genome.fa.s24.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  148  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46444567--46444618	15	3.6	15	80	12	56	53	1	0	44	1.11
46444784--46444831	26	1.9	25	84	16	64	52	2	0	45	1.12
46444774--46444965	90	2.1	91	84	7	248	45	4	4	45	1.43
46452411--46452438	11	2.5	11	100	0	56	42	10	39	7	1.67
46456020--46456526	254	2.0	253	92	1	847	30	13	22	34	1.92
46461429--46461462	17	2.0	17	88	0	50	47	17	11	23	1.81
46470362--46470414	28	1.9	28	96	3	99	11	1	22	64	1.36
46471702--46471728	7	3.9	7	100	0	54	70	0	0	29	0.88
46474249--46474294	9	5.1	9	94	0	83	43	21	10	23	1.84
46475108--46475179	35	2.1	35	100	0	144	38	13	16	30	1.88
46477186--46477257	11	7.1	10	72	17	51	41	1	0	56	1.07
46477172--46477251	39	2.1	38	90	2	124	33	1	0	65	1.01
46477172--46477313	51	3.3	40	76	21	144	34	1	0	64	1.03
46477187--46477303	51	2.3	51	92	2	191	37	1	0	60	1.07
46477225--46477263	11	3.5	11	89	3	60	46	2	0	51	1.14
46477275--46477303	11	2.5	12	88	11	51	41	0	0	58	0.98
46477285--46477333	22	2.2	21	82	10	62	36	0	2	61	1.08
46477744--46477777	16	2.1	16	94	0	59	32	8	5	52	1.56
46481853--46482094	91	2.7	90	81	7	255	32	19	9	37	1.85
46482170--46482216	19	2.4	20	82	7	60	63	2	0	34	1.06
46482183--46482350	10	17.2	10	66	22	63	64	0	2	32	1.13
46482165--46482312	29	5.2	28	75	10	106	66	0	2	31	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46482183--46482277	21	4.9	18	73	17	68	64	0	1	34	1.01
46482260--46482312	11	5.2	11	78	17	60	67	0	3	28	1.07
46482271--46482312	18	2.3	18	95	4	75	69	0	4	26	1.08
46482210--46482412	29	7.0	28	73	17	75	66	0	4	28	1.18
46482359--46482411	10	5.2	11	74	21	53	71	1	1	24	1.06
46482260--46482411	11	15.3	11	67	22	54	65	1	5	27	1.22
46482607--46482636	11	2.7	11	100	0	60	16	6	0	76	0.99
46482597--46482654	22	2.6	23	73	13	59	27	3	0	68	1.05
46482621--46482698	9	8.6	9	72	13	61	29	1	1	67	1.06
46482820--46483057	90	2.7	89	80	8	279	36	10	18	35	1.84
46490551--46490637	42	2.1	42	100	0	174	28	18	16	36	1.92
46491179--46491221	18	2.4	18	76	0	50	58	9	11	20	1.61
46491297--46491662	183	2.0	183	96	1	671	34	18	15	32	1.91
46491990--46492061	23	3.1	23	87	0	99	27	18	18	36	1.94
46492105--46492156	17	3.2	17	70	10	54	38	26	11	23	1.89
46492098--46492186	32	2.8	32	86	3	117	39	25	12	22	1.89
46492224--46492531	24	12.8	24	78	2	190	20	11	34	33	1.88
46492249--46492452	72	2.8	72	78	5	223	20	11	35	32	1.88
46492293--46492526	72	3.2	73	78	6	210	20	11	35	33	1.88
46493703--46493758	15	3.9	14	75	13	51	35	5	0	58	1.21
46499183--46499215	13	2.6	13	90	4	50	0	24	0	75	0.80
46504939--46505071	44	3.0	44	87	4	178	36	19	5	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46505053--46505083	16	1.9	16	93	0	53	25	25	6	41	1.79
46508447--46508554	28	4.0	28	66	22	79	61	5	2	30	1.33
46508770--46508857	18	4.5	19	69	27	60	37	1	4	56	1.27
46508771--46508853	30	2.8	28	71	18	69	36	1	4	57	1.28
46508947--46508984	16	2.5	15	91	8	67	18	2	0	78	0.86
46516065--46516097	16	2.1	16	100	0	66	24	0	12	63	1.28
46543822--46543964	50	2.7	53	83	6	166	27	19	27	25	1.99
46558495--46558730	69	3.4	69	78	5	194	22	23	22	32	1.98
46558542--46558832	69	4.2	69	74	6	205	21	21	24	32	1.97
46558542--46558797	137	1.9	138	79	0	298	21	21	24	32	1.98
46558783--46558913	69	1.9	69	87	0	190	21	23	22	32	1.98
46558802--46558991	67	2.8	68	82	1	175	20	24	22	32	1.98
46565700--46565748	24	2.0	24	92	0	80	34	20	20	24	1.96
46566584--46566618	16	2.1	16	89	5	52	22	14	5	57	1.59
46578663--46578860	40	4.9	40	82	2	218	21	19	23	35	1.95
46578711--46578867	20	7.9	20	67	1	75	21	18	24	36	1.95
