genome.fa.s24.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  139  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43283283--43283558	54	5.1	54	78	3	227	19	19	21	39	1.93
43283284--43283558	81	3.4	81	82	4	261	19	20	21	39	1.93
43285236--43285338	26	4.0	26	78	5	102	38	20	20	20	1.93
43285239--43285338	52	1.9	52	84	8	132	40	20	20	20	1.92
43285486--43285602	54	2.2	54	90	3	182	21	18	18	41	1.91
43285477--43285590	27	4.2	27	85	0	156	22	19	20	37	1.94
43287191--43287251	28	2.2	28	94	2	106	27	24	24	22	2.00
43287612--43287889	27	10.3	27	85	1	335	18	20	21	39	1.92
43290033--43290274	50	4.8	50	92	1	378	20	30	22	26	1.98
43297134--43297173	21	1.9	21	89	0	62	70	10	5	15	1.32
43311529--43311575	24	1.9	25	91	4	78	55	0	6	38	1.26
43314431--43314489	23	2.5	25	75	10	70	52	8	6	32	1.58
43316269--43316599	44	7.6	45	72	9	148	27	25	19	27	1.99
43316232--43316639	217	1.9	217	85	4	520	27	24	19	28	1.98
43316274--43316698	173	2.5	173	85	3	536	27	24	18	28	1.98
43316694--43317121	128	3.3	128	91	1	707	24	23	19	32	1.98
43318237--43318448	41	5.2	41	88	0	298	19	21	26	31	1.98
43323057--43323244	43	4.4	43	91	0	277	27	30	18	23	1.98
43325686--43325711	9	2.9	9	100	0	52	23	30	11	34	1.90
43326676--43326735	21	2.9	21	82	5	59	35	41	0	23	1.55
43327021--43327063	14	3.1	14	86	0	59	44	37	0	18	1.50
43327802--43328075	41	6.7	41	89	4	376	31	29	21	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43328132--43328248	40	2.9	41	78	3	123	24	21	18	35	1.96
43328457--43328516	18	3.4	18	64	13	52	43	6	10	40	1.64
43329243--43329276	7	5.0	7	92	7	61	14	14	0	70	1.17
43330162--43330190	14	2.0	15	93	6	51	0	20	0	79	0.74
43342946--43343037	25	3.7	25	78	11	91	29	23	22	23	1.99
43346587--43346625	20	2.0	20	84	0	51	17	2	23	56	1.53
43347725--43347762	19	2.0	19	89	0	58	63	13	2	21	1.42
43347948--43347990	22	2.0	22	90	0	68	32	18	16	32	1.93
43352605--43352646	11	4.0	11	84	6	52	35	0	0	64	0.94
43359724--43360344	27	23.1	27	84	2	655	36	20	20	23	1.95
43360415--43360466	24	2.2	24	89	6	79	19	7	25	48	1.75
43360592--43360647	26	2.2	26	83	0	67	14	21	30	33	1.93
43360638--43360869	32	7.3	32	78	5	195	21	18	21	38	1.93
43360635--43360858	64	3.5	64	83	6	283	20	19	21	38	1.94
43361933--43362099	43	3.9	41	73	12	122	29	28	17	23	1.97
43369338--43369522	79	2.3	81	83	7	227	24	22	27	24	2.00
43369339--43369522	40	4.6	40	82	9	207	25	22	27	24	2.00
43369391--43369555	79	2.1	79	83	6	201	26	21	27	24	1.99
43380777--43380809	1	33.0	1	93	0	57	0	3	0	96	0.20
43382451--43382574	59	2.1	59	93	0	212	9	17	28	44	1.80
43382923--43382982	18	3.3	18	73	0	66	28	11	30	30	1.92
43382931--43382990	27	2.2	28	82	8	79	30	11	30	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43382931--43382990	9	6.7	9	75	7	50	30	11	30	28	1.92
43382991--43383061	36	2.0	36	94	0	124	32	30	9	26	1.89
43388791--43388830	18	2.2	17	86	8	53	32	15	10	42	1.79
43392151--43392180	10	3.0	10	95	0	51	10	0	33	56	1.32
43397507--43397533	13	2.1	13	100	0	54	29	7	22	40	1.81
43404486--43404670	95	1.9	96	86	3	266	33	15	18	31	1.93
43406520--43406698	93	1.9	94	90	1	288	27	10	10	51	1.68
43408832--43408932	20	5.1	20	77	4	96	14	27	17	39	1.89
43409606--43409655	23	2.3	23	86	6	68	26	8	12	54	1.64
43421585--43421627	21	2.0	21	86	0	59	55	4	0	39	1.20
43435160--43435283	59	2.1	59	93	0	212	9	17	28	44	1.80
43435633--43435692	18	3.3	18	73	0	66	28	11	30	30	1.92
43435641--43435700	27	2.2	28	82	8	79	30	11	30	28	1.92
43435641--43435700	9	6.7	9	75	7	50	30	11	30	28	1.92
43435701--43435771	36	2.0	36	94	0	124	32	30	9	26	1.89
43441515--43441554	18	2.2	17	86	8	53	32	15	10	42	1.79
