genome.fa.s24.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  163  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51028134--51028454	50	6.4	50	70	4	225	25	24	20	29	1.99
51028111--51028469	100	3.6	101	87	3	548	26	23	21	28	1.99
51029703--51029746	7	6.3	7	80	19	56	15	18	0	65	1.27
51029712--51029758	21	2.2	21	77	7	51	14	19	0	65	1.26
51035433--51035463	11	2.8	11	95	0	53	77	3	6	12	1.08
51041479--51041513	15	2.3	15	95	0	61	65	11	0	22	1.24
51046582--51046616	14	2.4	15	90	4	54	51	5	0	42	1.25
51047396--51047442	19	2.6	18	93	3	76	74	4	0	21	0.99
51050256--51050295	3	13.3	3	100	0	80	32	0	0	67	0.91
51058665--51058711	11	4.3	11	76	10	51	72	8	0	19	1.10
51060175--51060262	43	2.0	43	91	4	142	31	13	14	39	1.85
51068226--51068268	21	2.0	21	82	8	52	46	6	2	44	1.43
51068378--51068486	41	2.7	41	81	8	132	32	21	19	27	1.97
51073345--51073389	23	2.0	22	82	4	54	35	13	20	31	1.91
51073551--51073628	29	2.8	29	84	3	106	24	17	28	29	1.98
51073556--51073628	14	5.1	14	73	3	65	21	19	30	28	1.98
51073694--51073727	15	2.3	15	94	0	59	32	23	20	23	1.98
51082431--51082468	20	1.9	20	88	0	58	26	2	5	65	1.27
51082594--51082905	86	3.7	85	85	3	362	31	11	11	45	1.77
51082610--51082941	86	4.0	80	83	6	278	30	12	11	46	1.76
51082698--51082941	85	3.0	81	82	7	255	31	12	11	45	1.76
51083835--51084084	28	9.0	28	79	10	244	25	15	5	54	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51083879--51084081	84	2.4	83	87	7	279	25	14	4	55	1.59
51083879--51084089	55	3.8	55	79	10	207	25	15	4	54	1.60
51084562--51084685	45	2.7	45	87	3	169	24	20	15	40	1.90
51100880--51101073	51	3.8	52	79	9	204	24	16	29	29	1.97
51101082--51101422	42	8.1	42	80	9	381	20	16	26	36	1.94
51101082--51101377	84	3.5	84	96	0	538	20	15	25	37	1.93
51112228--51112269	22	1.9	22	85	0	57	19	9	23	47	1.78
51115052--51115166	19	5.8	19	83	7	140	39	6	13	40	1.72
51115764--51115842	22	3.5	23	75	16	76	30	2	3	63	1.25
51121060--51121170	19	5.8	19	89	0	168	40	9	12	37	1.75
51121067--51121170	38	2.7	38	96	0	190	41	8	11	38	1.72
51121060--51121196	19	6.9	21	85	4	105	39	8	13	38	1.75
51121377--51121529	75	2.0	75	100	0	306	28	10	14	46	1.77
51121872--51121950	22	3.5	23	75	16	76	30	2	3	63	1.25
51127324--51127349	3	8.7	3	100	0	52	30	0	0	69	0.89
51130509--51130535	1	27.0	1	100	0	54	100	0	0	0	0.00
51140468--51140510	21	2.0	22	86	4	61	48	4	2	44	1.36
51148719--51148808	27	3.4	27	78	1	74	37	24	17	20	1.93
51151871--51152210	172	2.0	171	93	0	581	47	16	12	23	1.80
51152683--51152720	19	2.0	20	89	5	60	60	5	5	28	1.40
51157260--51157316	28	2.0	28	96	0	105	33	10	14	42	1.79
51163720--51163777	7	8.3	7	81	7	64	20	0	29	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51163720--51163791	28	2.6	27	84	8	90	18	1	30	50	1.55
51163738--51163798	28	2.2	28	87	0	86	14	3	36	45	1.62
51169665--51169703	16	2.5	15	80	12	51	66	5	2	25	1.25
51169863--51169902	20	2.0	20	95	0	71	32	15	10	42	1.79
51171066--51171113	20	2.3	20	82	3	60	60	4	6	29	1.40
51177571--51177627	23	2.5	23	97	0	105	31	15	28	24	1.96
51183456--51183490	16	2.1	18	89	10	56	40	22	0	37	1.55
51184383--51184522	41	3.5	40	71	4	129	41	16	20	21	1.90
51184383--51184541	81	2.0	82	83	3	205	41	18	19	20	1.91
51184873--51184903	2	15.5	2	100	0	62	51	0	48	0	1.00
51186210--51186249	20	2.0	20	95	0	71	7	10	27	55	1.60
51188889--51189003	43	2.7	42	74	8	106	26	25	20	28	1.99
51189340--51189380	20	2.1	19	86	4	55	17	12	19	51	1.76
51190277--51190316	21	1.9	21	94	0	71	42	0	55	2	1.13
51190280--51190317	12	3.2	12	88	0	58	44	0	52	2	1.14
51201857--51201918	26	2.4	26	83	5	81	41	12	11	33	1.79
