genome.fa.s24.2.7.7.80.10.50.1000.204.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  204  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62082533--62082671	46	3.0	46	92	0	224	33	10	28	27	1.89
62092038--62092067	15	2.0	15	93	0	51	43	0	6	50	1.28
62098195--62098360	80	2.1	80	98	0	323	43	21	7	28	1.79
62109286--62109311	2	13.0	2	100	0	52	50	0	0	50	1.00
62115253--62115661	124	3.3	123	84	3	518	31	15	19	33	1.93
62115566--62115745	84	2.1	85	92	1	308	30	17	18	34	1.94
62115442--62115833	209	1.9	207	87	3	572	31	17	19	32	1.95
62116013--62116097	37	2.3	36	85	4	62	24	1	28	45	1.60
62116042--62116103	22	2.8	22	85	0	88	24	0	30	45	1.54
62116028--62116097	15	4.8	15	74	11	56	24	1	30	44	1.62
62116829--62116891	25	2.6	25	82	2	74	9	41	17	31	1.82
62117969--62118186	43	5.1	43	77	7	167	22	13	26	37	1.91
62118113--62118196	42	2.0	43	83	2	107	23	13	26	36	1.91
62119946--62120009	25	2.5	27	80	7	80	50	1	1	46	1.20
62123410--62123441	13	2.3	15	89	10	50	68	0	0	31	0.90
62125857--62125882	4	6.5	4	100	0	52	76	0	0	23	0.78
62126964--62126996	15	2.1	16	88	5	50	30	0	3	66	1.06
62127680--62127719	20	2.0	20	90	0	62	15	45	25	15	1.84
62131256--62131311	27	2.1	27	82	0	67	50	12	3	33	1.58
62131327--62131356	16	1.9	15	93	6	51	66	6	0	26	1.16
62133945--62134014	30	2.4	29	90	2	104	47	5	2	44	1.41
62133945--62134030	29	2.9	29	87	1	109	45	8	2	44	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62135911--62135973	32	2.0	32	84	6	83	33	9	19	38	1.84
62136113--62136151	19	2.0	20	85	14	55	56	7	0	35	1.28
62136126--62136177	17	2.9	18	82	8	61	53	1	0	44	1.11
62137842--62137966	40	3.2	39	71	7	110	26	16	24	32	1.96
62138143--62138175	15	2.1	16	88	5	50	30	0	3	66	1.06
62138865--62139159	112	2.6	113	76	9	296	33	19	22	25	1.97
62139071--62139246	75	2.3	75	81	1	210	33	15	23	27	1.95
62139161--62139777	115	5.4	114	77	6	581	32	18	22	26	1.97
62139145--62139777	114	5.5	113	77	6	537	32	18	22	27	1.97
62139159--62139777	229	2.7	227	79	3	670	32	18	22	26	1.97
62140093--62140132	15	2.7	15	92	3	64	25	0	30	45	1.54
62140092--62140142	14	3.6	14	81	2	57	21	0	37	41	1.54
62141336--62141422	44	2.0	44	95	0	156	26	33	8	32	1.85
62143058--62143137	34	2.3	35	93	2	135	31	5	2	61	1.31
62143154--62143234	9	9.0	9	71	15	60	44	17	1	37	1.57
62143152--62143230	16	5.0	16	76	13	74	44	16	1	37	1.56
62143296--62144086	25	36.0	22	66	19	86	50	18	1	29	1.56
62143413--62143468	24	2.5	21	76	15	67	50	21	1	26	1.59
62143427--62143908	12	40.7	12	65	19	165	52	17	1	29	1.52
62143456--62144145	9	78.4	9	68	20	254	50	18	1	29	1.55
62143413--62143691	21	13.5	21	67	19	99	51	17	1	29	1.52
62143415--62143691	128	2.2	128	94	1	457	51	18	1	29	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62143435--62143860	223	1.9	222	87	4	635	53	17	0	28	1.50
62143841--62144156	16	18.7	16	73	16	189	47	19	1	30	1.60
62143798--62144152	25	14.3	24	80	6	265	49	18	1	29	1.59
62143553--62143858	95	3.2	95	98	0	578	52	17	0	28	1.51
62143891--62143986	40	2.4	40	98	0	183	47	18	4	29	1.67
62149895--62150182	42	6.8	42	77	3	265	33	20	21	25	1.97
62150613--62150668	27	2.1	27	82	0	67	50	12	3	33	1.58
62153119--62153201	27	2.9	27	80	7	76	48	7	3	40	1.48
62153129--62153200	27	2.5	28	82	11	83	47	6	4	41	1.50
62154719--62154762	17	2.6	17	96	0	79	59	4	9	27	1.48
62155189--62155221	18	1.9	17	88	11	50	48	0	15	36	1.45
62156614--62156743	54	2.4	54	91	2	201	36	13	21	28	1.92
62156681--62156789	45	2.4	46	89	4	161	33	13	23	28	1.93
62158385--62158439	19	2.8	19	86	8	76	56	7	0	36	1.27
62158431--62158473	18	2.4	18	84	3	61	44	0	0	55	0.99
