genome.fa.s24.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  105  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32440110--32440204	46	2.1	46	97	0	181	34	2	22	41	1.66
32445068--32445110	13	3.2	13	86	6	50	39	2	2	55	1.25
32445063--32445127	15	4.2	15	82	7	67	44	1	1	52	1.19
32445149--32445234	10	9.1	9	71	13	66	34	1	4	59	1.26
32445149--32445214	27	2.3	29	87	7	91	31	1	4	62	1.25
32459267--32459326	25	2.4	25	91	0	93	21	23	25	30	1.99
32459400--32459457	26	2.2	26	85	11	75	48	3	20	27	1.66
32464941--32465020	25	3.2	24	75	16	74	28	17	27	26	1.98
32464967--32465172	25	8.2	26	75	9	153	32	17	28	20	1.96
32480834--32480940	27	4.0	27	74	7	92	42	17	15	23	1.88
32482403--32482486	40	2.1	40	82	6	100	38	0	0	61	0.96
32483163--32483197	13	2.7	13	86	0	52	68	2	8	20	1.29
32491123--32491166	19	2.3	19	100	0	88	43	4	25	27	1.74
32494081--32494251	80	2.1	81	85	3	229	40	19	19	20	1.92
32494081--32494251	27	6.4	27	84	2	211	40	19	19	20	1.92
32498140--32498270	30	4.3	31	75	13	103	38	3	17	41	1.65
32512172--32512201	10	3.0	10	90	0	51	30	26	0	43	1.55
32520060--32520094	14	2.4	15	85	4	54	37	0	20	42	1.52
32528302--32528332	16	1.9	16	93	0	53	74	3	0	22	0.96
32528787--32528825	8	5.2	8	82	17	57	69	0	0	30	0.89
32528786--32528825	21	1.9	21	100	0	80	70	0	0	30	0.88
32528795--32528819	13	1.9	13	100	0	50	76	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32528786--32528838	19	2.7	20	80	11	65	69	0	1	28	0.99
32528778--32528842	30	2.2	28	86	5	85	69	1	1	27	1.07
32535881--32535930	26	1.9	26	83	0	64	52	4	14	30	1.59
32537328--32537382	16	3.1	18	80	10	69	32	21	16	29	1.95
32537574--32537617	18	2.4	18	92	0	70	43	15	15	25	1.87
32540394--32540443	9	6.0	9	84	11	63	30	0	2	68	1.01
32540391--32540442	26	2.1	26	89	7	81	26	0	3	69	1.06
32540398--32540443	17	2.9	16	87	6	67	28	0	2	69	1.00
32540778--32540826	25	1.9	26	87	4	73	40	8	8	42	1.64
32544440--32544511	19	3.7	19	90	7	117	34	11	16	37	1.84
32550169--32550203	6	6.0	6	93	3	54	82	2	14	0	0.77
32551501--32551636	43	3.1	43	69	8	130	25	22	27	24	1.99
32551444--32551638	88	2.2	88	89	1	293	26	22	28	23	1.99
32557030--32557452	88	4.8	88	91	0	657	25	23	25	25	2.00
32557453--32557839	44	8.8	44	84	4	467	31	14	24	30	1.94
32557030--32557516	176	2.8	174	86	2	557	26	22	25	25	2.00
32557059--32557870	264	3.1	263	80	2	727	28	18	25	27	1.98
32557455--32557867	89	4.7	89	81	5	453	31	14	24	29	1.95
32557456--32557860	133	3.1	133	90	1	627	30	14	24	29	1.95
32557455--32557885	175	2.4	177	86	2	474	30	15	23	29	1.95
32563380--32563407	14	2.0	14	100	0	56	14	14	28	42	1.84
32567083--32567141	31	2.0	29	83	6	73	25	3	11	59	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32570350--32570406	24	2.4	24	84	0	87	36	15	15	31	1.90
32572949--32573098	45	3.4	45	82	3	187	23	24	20	31	1.98
32575575--32575608	4	8.0	4	90	9	50	23	0	2	73	0.97
32575558--32575617	22	2.7	22	73	19	61	26	0	6	66	1.16
32577962--32578000	18	2.2	18	85	0	51	61	2	23	12	1.43
32579394--32579427	4	8.0	4	90	9	50	23	0	2	73	0.97
32579377--32579436	22	2.7	22	73	19	61	26	0	6	66	1.16
32581423--32581463	23	1.9	22	85	14	59	53	4	2	39	1.35
32581412--32581437	3	8.7	3	100	0	52	69	0	0	30	0.89
32582179--32582246	31	2.2	31	84	5	93	32	13	13	41	1.83
32592429--32592712	57	5.1	57	90	4	402	30	18	7	43	1.77
32596455--32596493	19	2.0	21	90	10	64	66	5	10	17	1.39
32598026--32598074	24	2.0	24	84	0	62	14	26	0	59	1.36
32599695--32599769	26	2.9	26	89	0	87	44	18	16	21	1.87
32599914--32600013	27	3.7	27	80	7	123	22	13	21	44	1.86
32599927--32600013	27	3.3	27	85	6	124	19	14	19	45	1.85
