genome.fa.s24.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  169  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52529620--52529675	24	2.3	24	77	17	62	66	3	1	28	1.19
52529624--52529671	16	3.1	15	84	6	60	64	4	2	29	1.23
52529787--52529843	19	2.8	20	73	7	62	56	5	7	31	1.49
52529822--52529886	25	2.8	24	83	6	80	52	6	7	33	1.55
52529875--52529939	33	2.0	33	84	6	87	56	3	4	35	1.35
52529896--52529953	15	3.7	15	73	15	55	58	1	3	36	1.25
52529969--52530040	22	3.2	22	74	16	60	58	2	2	36	1.27
52529995--52530040	25	1.9	25	86	8	69	60	0	4	34	1.16
52530413--52530467	28	2.0	28	92	7	94	40	41	0	18	1.50
52530551--52530725	30	5.8	30	91	0	287	22	3	48	25	1.66
52530551--52530725	60	2.9	60	97	0	323	22	3	48	25	1.66
52531365--52531571	76	2.7	76	90	2	299	31	20	14	33	1.93
52531558--52531585	14	2.0	14	100	0	56	57	7	21	14	1.61
52531567--52531735	73	2.3	74	85	2	232	36	20	17	24	1.94
52531715--52531749	14	2.5	14	95	0	61	60	8	14	17	1.58
52531404--52531896	162	3.0	160	86	4	650	34	21	16	27	1.95
52531642--52531826	89	2.1	87	84	6	232	37	21	16	25	1.93
52531769--52531968	73	2.8	71	84	2	256	33	21	14	31	1.93
52531578--52532109	235	2.3	232	83	6	637	34	22	16	26	1.95
52531960--52532101	72	2.0	73	90	1	223	38	23	15	22	1.92
52531826--52532115	160	1.8	157	85	6	406	34	22	15	27	1.95
52532255--52532889	72	8.7	72	75	11	392	34	19	15	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52532255--52532590	74	4.5	74	86	5	403	32	20	15	31	1.94
52532339--52532871	281	1.9	279	88	3	804	33	20	15	30	1.94
52532132--52532875	355	2.1	358	93	2	1284	33	20	15	30	1.94
52532768--52533131	121	3.0	120	85	8	488	37	21	14	26	1.92
52533008--52533344	72	4.7	72	87	3	430	34	22	15	27	1.94
52533060--52533330	147	1.8	146	90	2	436	30	23	16	28	1.97
52533224--52533456	120	1.9	124	87	3	348	36	21	15	26	1.93
52533348--52533518	68	2.5	69	82	6	190	32	22	15	29	1.94
52546130--52546183	23	2.5	22	87	6	74	59	7	1	31	1.36
52546133--52546203	3	23.3	3	74	8	63	61	5	1	30	1.27
52546667--52546704	18	2.1	18	90	0	58	50	0	50	0	1.00
52546668--52546700	11	2.9	12	91	8	52	48	0	51	0	1.00
52546800--52546836	16	2.4	16	90	4	58	13	2	2	81	0.92
52553606--52553636	16	1.9	16	93	0	53	9	9	9	70	1.33
52555751--52555790	21	2.0	21	90	9	66	40	22	15	22	1.91
52565942--52566030	44	2.2	40	75	16	99	16	20	7	55	1.66
52565954--52566045	44	2.1	44	93	0	157	18	16	9	55	1.68
52565967--52566036	22	3.2	22	64	22	56	18	17	8	55	1.66
52566370--52566463	40	2.3	40	92	0	152	48	9	14	26	1.75
52575798--52575825	14	2.0	14	100	0	56	35	21	14	28	1.92
52578336--52578376	19	2.2	18	91	4	64	65	4	2	26	1.25
52578362--52578461	28	3.5	28	80	10	89	57	3	1	39	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52578388--52578440	19	2.8	18	80	5	61	56	5	1	35	1.34
52578354--52578440	9	9.3	9	75	10	77	58	4	1	35	1.26
52579307--52579607	9	31.3	9	69	19	132	33	1	6	58	1.34
52579361--52579458	19	4.9	19	78	15	92	32	3	8	56	1.44
52579415--52579608	104	1.9	105	82	13	249	32	0	6	60	1.26
52589953--52590006	26	2.1	26	100	0	108	38	3	12	44	1.61
52590013--52590054	17	2.5	17	80	7	50	45	2	0	52	1.13
52590651--52590736	43	2.0	43	100	0	172	37	16	18	27	1.92
52591144--52591217	12	6.2	12	67	17	55	5	37	0	56	1.22
52591177--52592195	96	10.7	96	89	5	1404	5	33	2	58	1.35
52591381--52591436	12	4.4	12	74	12	58	0	30	3	66	1.09
52591477--52591628	12	11.4	12	70	19	72	3	31	2	61	1.28
52591178--52592195	288	3.6	288	90	5	1572	5	33	2	58	1.35
52592134--52592198	27	2.4	28	86	2	87	3	33	3	60	1.28
52592365--52592409	12	3.8	13	77	16	53	4	31	2	62	1.27
52592567--52592623	25	2.5	22	81	16	55	3	35	3	57	1.33