43444872--43444901	10	3.0	10	95	0	51	10	0	33	56	1.32
43450204--43450230	13	2.1	13	100	0	54	29	7	22	40	1.81
43457141--43457325	95	1.9	96	86	3	266	33	15	18	31	1.93
43459164--43459341	93	1.9	93	89	2	277	28	10	10	51	1.69
43461468--43461568	20	5.1	20	77	4	96	14	27	17	39	1.89
43462240--43462289	23	2.3	23	86	6	68	26	8	12	54	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43472727--43472788	27	2.3	27	85	0	79	38	17	25	17	1.92
43474360--43474402	21	2.0	21	86	0	59	55	4	0	39	1.20
43475735--43475925	45	4.3	45	89	3	282	25	47	7	19	1.75
43475761--43475877	21	5.3	21	63	18	58	27	47	6	18	1.74
43475760--43475877	24	5.2	24	59	15	61	27	47	6	18	1.74
43475827--43475901	24	3.2	24	66	21	61	21	50	8	20	1.73
43476191--43476260	16	4.4	16	96	0	104	31	0	35	32	1.58
43476239--43476348	45	2.6	43	77	9	120	33	5	28	32	1.80
43476494--43476528	18	2.0	17	88	5	52	54	0	0	45	0.99
43476472--43477000	120	4.4	120	94	1	893	51	3	0	43	1.26
43476824--43476981	26	6.5	26	65	22	83	53	2	0	43	1.19
43476731--43476884	18	8.9	18	66	18	76	54	2	0	42	1.19
43476472--43477000	237	2.2	239	92	2	882	51	3	0	43	1.26
43495236--43495304	22	3.1	22	82	0	84	17	20	17	44	1.86
43495636--43495830	51	3.9	49	82	4	221	24	17	28	29	1.97
43495743--43495824	26	3.2	26	63	27	66	24	14	29	31	1.95
43495645--43495830	102	1.8	101	89	3	293	24	17	27	30	1.97
43504441--43504485	23	2.0	23	83	8	58	15	22	40	22	1.91
43504606--43504676	37	1.9	37	82	5	90	38	2	2	56	1.29
43506894--43506931	11	3.4	11	88	3	58	39	5	0	55	1.23
43507174--43507312	46	3.0	45	91	6	217	35	10	25	28	1.88
43512090--43512545	47	9.6	47	91	2	714	28	29	8	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43512090--43512545	96	4.8	96	94	1	803	28	29	8	33	1.86
43512090--43512545	143	3.2	141	90	3	714	28	29	8	33	1.86
43515476--43515528	26	2.0	26	100	0	106	22	20	11	45	1.83
43515681--43515710	12	2.5	12	88	0	51	70	13	13	3	1.30
43524391--43524518	36	3.5	35	78	10	132	22	10	14	52	1.72
43524365--43524625	72	3.6	71	76	9	208	24	15	13	46	1.82
43524500--43524623	36	3.5	36	77	11	105	25	16	14	44	1.85
43524426--43524653	110	2.1	105	80	8	242	25	14	14	46	1.82
43524918--43524983	31	2.1	31	97	0	123	60	6	12	21	1.53
43530637--43530661	12	2.1	12	100	0	50	40	0	24	36	1.55
43532573--43532636	25	2.4	27	87	10	87	39	9	0	51	1.34
43533251--43533346	19	5.2	19	81	5	124	37	13	0	48	1.43
43533251--43533346	37	2.6	37	98	0	183	37	13	0	48	1.43
43533415--43533571	82	1.9	82	100	0	314	39	5	10	44	1.62
43533663--43533726	19	3.4	19	78	4	85	51	1	10	35	1.47
43534089--43534151	28	2.2	28	94	0	108	49	0	7	42	1.32
43543440--43543502	7	8.6	7	79	10	72	19	0	34	46	1.50
43543444--43543500	22	2.5	22	88	2	78	17	0	35	47	1.48
43543521--43543595	28	2.6	28	83	6	89	45	25	0	29	1.54
43543517--43543591	7	10.6	7	73	8	62	45	26	0	28	1.54
43545461--43545506	23	2.0	23	100	0	92	60	0	4	34	1.16
43545956--43546011	27	2.1	27	86	0	76	39	0	41	19	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43546185--43546326	43	3.3	42	83	4	169	11	19	16	52	1.73
43546185--43546326	42	3.3	42	82	6	153	11	19	16	52	1.73
43548390--43548547	78	2.0	78	97	0	298	37	15	17	29	1.91
43549036--43549075	14	2.9	14	88	7	55	62	0	12	25	1.30
43549036--43549075	13	2.9	15	82	14	50	62	0	12	25	1.30
43555457--43555543	40	2.1	41	87	2	131	44	10	11	33	1.74
43559509--43559709	68	3.0	68	75	2	188	34	17	20	26	1.96
43567335--43567367	17	1.9	17	88	11	50	27	57	3	12	1.49
43568385--43568415	15	2.1	15	93	0	53	70	0	9	19	1.14
43578216--43578277	20	3.2	20	75	13	67	53	1	0	45	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240