32612830--32612874	18	2.5	18	85	0	54	37	13	20	28	1.90
32627902--32627997	27	3.6	27	77	5	104	18	26	16	38	1.92
32628011--32628184	45	3.9	45	85	1	215	24	20	13	40	1.89
32631518--32631548	15	2.1	15	100	0	62	32	6	12	48	1.67
32635604--32635653	22	2.3	21	86	6	64	52	2	6	40	1.38
32635734--32635773	21	1.9	21	84	0	53	37	7	5	50	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32638918--32639159	50	4.7	49	84	6	277	26	21	29	23	1.99
32642038--32642100	32	1.9	33	87	3	92	30	0	3	66	1.07
32642038--32642088	18	3.1	17	81	18	63	33	0	3	62	1.13
32660535--32660617	41	2.0	41	100	0	166	39	9	28	21	1.85
32662866--32663937	132	8.1	132	90	3	1649	29	20	25	24	1.99
32663049--32663479	88	4.9	88	66	17	198	29	20	26	23	1.99
32668359--32668385	14	1.9	14	100	0	54	48	7	14	29	1.71
32681771--32681849	37	2.1	37	90	0	122	25	31	18	24	1.98
32681968--32682381	49	8.6	49	94	1	660	28	28	9	33	1.89
32685308--32685431	58	2.1	58	92	0	203	26	10	28	34	1.89
32697374--32697415	19	2.4	18	85	14	54	23	14	2	59	1.47
32697388--32697449	25	2.5	24	74	7	61	27	9	0	62	1.26
32700579--32700609	12	2.6	12	94	0	53	35	19	16	29	1.93
32701022--32701079	29	2.0	29	93	0	98	25	1	25	46	1.62
32701337--32701481	76	1.9	76	94	0	254	33	15	20	31	1.93
32703135--32703186	21	2.5	21	87	0	77	26	11	30	30	1.92
32705177--32705257	42	2.0	42	88	7	123	49	2	20	27	1.62
32716650--32716698	19	2.7	18	80	20	57	67	4	4	24	1.26
32716722--32716766	19	2.4	19	84	0	63	77	2	6	13	1.05
32720716--32720762	17	2.8	17	74	3	51	46	0	0	53	1.00
32720746--32720863	15	8.0	15	68	24	56	50	3	0	44	1.24
32729306--32729364	10	5.2	11	70	22	50	49	13	0	37	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32729297--32729362	13	5.5	13	72	26	65	46	13	1	37	1.53
32729297--32729371	23	3.3	23	90	0	114	48	13	1	37	1.51
32735475--32735504	12	2.4	13	94	5	53	20	20	6	53	1.67
32735704--32735945	50	4.7	50	77	7	195	24	26	20	28	1.99
32744675--32744717	13	3.2	13	87	6	59	9	2	2	86	0.76
32747121--32747166	19	2.4	19	76	16	51	26	21	13	39	1.90
32750917--32751236	44	7.3	44	66	6	164	29	29	21	20	1.98
32750965--32751275	44	7.1	44	67	10	197	28	27	23	20	1.99
32750820--32751299	264	1.8	264	90	0	773	29	26	22	21	1.99
32750820--32751299	88	5.5	88	89	1	692	29	26	22	21	1.99
32751313--32751604	44	6.8	44	83	5	373	28	18	25	28	1.98
32751313--32751562	126	2.0	126	95	0	446	29	18	25	27	1.98
32751963--32752068	44	2.4	43	78	6	106	29	16	20	33	1.95
32755778--32755820	4	10.5	4	85	5	50	2	16	0	81	0.79
32770717--32770822	53	2.0	53	84	0	140	35	12	24	27	1.91
32770948--32771046	29	3.3	29	68	10	83	32	17	25	25	1.97
32770948--32771202	61	4.2	61	79	3	253	35	14	23	26	1.93
32770948--32771173	122	1.9	122	81	1	283	35	14	23	26	1.93
32771157--32771234	32	2.4	32	84	0	102	29	14	26	29	1.95
32771091--32771293	93	2.2	93	81	1	246	34	12	25	27	1.92
32777635--32777688	27	2.0	27	81	0	63	29	12	27	29	1.94
32783102--32783135	16	2.1	16	100	0	68	29	5	32	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32783531--32783640	39	2.8	39	91	0	175	43	11	13	30	1.80
32783761--32783818	27	2.1	27	84	6	73	32	12	29	25	1.92
32787212--32787367	79	2.0	77	93	3	269	43	10	9	35	1.73
32809694--32809759	20	3.3	20	79	12	66	18	31	21	28	1.96
32812177--32812215	13	2.8	13	85	11	51	2	0	15	82	0.79
32817505--32817532	5	5.6	5	100	0	56	0	17	0	82	0.68
32823060--32823096	11	3.6	11	79	20	53	59	0	0	40	0.97
32840468--32840548	30	2.7	30	90	5	121	38	22	1	38	1.62
32840493--32840591	30	3.3	29	84	5	110	38	22	2	37	1.66
32842074--32842585	75	6.7	75	86	3	668	29	15	21	33	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240