genome.fa.s24.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  161  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50552909--50552990	7	11.9	7	73	6	51	20	2	30	46	1.64
50552909--50552961	21	2.5	20	82	14	63	18	3	30	47	1.67
50553447--50553677	115	2.0	115	92	1	383	28	18	20	32	1.96
50554942--50554990	21	2.3	21	82	0	62	36	16	40	6	1.73
50554955--50555012	21	2.8	21	83	0	71	32	15	44	6	1.73
50555336--50555502	42	3.9	43	84	4	171	26	19	20	33	1.96
50555516--50555545	15	2.0	15	93	0	51	13	23	23	40	1.90
50557010--50557101	19	4.8	19	65	13	55	25	4	4	66	1.29
50557097--50557148	19	2.7	19	75	0	59	28	7	0	63	1.22
50557140--50557186	18	2.5	19	80	13	53	27	4	2	65	1.22
50557154--50557245	40	2.3	41	80	14	102	38	2	2	57	1.23
50557366--50557395	15	1.9	16	93	6	53	83	0	16	0	0.65
50561258--50561325	35	1.9	35	81	0	82	44	23	7	25	1.79
50563833--50563863	2	15.5	2	100	0	62	0	48	0	51	1.00
50567764--50567846	35	2.4	35	93	0	139	13	10	30	45	1.77
50578455--50578619	43	3.8	44	83	12	175	25	16	26	31	1.96
50578450--50578619	86	2.0	85	83	11	213	25	16	25	31	1.96
50586458--50586604	43	3.4	43	85	8	149	25	17	25	31	1.97
50594745--50594869	47	2.7	47	89	0	178	28	32	8	31	1.86
50594848--50594891	22	2.0	22	100	0	88	31	36	0	31	1.58
50594754--50594987	116	2.0	117	91	1	380	29	32	7	31	1.85
50594801--50594938	69	2.0	69	100	0	276	30	31	5	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50594869--50595114	49	5.1	49	94	1	424	29	30	8	32	1.86
50599335--50599382	23	2.1	23	92	7	80	54	14	20	10	1.70
50602195--50602369	30	5.9	30	71	14	116	32	21	3	42	1.70
50602631--50602695	34	1.9	34	84	12	89	21	53	13	10	1.70
50602630--50602699	17	4.1	18	75	10	60	21	55	12	10	1.66
50602884--50602940	23	2.5	24	86	11	75	78	0	21	0	0.74
50602884--50602930	13	3.8	13	83	13	64	78	0	21	0	0.75
50602882--50602941	13	4.7	13	76	15	63	78	0	21	0	0.75
50603199--50603243	15	2.9	16	83	9	58	84	4	11	0	0.76
50603199--50603241	21	2.0	21	86	8	61	86	4	9	0	0.71
50603724--50603966	54	4.4	53	75	14	215	35	10	10	43	1.74
50603778--50604024	37	6.6	38	79	10	258	36	10	11	42	1.75
50603778--50604024	75	3.3	74	81	10	272	36	10	11	42	1.75
50603795--50604044	20	13.2	19	69	21	96	36	11	12	40	1.78
50604002--50604084	38	2.2	37	82	6	94	36	12	13	38	1.82
50612316--50612970	75	8.7	75	85	7	796	28	15	20	36	1.93
50612313--50612970	151	4.4	151	85	7	831	28	15	20	36	1.93
50613286--50613447	30	5.4	30	72	11	109	33	19	6	41	1.76
50613976--50614030	22	2.5	21	81	16	67	78	1	20	0	0.85
50613970--50614028	28	2.1	29	87	9	86	76	1	22	0	0.88
50614327--50614359	6	5.8	6	92	7	52	84	15	0	0	0.61
50614836--50615251	17	22.5	17	70	20	207	34	12	10	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50614836--50615136	37	8.2	37	76	11	232	33	12	10	43	1.76
50614836--50615136	74	4.1	74	78	11	284	33	12	10	43	1.76
50614911--50615157	20	13.1	20	70	22	85	34	12	11	41	1.78
50615095--50615306	38	5.5	38	77	10	200	36	11	12	39	1.79
50615132--50615306	76	2.3	76	96	0	323	38	10	12	38	1.78
50621045--50621139	34	2.8	34	81	0	109	23	18	23	34	1.96
50630573--50630597	12	2.1	12	100	0	50	28	0	8	64	1.22
50630601--50630642	16	2.6	16	77	14	50	54	0	2	42	1.13
50630605--50630704	52	1.9	53	83	6	132	56	0	2	42	1.11
50630622--50630746	65	1.9	66	85	6	175	52	0	0	46	1.06
50630716--50630793	26	3.0	25	71	21	70	46	0	1	52	1.08
50630718--50630799	28	3.0	27	87	8	114	47	0	1	51	1.08
50636431--50636485	29	2.0	28	86	10	78	49	14	18	18	1.80
50642774--50642824	3	16.7	3	80	11	59	41	0	0	58	0.98
50655171--50655805	50	12.7	49	68	8	357	29	24	25	20	1.99
