genome.fa.s24.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  142  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44402679--44402867	51	3.7	50	82	3	236	30	26	16	25	1.97
44402681--44402865	101	1.8	101	88	3	282	30	25	16	26	1.97
44417572--44417607	19	1.9	18	88	5	54	36	5	5	52	1.48
44425277--44425370	42	2.2	42	84	0	125	20	20	34	25	1.96
44426787--44426897	32	3.5	31	75	10	100	38	22	18	19	1.93
44427066--44427171	24	4.4	24	89	0	131	45	24	7	22	1.78
44427073--44427142	11	6.0	11	71	12	59	48	25	5	20	1.71
44427066--44427201	24	5.6	24	79	11	127	44	23	8	23	1.81
44427193--44427713	27	19.3	27	73	3	386	21	20	19	38	1.94
44427193--44427713	81	6.4	80	78	2	468	21	20	19	38	1.94
44428069--44428108	18	2.2	18	86	8	55	22	50	15	12	1.77
44430230--44430285	22	2.5	22	88	5	78	42	19	25	12	1.86
44430278--44430333	25	2.2	25	90	0	85	33	25	26	14	1.94
44431271--44431314	22	2.1	22	87	8	65	52	2	0	45	1.13
44431319--44431485	35	4.9	35	87	5	252	18	23	18	39	1.92
44431319--44431495	67	2.6	67	90	3	266	18	23	17	40	1.91
44437922--44438184	40	6.6	40	88	3	316	26	27	20	24	1.99
44438116--44438193	40	1.9	41	82	10	97	26	28	21	23	1.99
44441783--44441820	14	2.8	13	88	7	58	44	5	13	36	1.66
44445473--44445552	25	3.3	24	79	8	83	37	20	26	16	1.93
44446439--44446481	22	2.0	22	81	9	52	9	13	6	69	1.35
44446487--44446570	5	16.4	5	87	9	107	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44461338--44461545	104	2.0	104	100	0	416	25	17	20	36	1.94
44466915--44466975	28	2.2	28	84	0	77	22	19	13	44	1.85
44471704--44471732	15	1.9	15	100	0	58	68	0	6	24	1.13
44471707--44471741	15	2.3	15	90	0	52	71	0	8	20	1.11
44471704--44471741	18	2.1	18	85	9	51	71	0	7	21	1.11
44480052--44480209	65	2.4	65	88	0	217	25	22	20	31	1.98
44490978--44491012	12	2.8	12	91	4	52	51	11	11	25	1.71
44510706--44510747	12	3.5	12	96	0	75	26	45	19	9	1.80
44516221--44516253	17	1.9	17	93	0	57	60	12	12	15	1.59
44531158--44531289	54	2.4	54	93	2	221	25	26	15	31	1.96
44539339--44539446	41	2.6	41	88	0	153	25	20	26	27	1.99
44539339--44539478	41	3.5	39	79	12	133	27	18	26	27	1.98
44544309--44544354	16	2.8	17	77	9	51	58	4	2	34	1.30
44544303--44544356	24	2.2	25	78	15	60	61	3	3	31	1.31
44545020--44545074	28	1.9	29	85	3	76	50	14	7	27	1.69
44546634--44546676	20	2.2	20	100	0	86	18	32	30	18	1.95
44548419--44548606	95	2.0	95	100	0	376	30	17	7	44	1.76
44574674--44574738	22	3.0	21	70	16	60	43	21	23	12	1.86
44577323--44577347	13	1.9	13	100	0	50	56	8	8	28	1.57
44584665--44584822	43	3.7	43	89	0	226	28	14	23	33	1.94
44596397--44596633	100	2.4	99	83	2	296	21	27	23	27	1.99
44596399--44596686	50	5.6	53	75	13	237	21	26	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44599509--44599554	23	2.0	23	100	0	92	30	17	0	52	1.45
44603920--44603944	5	5.0	5	100	0	50	20	0	0	80	0.72
44611581--44611634	26	2.1	26	82	0	63	18	18	29	33	1.95
44615335--44615413	25	3.2	25	78	7	72	26	24	22	26	2.00
44615359--44615417	25	2.4	24	82	2	73	28	23	22	25	1.99
44624719--44624840	22	5.3	22	62	21	61	25	29	11	33	1.91
44624712--44625227	47	11.1	47	89	6	725	26	30	10	32	1.89
44625048--44625121	22	3.3	22	65	20	62	25	32	12	29	1.92
44626676--44626795	56	2.1	56	98	0	231	22	23	9	45	1.81
44627271--44627344	36	2.1	36	100	0	148	47	16	10	25	1.79
44627876--44628011	51	2.7	51	78	0	164	39	5	13	41	1.68
44631651--44631786	51	2.7	51	78	0	164	39	5	13	41	1.68
44638529--44638568	19	2.1	19	100	0	80	55	15	5	25	1.60
44641430--44641482	23	2.4	22	76	20	56	9	18	1	69	1.25
44645923--44646065	50	2.9	50	81	2	180	25	20	29	24	1.99
44653577--44653756	50	3.5	51	81	5	175	26	20	28	23	1.99