52594759--52594793	2	18.0	2	94	5	63	48	0	0	51	1.00
52595415--52595451	19	2.0	18	89	5	56	51	8	5	35	1.55
52596408--52596438	15	2.0	16	93	6	55	64	0	0	35	0.94
52599353--52599381	6	4.8	6	100	0	58	31	0	0	68	0.89
52604590--52604639	4	13.0	4	89	8	59	18	0	32	50	1.47
52611337--52611384	20	2.4	20	89	6	71	33	33	2	31	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52612733--52612772	20	2.0	20	95	0	71	45	10	7	37	1.66
52615964--52616016	23	2.3	23	96	0	97	37	7	16	37	1.78
52619160--52619216	25	2.3	25	84	3	71	28	24	22	24	2.00
52620825--52620858	16	2.1	16	88	0	50	41	2	20	35	1.68
52624177--52624290	40	2.9	39	75	5	122	41	26	17	14	1.88
52625907--52625950	15	2.8	15	82	6	52	65	4	0	29	1.12
52626079--52626108	9	3.4	9	95	4	53	26	0	0	73	0.84
52628933--52629000	29	2.3	29	85	5	93	27	30	13	27	1.94
52628822--52629149	174	1.9	174	92	1	550	30	24	14	30	1.95
52629102--52629180	29	2.7	30	82	13	110	29	30	15	25	1.96
52637091--52637158	29	2.3	29	85	5	93	27	30	13	27	1.94
52637260--52637338	29	2.7	30	82	13	110	29	30	15	25	1.96
52643183--52643211	14	2.0	15	93	6	51	65	0	27	6	1.18
52646301--52646348	25	2.0	24	84	8	62	37	8	8	45	1.64
52647856--52648065	39	5.4	39	84	5	210	32	29	18	19	1.95
52648033--52648088	23	2.4	23	81	0	76	37	35	14	12	1.84
52653938--52653989	24	2.2	24	89	0	77	55	9	1	32	1.43
52655908--52655959	24	2.2	24	89	0	77	55	9	1	32	1.43
52657387--52657414	12	2.3	12	100	0	56	64	0	0	35	0.94
52658965--52659016	26	2.0	26	92	0	86	26	11	1	59	1.42
52662481--52662653	21	8.3	21	81	1	188	46	15	20	17	1.83
52662503--52662654	42	3.6	42	89	0	214	47	13	21	17	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52670531--52670638	25	4.3	25	85	2	101	36	18	24	21	1.95
52670499--52670638	50	2.8	50	78	5	133	35	20	22	22	1.96
52674598--52674662	32	2.0	32	93	0	112	29	33	9	27	1.88
52676699--52676746	24	2.0	24	95	0	87	60	4	10	25	1.47
52681385--52681437	21	2.5	21	84	0	61	30	32	9	28	1.88
52685372--52685411	21	1.9	21	94	0	71	17	5	0	77	0.94
52689675--52689732	27	2.2	27	87	3	82	29	8	1	60	1.36
52691179--52691226	22	2.2	22	84	0	60	29	29	0	41	1.56
52697363--52697413	26	2.0	26	88	0	75	37	9	15	37	1.81
52700761--52700796	18	2.0	18	100	0	72	38	5	11	44	1.63
52705605--52705748	68	2.1	69	84	3	184	52	3	2	41	1.33
52710600--52710678	37	2.1	37	86	9	108	24	30	20	25	1.98
52710797--52711494	47	14.7	47	94	1	1200	29	29	8	32	1.87
52717856--52717906	26	1.9	27	81	18	63	49	13	5	31	1.66
52721322--52721634	158	2.0	158	92	0	518	36	10	12	40	1.78
52723296--52723454	13	11.8	13	74	16	83	42	1	19	37	1.60
52723331--52723372	14	3.2	13	83	6	50	52	0	19	28	1.46
52723309--52723384	27	2.8	26	88	6	107	43	0	21	35	1.53
52723289--52723425	68	2.0	67	85	4	186	43	0	18	36	1.56
52723290--52723452	68	2.4	67	82	7	179	43	1	19	36	1.59
52723963--52724012	25	2.0	25	92	0	82	14	0	28	58	1.37
52724073--52724243	87	2.0	87	100	0	342	39	7	19	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52726315--52726418	52	2.0	52	100	0	208	26	17	11	44	1.83
52733204--52733246	23	1.9	22	90	4	68	55	2	6	34	1.39
52733268--52733330	12	5.2	12	70	14	58	55	1	3	39	1.25
52733971--52734025	19	2.7	21	88	11	96	36	12	10	40	1.79
52735689--52735736	20	2.4	20	85	0	60	45	8	12	33	1.72
52737914--52738041	39	3.3	39	83	6	152	26	28	20	24	1.99
52739261--52739439	85	2.1	85	100	0	358	26	27	8	37	1.85
52745907--52746090	79	2.3	80	79	9	198	25	28	22	23	1.99
52745888--52746090	40	5.1	40	79	9	211	25	28	22	24	2.00
52747254--52747432	85	2.1	85	100	0	358	26	27	8	37	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240