genome.fa.s24.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  152  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47863701--47863745	5	9.0	5	100	0	90	40	0	0	60	0.97
47864684--47864791	25	4.6	24	78	9	91	15	24	18	41	1.89
47864732--47864785	21	2.5	22	93	3	92	11	24	18	46	1.81
47872818--47872862	21	2.1	21	83	0	54	46	0	0	53	1.00
47872853--47872904	18	2.9	18	83	11	63	71	1	5	21	1.17
47872860--47872900	17	2.5	16	92	4	64	70	2	7	19	1.22
47872853--47872901	17	2.8	17	79	17	55	71	2	6	20	1.18
47872895--47872944	17	2.8	18	76	14	50	58	0	4	38	1.17
47872909--47872950	20	2.2	20	82	4	50	52	2	2	42	1.27
47881932--47881993	18	3.2	21	65	21	62	41	16	9	32	1.80
47881918--47881999	37	2.3	36	95	4	148	42	17	10	29	1.83
47884419--47884553	67	2.0	67	91	0	216	28	31	17	22	1.96
47890253--47890294	15	2.7	16	82	10	52	42	0	0	57	0.99
47891023--47891112	17	5.2	17	69	15	58	65	2	4	27	1.23
47891140--47891205	20	3.3	20	79	10	55	66	4	0	28	1.11
47893996--47894037	16	2.6	16	84	3	57	33	0	0	66	0.92
47896623--47896650	10	2.8	10	100	0	56	0	10	0	89	0.49
47899482--47899641	43	3.8	42	80	9	191	22	18	26	31	1.97
47899486--47899641	84	1.9	84	86	5	226	23	18	27	30	1.98
47899802--47899833	16	1.9	17	93	6	57	40	0	21	37	1.54
47906027--47906068	17	2.5	17	92	3	68	52	0	11	35	1.38
47906758--47906871	58	2.0	58	96	0	210	44	9	14	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47908563--47908615	27	1.9	28	84	3	72	49	0	1	49	1.12
47908562--47908621	27	2.2	26	80	11	66	51	0	1	46	1.10
47908649--47908724	17	4.9	16	73	13	70	47	0	2	50	1.15
47908675--47908720	15	3.0	15	76	17	58	47	0	0	52	1.00
47908756--47908809	13	4.3	13	79	15	60	61	0	0	38	0.96
47908774--47908813	11	3.5	11	87	12	62	67	0	0	32	0.91
47908766--47908813	24	2.0	24	92	8	80	64	0	0	35	0.94
47910146--47910171	12	2.2	12	100	0	52	30	7	0	61	1.24
47911604--47911657	25	2.2	24	83	3	63	42	9	11	37	1.73
47911615--47911667	24	2.2	25	83	10	65	45	5	11	37	1.64
47912203--47912236	16	2.1	16	88	0	50	50	14	17	17	1.79
47915012--47915052	21	2.0	21	90	0	64	29	21	29	19	1.98
47916958--47916991	16	2.1	16	88	0	50	50	14	17	17	1.79
47930315--47930354	16	2.5	16	95	0	71	35	35	5	25	1.78
47931003--47931061	17	3.4	17	79	6	66	52	1	0	45	1.10
47937524--47937638	60	1.9	60	82	3	142	33	9	14	41	1.79
47947780--47948001	27	8.2	27	88	2	329	43	19	19	17	1.89
47970517--47970543	14	1.9	14	100	0	54	51	7	11	29	1.64
47985617--47985650	16	2.2	15	89	5	50	55	0	0	44	0.99
47993903--47994146	122	2.0	122	97	0	461	23	15	18	42	1.89
47997200--47997243	23	2.0	21	82	13	52	68	9	4	18	1.34
47997423--47997500	9	8.6	9	75	17	72	65	1	1	32	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47997427--47997530	29	3.6	28	76	17	90	62	2	0	33	1.16
47997437--47997547	29	4.0	26	72	15	80	63	2	0	33	1.15
47997424--47997560	10	14.6	9	71	17	61	63	2	0	32	1.14
47997569--47997608	21	1.9	21	85	10	55	62	2	2	32	1.22
47998326--47998369	16	2.8	15	86	6	52	45	4	4	45	1.44
47999320--47999351	15	2.1	15	94	0	55	15	0	15	68	1.21
48002777--48002902	61	2.1	61	89	3	191	19	28	19	32	1.96
48011045--48011096	20	2.7	20	87	3	61	44	0	1	53	1.11
48011053--48011096	20	2.2	20	91	0	70	43	0	2	54	1.12
48014264--48014290	14	1.9	14	100	0	54	40	0	7	51	1.30
48015369--48015555	49	3.6	50	81	8	207	24	27	19	28	1.98
48029301--48029338	20	2.0	20	84	5	51	10	2	10	76	1.12
48029922--48029968	18	2.5	18	82	6	58	40	8	29	21	1.83
48040192--48040462	113	2.4	113	84	2	328	30	18	21	29	1.97
48040192--48040496	113	2.7	114	81	3	319	31	18	20	30	1.96
48040788--48040840	14	3.8	14	82	0	61	24	0	28	47	1.52