51205332--51205460	63	2.0	63	89	2	197	35	13	13	37	1.84
51205831--51205855	12	2.1	12	100	0	50	32	0	16	52	1.44
51207148--51207269	23	5.3	23	87	3	174	30	27	21	21	1.98
51207148--51207267	46	2.6	46	93	0	195	30	27	21	20	1.98
51209229--51209293	16	4.1	16	83	0	94	26	27	4	41	1.75
51209226--51209291	32	2.1	32	91	0	105	28	27	3	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51217948--51218010	25	2.5	26	75	7	69	31	20	23	23	1.98
51226885--51227254	137	2.7	136	85	1	443	29	24	19	27	1.98
51227437--51227562	17	7.4	17	80	5	137	36	12	13	37	1.83
51227454--51227558	52	2.0	53	84	1	140	39	11	12	37	1.79
51232590--51232635	24	1.9	24	100	0	92	45	8	15	30	1.76
51233467--51233522	27	2.1	27	100	0	112	55	25	10	8	1.63
51233816--51233854	20	2.0	20	85	10	53	20	7	28	43	1.79
51238090--51238343	27	9.4	27	80	7	250	43	17	21	18	1.88
51238529--51238587	26	2.2	26	82	8	66	16	25	20	37	1.93
51238543--51238593	26	2.0	26	96	0	93	13	23	25	37	1.92
51238691--51238796	28	3.3	32	76	20	105	21	22	25	30	1.99
51245826--51245929	48	2.1	50	78	7	115	52	3	2	40	1.34
51250478--51250506	6	4.8	6	100	0	58	34	34	0	31	1.58
51252541--51252566	12	2.2	12	100	0	52	7	15	30	46	1.74
51256717--51256790	11	6.9	11	74	10	64	35	2	0	62	1.10
51256697--51256783	43	2.0	43	81	2	102	39	2	0	58	1.11
51256702--51256790	22	4.1	22	71	11	76	37	2	0	60	1.09
51260325--51260352	13	2.2	13	100	0	56	21	7	21	50	1.72
51260566--51260600	18	1.9	18	100	0	70	62	2	0	34	1.10
51260563--51260637	26	3.0	26	84	7	66	58	1	0	40	1.06
51260597--51260640	12	3.5	12	76	11	52	50	0	0	50	1.00
51260587--51260639	26	2.0	26	100	0	106	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51260613--51260886	138	2.0	138	94	1	487	48	5	7	38	1.53
51261194--51261233	20	2.0	20	100	0	80	20	15	5	60	1.53
51262851--51262953	49	2.1	48	87	1	143	31	7	11	49	1.67
51264389--51264464	28	2.9	27	75	7	75	42	0	2	55	1.14
51264501--51264530	15	1.9	16	93	6	53	50	0	6	43	1.28
51264546--51264602	26	2.1	28	87	9	82	43	0	1	54	1.10
51264341--51265055	120	6.0	120	95	1	1262	42	0	4	52	1.29
51264763--51264798	18	2.1	17	90	10	56	36	2	0	61	1.11
51264786--51264835	26	2.0	25	92	4	82	40	0	0	60	0.97
51264341--51265055	239	3.0	240	94	1	1262	42	0	4	52	1.29
51264341--51265055	359	2.0	355	95	1	1270	42	0	4	52	1.29
51265275--51265322	16	3.0	16	96	0	87	25	33	4	37	1.75
51269715--51269805	44	2.1	44	91	0	146	46	10	13	29	1.77
51272134--51272696	114	4.9	112	73	12	367	30	18	23	28	1.97
51272131--51272696	229	2.5	228	80	8	587	30	18	22	28	1.97
51273038--51273092	22	2.6	21	88	2	74	18	0	36	45	1.49
51273464--51273499	14	2.3	17	86	13	51	55	0	2	41	1.14
51274265--51274351	44	2.0	44	86	8	124	26	28	11	33	1.91
51275991--51276071	35	2.3	35	95	0	144	33	4	3	58	1.37
51276090--51276145	16	3.3	17	80	9	78	37	16	3	42	1.65
51276095--51276167	34	2.3	33	86	11	100	41	16	2	39	1.63
51276213--51276413	24	9.3	22	68	21	74	48	18	1	31	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51276344--51276397	12	4.7	11	80	13	56	51	14	1	31	1.53
51276330--51276414	24	4.0	22	81	11	88	52	17	1	28	1.52
51276355--51276414	12	5.7	10	88	5	68	55	15	0	30	1.41
51276420--51276563	34	4.5	33	66	17	86	52	18	2	26	1.56
51276367--51276629	95	2.8	95	87	3	397	52	17	1	27	1.55
51276549--51276588	12	3.3	12	100	0	80	52	15	0	32	1.43
51276660--51276726	19	3.7	19	79	18	88	50	17	1	29	1.55
51276660--51276760	9	11.4	9	71	19	72	48	18	1	30	1.59
51276691--51276771	16	4.9	16	76	11	76	48	18	3	29	1.65
51276695--51276771	25	3.1	25	84	0	118	46	19	3	29	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240