44653612--44653805	50	3.9	50	80	2	203	28	22	27	22	1.99
44654007--44654055	20	2.5	20	81	15	66	57	6	22	14	1.59
44657909--44657945	18	2.0	19	89	5	58	51	0	43	5	1.24
44658569--44658616	18	2.7	18	100	0	96	41	0	4	54	1.20
44659221--44659426	103	2.0	103	97	0	385	39	20	10	29	1.85
44662894--44662925	13	2.5	13	100	0	64	31	34	28	6	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44664536--44664697	45	3.6	46	82	8	181	18	19	16	45	1.86
44664666--44664789	45	2.8	45	92	2	205	25	22	16	35	1.95
44664779--44664878	46	2.2	46	87	1	139	19	16	19	46	1.85
44668313--44668434	35	3.5	35	83	0	145	22	25	16	36	1.94
44670621--44670653	17	1.9	17	93	0	57	42	15	0	42	1.46
44677966--44678031	27	2.5	26	82	7	78	57	0	1	40	1.08
44677966--44678025	28	2.2	28	85	5	79	60	0	0	40	0.97
44681283--44681411	43	3.0	43	86	3	179	25	22	3	48	1.65
44686404--44686452	17	2.8	17	90	3	71	44	0	20	34	1.52
44688924--44689052	42	3.0	43	85	4	172	25	24	3	47	1.66
44691998--44692032	17	2.0	18	88	5	54	45	5	2	45	1.41
44693142--44693174	17	1.9	17	100	0	66	30	6	27	36	1.81
44700334--44700376	20	2.2	20	86	0	59	2	18	2	76	1.00
44706012--44706078	30	2.2	30	89	0	98	25	19	32	22	1.97
44710262--44710314	19	2.8	19	97	0	97	16	22	26	33	1.96
44720983--44721022	8	5.0	8	96	0	71	22	0	0	77	0.77
44722279--44722321	15	2.8	15	89	3	50	53	11	6	27	1.63
44722288--44722323	15	2.4	15	95	0	63	52	11	5	30	1.59
44724185--44724219	18	1.9	18	88	0	52	42	2	0	54	1.15
44727402--44728200	47	16.7	47	92	2	1274	33	8	29	29	1.86
44727402--44728200	96	8.4	94	94	1	1274	33	8	29	29	1.86
44728319--44728419	37	2.7	37	95	0	175	25	17	30	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44738308--44738842	289	1.9	289	92	0	910	37	8	19	34	1.83
44741055--44741089	16	2.2	16	89	0	52	40	0	2	57	1.14
44741177--44741233	15	3.5	15	71	17	51	49	1	1	47	1.22
44741909--44743128	610	2.0	610	93	0	2064	32	15	15	36	1.89
44746447--44746517	26	2.7	26	93	0	124	29	21	22	26	1.99
44758272--44758318	19	2.6	18	87	12	69	23	4	2	70	1.16
44764257--44764350	38	2.5	37	84	3	116	29	23	14	31	1.95
44776710--44776744	2	17.5	2	93	0	61	0	48	0	51	1.00
44780122--44780426	108	2.9	105	86	3	398	31	18	17	32	1.94
44780961--44781000	17	2.3	18	95	4	73	37	0	20	42	1.52
44782689--44782727	21	1.9	21	89	5	62	28	0	2	69	1.02
44790051--44790233	92	2.0	92	97	0	348	30	7	13	48	1.71
44791490--44791544	20	2.7	19	86	8	65	61	7	7	23	1.47
44791616--44791663	24	2.0	24	84	8	62	68	0	10	20	1.18
44791695--44791741	22	2.0	24	88	8	71	63	6	8	21	1.44
44793284--44793388	49	2.1	50	82	8	126	25	22	24	26	2.00
44793536--44793690	50	3.1	50	70	3	132	25	21	22	30	1.99
44793416--44793690	100	2.8	99	82	3	302	24	20	24	30	1.99
44807904--44808008	49	2.1	50	85	1	140	25	21	23	28	1.99
44808156--44808310	50	3.1	50	71	3	150	23	22	23	30	1.99
44808036--44808310	100	2.8	99	84	5	324	23	21	24	30	1.99
44807935--44808958	272	3.8	272	96	0	1825	24	21	24	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44808136--44808482	172	2.0	172	83	3	439	25	21	24	29	1.99
44808428--44808582	50	3.1	49	73	7	150	26	21	20	30	1.98
44808308--44808582	100	2.8	99	82	5	297	25	21	22	30	1.99
44808408--44808754	172	2.0	172	81	5	398	26	21	22	29	1.99
44808580--44808835	100	2.6	100	80	6	286	24	21	23	30	1.99
44811189--44811243	20	2.7	19	86	8	65	61	7	7	23	1.47
44811394--44811440	22	2.0	24	88	8	71	63	6	8	21	1.44
44814284--44814440	39	3.9	39	84	5	156	44	19	3	33	1.66
44814475--44814517	16	2.7	15	79	10	50	48	25	0	25	1.51
44834160--44834215	25	2.2	25	87	6	76	50	1	1	46	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240