48041196--48041220	13	1.9	13	100	0	50	48	0	4	48	1.20
48041262--48041502	43	5.6	43	88	1	340	24	17	28	29	1.97
48041262--48041499	85	2.8	86	85	3	327	24	17	28	28	1.97
48042444--48042906	154	3.0	154	91	2	763	43	15	10	30	1.80
48042444--48042900	150	3.0	152	92	1	747	43	15	10	30	1.81
48045567--48045593	12	2.2	12	100	0	54	66	7	0	25	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48049641--48049673	17	1.9	17	88	11	50	54	0	3	42	1.15
48050240--48050267	14	2.0	14	100	0	56	64	14	0	21	1.29
48050882--48050916	14	2.5	14	95	0	61	31	14	0	54	1.40
48056007--48057378	344	4.0	344	99	0	2698	33	8	18	38	1.81
48062808--48062852	20	2.2	20	96	0	81	40	17	6	35	1.76
48062815--48062867	20	2.6	20	85	8	63	45	18	7	28	1.77
48076677--48076869	45	4.3	45	77	5	183	38	16	17	28	1.91
48076724--48076889	45	3.7	45	79	3	120	39	14	16	30	1.88
48077317--48077346	14	2.2	13	94	5	51	53	13	0	33	1.40
48091078--48091116	20	2.1	19	85	9	53	30	5	12	51	1.62
48094276--48094334	31	1.9	31	96	0	109	64	3	0	32	1.10
48094682--48094716	14	2.5	13	86	13	52	51	14	0	34	1.42
48110427--48110469	22	2.0	22	90	0	68	34	2	16	46	1.60
48114161--48114203	22	2.0	22	90	0	68	34	2	16	46	1.60
48121439--48121492	18	3.0	18	91	0	90	40	20	14	24	1.90
48124077--48124181	52	2.0	51	100	0	174	28	3	18	49	1.64
48129563--48129909	23	15.0	23	86	1	469	41	20	11	26	1.86
48129564--48129913	116	3.0	115	91	1	529	41	20	11	26	1.86
48138307--48138670	23	15.6	23	81	4	399	41	19	12	27	1.87
48138307--48138670	70	5.2	69	82	4	399	41	19	12	27	1.87
48145458--48145578	60	2.0	60	100	0	242	28	14	19	38	1.91
48147617--48147680	9	7.1	9	76	13	51	56	1	0	42	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48147683--48147739	29	1.9	29	86	10	80	61	1	1	35	1.17
48147681--48147739	25	2.5	24	81	10	59	61	1	1	35	1.16
48150558--48150631	16	4.6	16	71	6	60	27	25	16	31	1.96
48150558--48150663	48	2.2	48	81	0	122	27	24	17	30	1.98
48150753--48150999	76	3.3	75	86	5	365	33	20	10	36	1.87
48150969--48151028	18	3.3	18	86	9	86	31	20	10	38	1.85
48159664--48159695	15	2.1	15	100	0	64	62	12	6	18	1.50
48164920--48164944	12	2.1	12	100	0	50	24	0	0	76	0.80
48171165--48171207	15	2.9	15	85	0	50	76	0	11	11	1.02
48171741--48171793	28	1.9	27	85	11	72	28	18	3	49	1.65
48172135--48172188	19	2.8	19	97	0	99	38	11	16	33	1.84
48172135--48172211	19	3.7	22	87	6	76	38	9	16	35	1.81
48173051--48173300	24	10.7	24	70	15	148	34	6	4	55	1.46
48173049--48173216	70	2.4	69	78	9	180	32	6	4	55	1.46
48173010--48173291	69	4.1	68	74	14	206	34	6	4	54	1.47
48173349--48173393	23	2.0	23	90	0	72	31	6	4	57	1.44
48186429--48186508	16	4.9	17	72	7	60	71	1	21	6	1.15
48186432--48186512	42	1.9	42	82	5	101	69	1	23	6	1.19
48193297--48193321	13	1.9	13	100	0	50	32	20	16	32	1.94
48193869--48194046	27	6.6	26	82	6	169	26	15	28	28	1.96
48193870--48194025	82	1.9	81	86	3	224	26	16	28	28	1.97
48201563--48201587	13	1.9	13	100	0	50	32	20	16	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48202137--48202314	27	6.6	26	82	6	169	26	15	28	28	1.96
48202138--48202293	82	1.9	81	86	3	224	26	16	28	28	1.97
48207218--48207267	24	2.0	26	84	7	68	10	4	22	64	1.41
48228946--48228974	12	2.3	13	94	5	51	65	6	6	20	1.40
48232952--48232992	20	2.0	20	100	0	82	34	14	26	24	1.94
48252931--48252987	21	2.7	21	89	5	80	28	22	19	29	1.98
48256324--48256508	79	2.3	82	83	7	229	24	27	22	24	2.00
48256305--48256508	40	5.1	40	81	8	229	24	27	22	25	2.00
48279301--48279336	17	2.0	17	89	10	54	50	19	2	27	1.62
48280858--48280928	35	2.0	35	97	0	133	59	0	2	38	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240