50655171--50655868	100	7.0	100	93	0	1137	28	24	25	21	1.99
50657278--50657328	3	16.7	3	80	11	59	41	0	0	58	0.98
50660801--50660862	14	4.2	14	81	8	61	46	8	3	41	1.49
50665837--50665861	3	8.3	3	100	0	50	32	0	0	68	0.90
50674863--50674907	22	2.0	22	100	0	90	31	15	22	31	1.95
50683671--50683709	16	2.5	15	84	8	51	43	0	0	56	0.99
50685218--50685301	3	27.7	3	97	2	159	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50691025--50691166	72	2.0	72	94	0	248	35	17	18	28	1.94
50691546--50691729	82	2.2	82	81	7	214	52	2	8	37	1.44
50691938--50691995	3	19.7	3	78	3	55	58	3	1	36	1.25
50693388--50693471	44	1.9	44	87	0	123	27	20	21	30	1.98
50693604--50694003	45	9.0	45	75	7	350	21	22	26	29	1.99
50693592--50694003	89	4.6	89	88	0	572	21	22	26	29	1.99
50695209--50695234	6	4.3	6	100	0	52	0	15	0	84	0.62
50696440--50696508	32	2.2	32	100	0	138	39	17	13	30	1.87
50701123--50701258	73	1.9	73	93	0	236	32	20	17	29	1.96
50701676--50701819	48	3.2	46	68	20	108	54	1	6	37	1.36
50702067--50702125	3	19.7	3	100	0	118	33	32	0	33	1.58
50708642--50708680	20	2.0	20	89	0	60	53	12	2	30	1.52
50721796--50721844	23	2.1	23	96	0	89	16	36	28	18	1.92
50721894--50721949	22	2.5	23	82	2	69	51	1	1	44	1.22
50721925--50721964	16	2.5	16	91	0	62	47	2	7	42	1.45
50721975--50722144	59	2.9	59	96	0	313	40	5	8	44	1.60
50722013--50722103	29	3.1	29	66	9	85	40	5	6	47	1.53
50722211--50722254	24	1.9	24	90	9	74	61	2	0	36	1.09
50722316--50722385	31	2.2	33	82	7	81	22	31	15	30	1.95
50723553--50723608	29	1.9	29	85	0	76	23	32	25	19	1.98
50724503--50724632	38	3.4	38	91	3	192	32	40	11	15	1.83
50730099--50730392	113	2.6	113	92	0	471	34	18	22	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50733315--50733365	23	2.2	23	96	0	93	23	21	27	27	1.99
50740450--50740474	13	1.9	13	100	0	50	52	0	16	32	1.44
50740641--50740739	23	4.3	23	88	5	155	22	20	27	30	1.98
50742865--50742899	15	2.2	16	90	5	54	37	0	14	48	1.44
50746060--50746092	17	1.9	17	100	0	66	36	6	6	51	1.51
50746053--50746109	30	1.9	30	88	0	87	35	5	3	56	1.39
50746075--50746218	61	2.4	61	81	4	166	39	4	7	48	1.51
50746440--50746485	7	6.6	7	78	16	51	60	10	0	28	1.30
50746440--50746485	15	3.3	15	82	11	62	60	10	0	28	1.30
50746515--50747254	9	82.4	9	73	11	529	47	17	1	33	1.59
50746446--50746982	18	28.3	21	66	22	127	49	15	2	33	1.57
50747066--50747259	25	7.7	25	78	13	127	44	20	0	34	1.55
50747128--50747243	41	2.8	42	82	7	123	44	20	0	33	1.58
50747216--50747261	7	6.0	7	90	9	56	52	17	0	30	1.45
50752781--50752820	21	1.9	21	89	0	62	35	17	45	2	1.62
50753202--50753368	43	3.9	43	82	5	203	31	20	20	27	1.98
50753189--50753370	86	2.1	87	88	3	269	29	20	20	29	1.98
50756417--50756463	23	2.0	23	87	4	67	57	4	6	31	1.43
50757436--50757486	22	2.3	21	80	12	57	47	5	3	43	1.46
50759605--50759649	18	2.6	17	80	13	56	8	8	17	64	1.47
50769176--50769251	29	2.7	27	74	13	73	34	2	1	61	1.18
50769187--50769261	39	1.9	39	86	10	109	36	4	0	60	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50769183--50769253	28	2.5	30	80	13	87	33	2	0	63	1.09
50769183--50769265	28	2.9	27	75	8	76	34	4	0	60	1.18
50773625--50773703	37	2.1	37	90	0	122	25	31	18	24	1.98
50773822--50774428	47	12.7	47	94	2	939	28	29	8	32	1.87
50773822--50774428	145	4.2	143	92	2	956	28	29	8	32	1.87
50779354--50779387	8	4.1	8	88	3	50	38	2	0	58	1.13
50785133--50785354	96	2.3	98	82	9	276	29	4	5	59	1.42
50798707--50798771	27	2.3	28	84	5	78	30	26	6	36	1.81
50798620--50798890	29	9.4	29	75	4	163	22	24	13	39	1.90
50803950--50804149	39	5.1	39	81	3	206	18	16	32	33	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240