46578663--46578859	80	2.5	79	84	2	241	20	19	23	36	1.95
46593334--46593380	22	2.1	22	100	0	94	34	14	4	46	1.64
46596177--46596206	15	2.0	15	93	0	51	46	10	6	36	1.64
46598621--46598713	30	3.1	30	92	1	150	32	9	10	47	1.71
46598751--46598776	7	3.7	7	100	0	52	88	0	11	0	0.52
46609856--46609900	22	2.0	22	83	8	56	40	4	0	55	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46618390--46618443	26	2.1	26	100	0	108	44	14	18	22	1.86
46629702--46629744	20	2.1	21	86	4	61	55	2	0	41	1.12
46629693--46629744	21	2.4	21	84	9	61	59	1	0	38	1.08
46633145--46633644	114	4.4	113	74	7	330	31	19	22	26	1.98
46633750--46633791	15	2.9	15	96	3	77	21	0	28	50	1.49
46633722--46633791	30	2.4	29	79	13	72	22	0	30	47	1.52
46634540--46634648	53	2.1	53	92	0	182	18	4	37	39	1.71
46637344--46637368	6	4.2	6	100	0	50	16	0	0	84	0.63
46642615--46642722	42	2.6	42	86	0	135	31	17	40	10	1.83
46642615--46642722	21	5.1	21	76	4	92	31	17	40	10	1.83
46643042--46643160	42	2.8	41	83	5	157	38	20	18	22	1.93
46648995--46649061	22	3.0	22	66	30	61	37	13	4	44	1.64
46648995--46649088	44	2.1	44	96	0	170	38	12	5	43	1.66
46649067--46649110	22	2.0	22	91	4	72	40	13	4	40	1.65
46650765--46650803	15	2.4	16	83	12	53	58	0	5	35	1.20
46653206--46653234	2	14.5	2	100	0	58	0	0	48	51	1.00
46653923--46653966	22	2.0	22	100	0	88	9	22	13	54	1.67
46653987--46654042	18	3.1	18	77	12	62	16	0	33	50	1.45
46653971--46654042	36	1.9	37	83	13	94	16	0	33	50	1.46
46659327--46659375	23	2.1	23	85	7	64	34	4	26	34	1.76
46672696--46672761	21	3.2	21	68	12	55	18	31	19	30	1.96
46674548--46674610	21	3.2	20	74	24	55	42	19	1	36	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46679146--46679190	21	2.2	20	84	15	56	24	4	13	57	1.54
46681404--46681684	43	6.6	42	76	9	232	33	25	17	23	1.96
46681361--46681684	85	3.8	85	86	0	425	33	24	17	24	1.97
46681658--46681710	26	2.0	26	88	0	79	33	32	15	18	1.92
46682066--46682104	12	3.2	12	82	7	51	38	10	2	48	1.51
46682063--46682106	13	3.5	13	84	6	63	38	9	2	50	1.47
46700518--46700543	7	3.7	7	100	0	52	11	0	42	46	1.40
46706084--46706145	28	2.2	28	91	0	97	29	24	25	20	1.99
46706094--46706166	28	2.6	28	91	0	110	35	24	19	20	1.95
46706397--46706634	32	7.5	32	78	4	248	38	20	20	21	1.94
46706411--46706634	64	3.5	64	91	0	349	37	20	20	21	1.94
46706634--46706687	26	2.1	26	85	0	72	38	25	18	16	1.92
46706669--46706739	27	2.7	25	83	12	81	33	22	23	19	1.97
46721312--46721354	23	2.0	21	81	9	50	39	13	11	34	1.82
46730532--46730564	16	2.1	16	94	0	57	36	12	15	36	1.84
46737437--46737469	17	1.9	17	93	0	57	45	12	9	33	1.73
46737442--46737477	17	2.1	17	89	0	54	52	13	5	27	1.63
46738782--46739136	183	1.9	183	89	0	548	38	14	22	24	1.91
46741768--46741803	13	2.7	13	86	4	54	13	0	41	44	1.44
46742005--46742284	126	2.2	126	87	1	427	33	18	21	26	1.96
46748900--46748943	21	2.0	22	91	4	72	29	36	2	31	1.70
46750378--46750445	28	2.5	28	85	4	86	33	2	11	51	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46750378--46750456	26	2.9	27	83	5	79	32	2	12	51	1.53
46750463--46750496	5	7.0	5	90	3	52	55	0	0	44	0.99
46750886--46750942	18	3.2	18	78	9	71	26	1	22	49	1.60
46758554--46758609	24	2.5	21	77	8	58	80	8	8	1	0.98
46758554--46758603	21	2.4	21	83	6	66	80	8	10	2	0.99
46765835--46765879	10	4.3	10	91	8	72	62	0	0	37	0.96
46765835--46765879	21	2.1	21	95	0	81	62	0	0	37	0.96
46765955--46765988	11	3.1	11	91	0	50	52	0	0	47	1.00
46766061--46766097	18	2.0	20	84	10	51	35	0	0	64	0.94
46766608--46766680	29	2.6	28	83	12	80	50	4	5	39	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240