364--51520424	17	3.4	17	78	15	61	22	27	0	49	1.50
51522899--51522945	18	2.5	20	82	10	62	42	2	6	48	1.40
51528171--51528211	21	1.9	22	85	5	57	24	17	14	43	1.86
51533906--51533941	14	2.6	14	86	0	54	61	0	0	38	0.96
51534508--51534532	7	3.6	7	100	0	50	28	24	0	48	1.52
51537550--51537897	52	6.9	52	85	7	468	34	14	22	28	1.93
51537602--51537908	98	3.1	98	91	1	438	35	14	22	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51537536--51537897	150	2.4	144	92	5	580	34	14	22	28	1.93
51537872--51538091	37	6.0	37	95	1	381	37	16	21	24	1.93
51555869--51555954	32	2.7	32	78	8	93	47	16	8	27	1.74
51555934--51556000	34	1.9	35	87	3	100	46	8	8	35	1.67
51563076--51563117	13	3.5	13	75	18	54	50	11	0	38	1.40
51563076--51563126	23	2.2	23	96	0	93	50	11	0	37	1.39
51566171--51566279	40	2.7	41	84	7	132	20	22	31	25	1.98
51568483--51568864	77	5.0	77	82	3	430	23	19	16	40	1.91
51568481--51568818	37	8.8	37	70	12	148	23	19	16	40	1.91
51569922--51569975	16	3.2	17	82	10	58	59	0	3	37	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240