genome.fa.s24.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  111  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34503044--34503107	32	2.0	32	100	0	128	31	9	28	31	1.88
34505921--34505954	17	2.0	17	88	11	52	44	11	0	44	1.40
34508333--34508601	43	6.3	43	84	1	324	25	29	18	26	1.98
34509246--34509305	17	3.5	17	80	8	68	38	1	15	45	1.56
34509249--34509305	9	6.8	8	80	7	60	35	1	15	47	1.56
34509249--34509334	17	4.8	17	73	16	66	36	1	15	47	1.53
34510041--34510087	21	2.2	21	84	0	58	46	0	12	40	1.42
34511784--34511843	31	1.9	31	96	0	111	33	23	15	28	1.94
34513354--34513651	109	2.8	103	87	5	402	25	12	11	51	1.71
34513555--34514221	146	4.6	147	95	1	1180	25	15	13	45	1.82
34514358--34514391	14	2.4	14	90	0	50	32	41	0	26	1.56
34514383--34514417	8	4.5	8	85	7	54	40	48	0	11	1.39
34514369--34514417	23	2.2	22	89	10	73	38	46	0	14	1.44
34514848--34514902	25	2.2	25	75	12	60	21	9	7	61	1.50
34515979--34516027	3	16.3	3	86	0	71	30	2	4	63	1.24
34518530--34518563	9	3.8	9	92	0	50	44	0	47	8	1.34
34520071--34520127	17	3.3	17	80	11	55	71	5	3	19	1.19
34521067--34521136	7	10.0	7	90	4	106	72	0	12	14	1.11
34522290--34524295	88	22.8	88	82	2	2361	28	19	23	28	1.98
34522306--34524295	439	4.5	439	86	2	2539	28	19	23	28	1.98
34524373--34524403	3	10.3	3	92	0	53	32	3	0	64	1.09
34524375--34524404	15	2.0	15	100	0	60	33	6	0	60	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34533996--34534041	15	3.1	15	84	6	58	15	10	8	65	1.47
34534405--34534434	13	2.3	13	94	0	51	50	26	10	13	1.73
34539258--34539349	45	2.0	45	95	0	166	27	15	29	28	1.96
34542800--34544013	613	2.0	613	93	0	2061	29	15	19	36	1.92
34545206--34545239	16	2.2	15	89	5	50	52	2	2	41	1.31
34558063--34558092	15	2.0	15	93	0	51	66	16	13	3	1.37
34571833--34571950	33	3.5	33	83	4	148	13	8	36	41	1.75
34574414--34574438	10	2.5	10	100	0	50	20	0	8	72	1.10
34593187--34593231	22	2.2	20	88	8	63	66	0	13	20	1.24
34594448--34595026	132	4.4	132	85	2	734	31	20	24	23	1.98
34594642--34594728	44	2.0	44	83	0	111	37	13	22	25	1.91
34594480--34595106	264	2.4	264	82	5	644	31	19	23	24	1.98
34595152--34595269	44	2.7	44	89	0	173	29	21	22	27	1.99
34595030--34595317	44	6.7	44	72	13	154	31	18	21	28	1.97
34595368--34595727	50	7.2	50	67	8	214	34	23	18	23	1.96
34595338--34595732	100	4.0	100	86	2	506	33	24	18	23	1.97
34596276--34596337	25	2.5	25	80	12	83	77	4	17	0	0.94
34600038--34600115	24	3.2	23	75	8	66	35	17	29	16	1.93
34600396--34600629	115	2.0	115	97	0	441	34	18	14	32	1.91
34601702--34602302	259	2.3	259	91	1	974	38	10	15	36	1.81
34608803--34608899	42	2.3	42	80	1	113	32	25	15	25	1.95
34620980--34621244	40	6.7	40	86	5	279	26	27	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34621176--34621253	40	1.9	41	82	10	97	26	28	20	24	1.99
34628692--34628888	96	2.1	96	98	0	376	35	3	8	53	1.48
34635409--34635458	19	2.6	19	75	15	57	60	2	0	38	1.09
34639878--34639917	14	2.9	14	84	0	53	32	7	17	42	1.77
34641289--34641356	27	2.5	28	80	7	77	52	20	4	22	1.63
34646015--34646078	20	3.2	20	71	8	67	45	6	34	14	1.70
34647594--34647645	16	3.2	16	86	0	77	40	7	23	28	1.82
34652606--34652701	47	2.0	47	100	0	192	47	6	4	41	1.48
34658625--34658699	29	2.6	29	84	0	96	25	14	21	38	1.91
34658961--34659056	51	1.9	50	97	2	183	34	4	19	41	1.71
34662106--34662213	20	5.4	20	73	8	85	37	20	29	12	1.89
34662101--34662222	40	3.0	40	71	13	124	38	18	27	15	1.91
34664133--34664308	40	4.3	40	73	11	142	23	13	28	34	1.93
34668993--34669055	29	2.2	29	88	0	90	39	12	22	25	1.89
34671506--34671597	40	2.3	40	87	7	125	22	16	28	32	1.96
34677866--34679844	539	3.6	538	94	3	3474	35	19	11	33	1.88