62158434--62158479	19	2.3	21	82	17	71	50	0	0	50	1.00
62159248--62159284	14	2.9	14	88	11	53	72	0	27	0	0.84
62159551--62159588	18	2.1	19	85	5	51	39	0	26	34	1.57
62163438--62163591	41	3.8	41	74	12	138	16	16	27	38	1.90
62164169--62164288	15	8.1	14	73	14	55	19	0	47	33	1.50
62164192--62164288	7	12.9	7	71	14	68	18	0	48	32	1.49
62164191--62164273	22	3.6	22	82	12	105	18	0	48	33	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62164203--62164288	15	5.6	15	76	10	75	18	0	50	31	1.48
62165809--62165854	22	2.0	22	91	8	74	34	41	0	23	1.55
62166936--62166993	26	2.2	26	93	0	98	39	17	3	39	1.66
62167459--62167489	16	1.9	16	100	0	62	38	3	6	51	1.44
62168174--62168367	69	2.8	69	91	3	304	44	5	4	46	1.44
62168203--62168330	21	5.8	21	66	18	64	42	5	3	48	1.42
62168360--62168559	22	9.1	22	68	22	98	46	16	4	34	1.65
62168392--62168486	9	10.6	9	71	17	72	45	18	2	33	1.62
62168364--62168584	38	5.9	38	71	15	149	46	15	4	33	1.65
62168392--62168486	16	5.3	18	72	14	72	45	18	2	33	1.62
62168457--62168561	51	2.1	51	100	0	210	47	13	5	33	1.66
62172862--62172900	9	4.3	9	86	0	51	30	43	23	2	1.67
62173144--62173632	43	11.3	43	85	4	531	17	18	31	31	1.95
62175038--62175120	41	2.0	41	92	0	139	44	24	8	22	1.80
62177717--62177776	28	2.2	27	82	11	70	38	1	11	48	1.50
62183946--62184099	70	2.2	70	97	2	290	48	7	14	28	1.72
62184523--62184565	7	6.1	7	91	0	68	44	37	2	16	1.60
62186338--62186375	5	7.6	5	100	0	76	21	0	0	78	0.74
62188572--62188599	12	2.3	12	100	0	56	42	14	14	28	1.84
62200282--62200312	12	2.6	12	94	0	53	6	3	6	83	0.88
62206355--62206447	19	4.9	19	76	14	68	13	8	2	75	1.13
62206443--62206485	9	4.8	9	83	11	52	20	0	4	74	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62206489--62206596	42	2.5	42	80	11	119	40	0	5	53	1.24
62206515--62206598	20	3.8	23	82	10	113	38	0	2	59	1.10
62206521--62206615	42	2.2	42	81	9	113	43	0	2	54	1.12
62207049--62207103	20	2.7	19	80	8	65	61	0	3	34	1.13
62207549--62207614	20	3.2	20	66	19	55	37	7	3	51	1.46
62207543--62207625	41	2.0	42	92	2	141	34	7	3	54	1.46
62207751--62207779	14	2.0	15	93	6	51	55	0	0	44	0.99
62209952--62210084	30	4.4	30	89	0	176	28	24	18	28	1.98
62213407--62213461	12	4.0	13	75	25	51	50	1	0	47	1.11
62213450--62213499	10	5.0	10	80	20	52	62	0	0	38	0.96
62213456--62213492	12	3.5	11	86	13	51	64	0	0	35	0.94
62213464--62213491	12	2.3	12	100	0	56	71	0	0	28	0.86
62213457--62213505	22	2.2	23	86	13	68	65	2	0	32	1.04
62213463--62213510	22	2.2	22	82	14	55	68	2	0	29	1.01
62213527--62213606	24	3.3	24	87	5	90	57	2	0	40	1.12
62213548--62213596	14	3.9	14	72	22	54	57	4	0	38	1.18
62213562--62213640	10	7.2	10	74	20	52	59	3	0	36	1.16
62213531--62213630	24	4.2	23	78	15	89	59	4	0	37	1.17
62213539--62213595	13	4.8	12	74	23	50	54	3	0	42	1.17
62213688--62213750	21	3.0	20	77	22	60	52	1	0	46	1.10
62213694--62213746	22	2.5	20	82	14	63	52	1	0	45	1.11
62213691--62213751	20	3.0	20	79	13	63	52	1	0	45	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62213711--62213811	33	3.0	33	85	8	116	57	1	0	39	1.17
62214104--62214144	14	3.0	14	79	13	50	48	0	0	51	1.00
62214123--62214199	29	2.8	29	81	13	74	50	0	1	48	1.09
62214129--62214199	26	2.6	28	81	16	87	50	0	1	47	1.09
62214219--62214294	14	5.5	14	68	14	59	53	1	1	43	1.17
62214310--62214351	21	2.0	20	90	4	66	61	0	0	38	0.96
62214314--62214377	20	3.5	20	65	32	54	60	0	0	39	0.97
62214429--62214462	9	3.8	9	85	14	52	79	2	0	17	0.86
62214416--62214458	13	3.2	13	86	3	50	76	4	0	18	0.95
62214414--62214458	23	2.0	23	86	4	65	75	4	0	20	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240