34678405--34679844	554	2.6	556	98	0	2758	35	19	10	34	1.87
34680049--34680265	51	4.3	51	89	4	314	28	23	15	32	1.95
34694907--34695211	152	2.0	152	100	0	610	42	19	9	28	1.83
34696512--34696576	24	2.7	24	78	4	69	21	13	24	40	1.90
34697369--34697429	31	2.0	31	100	0	122	40	6	19	32	1.77
34702160--34702229	30	2.3	30	82	0	95	27	25	12	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34703465--34703531	30	2.2	30	89	0	98	32	16	25	25	1.96
34704298--34704569	125	2.2	125	88	4	406	30	15	21	32	1.95
34707765--34707797	16	2.0	17	88	5	50	36	0	9	54	1.32
34707815--34707861	24	2.0	24	91	4	78	36	2	23	38	1.67
34707777--34707945	29	5.8	29	89	0	248	32	1	23	43	1.61
34708778--34708816	7	5.6	7	100	0	78	58	12	0	28	1.34
34709774--34709807	15	2.3	15	90	5	52	67	5	0	26	1.13
34709995--34710045	22	2.3	21	83	9	66	33	0	33	33	1.58
34710050--34710100	22	2.3	22	100	0	102	47	0	31	21	1.51
34715087--34715178	42	2.2	42	82	3	105	16	39	20	23	1.92
34722786--34722887	41	2.5	41	90	3	152	27	19	25	27	1.99
34730310--34730411	41	2.5	41	87	3	143	27	18	25	28	1.98
34731426--34731451	13	2.0	13	100	0	52	53	0	15	30	1.42
34733724--34733780	14	4.1	14	82	8	62	49	24	0	26	1.51
34734045--34734083	20	2.0	20	84	0	51	64	5	7	23	1.40
34734092--34734319	41	5.6	40	80	9	264	29	22	18	29	1.98
34734089--34734314	81	2.8	81	82	4	301	28	22	19	29	1.98
34743566--34743799	21	11.1	21	68	7	107	14	18	17	49	1.80
34743561--34743804	42	5.8	42	85	0	301	14	19	17	48	1.81
34758206--34758260	16	3.4	16	75	5	56	25	41	5	27	1.77
34758203--34758270	33	2.1	33	91	0	109	22	44	5	27	1.76
34770411--34770512	41	2.5	41	90	3	152	27	19	25	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34772146--34772222	38	2.0	38	94	0	136	46	16	16	19	1.84
34773705--34773794	45	2.0	46	89	6	139	28	6	0	64	1.19
34773722--34773820	45	2.2	45	82	12	114	26	8	2	63	1.33
34788548--34788737	104	1.8	105	91	2	321	46	10	11	31	1.74
34798953--34799072	27	4.5	26	75	13	82	33	19	23	24	1.97
34798987--34799103	54	2.2	54	80	6	137	31	17	23	26	1.97
34798973--34799099	27	4.7	27	77	3	105	33	18	23	24	1.96
34800391--34800562	28	6.1	28	78	1	175	31	18	18	30	1.95
34800404--34800567	84	2.0	84	85	2	222	32	18	17	31	1.94
34804847--34805204	112	3.2	112	89	0	536	34	14	24	26	1.94
34809580--34809657	28	2.8	28	86	3	104	34	15	17	32	1.92
34812354--34812379	9	2.9	9	100	0	52	30	11	11	46	1.76
34812372--34812410	20	2.0	20	94	0	69	15	17	12	53	1.72
34812375--34812421	20	2.3	20	85	0	58	12	21	14	51	1.76
34824203--34824377	37	4.8	37	94	1	289	39	13	21	25	1.90
34824203--34824378	73	2.4	74	92	1	291	39	13	21	26	1.90
34824340--34824462	45	2.8	45	88	6	189	33	16	22	27	1.95
34831896--34832071	37	4.8	37	92	2	273	39	13	21	26	1.89
34832034--34832157	46	2.8	46	91	3	200	33	16	22	27	1.96
34845880--34845906	5	5.4	5	100	0	54	40	0	0	59	0.98
34850425--34850458	5	6.6	5	93	6	59	64	0	17	17	1.29
34850424--34850461	11	3.5	11	92	7	69	63	0	18	18	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34850445--34850574	57	2.3	58	86	2	183	49	6	18	25	1.72
34853481--34853781	163	1.8	163	92	0	503	41	23	4	30	1.75
34854354--34854401	20	2.5	19	80	9	53	29	0	12	58	1.35
34860553--34860620	35	1.9	35	96	0	127	51	2	16	29	1.59
34864046--34864084	20	2.0	20	100	0	78	58	5	15	20	1.55
34864035--34864084	12	4.5	12	78	19	63	58	6	14	22	1.58
34872434--34872510	36	2.2	35	80	2	82	27	9	25	37	1.86
34878443--34878481	18	2.2	18	85	0	51	33	0	38	28	1.57
34879285--34879321	18	2.0	19	89	5	58	5	43	0	51	1.24
34886114--34886156	19	2.3	19	84	15	54	46	0	23	30	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240