genome.fa.s24.2.7.7.80.10.50.1000.229.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  229  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69011859--69011894	18	2.1	17	90	10	56	38	0	0	61	0.96
69012051--69012146	45	2.2	44	88	5	140	35	28	5	31	1.79
69019054--69019096	18	2.4	18	88	0	59	41	44	2	11	1.53
69019138--69019166	6	4.8	6	100	0	58	65	17	0	17	1.27
69019206--69019281	9	8.4	9	84	5	91	27	9	21	42	1.83
69019206--69019273	27	2.5	27	90	4	102	26	10	22	41	1.85
69029424--69029507	42	2.0	42	97	0	159	32	21	8	38	1.83
69030186--69030228	18	2.4	18	88	7	61	53	0	0	46	1.00
69034029--69034062	13	2.5	13	90	4	50	14	5	5	73	1.21
69035795--69036156	153	2.4	152	89	2	530	22	21	17	38	1.93
69035795--69036213	153	2.7	151	83	2	498	22	22	16	38	1.93
69060387--69060427	21	2.0	21	81	18	50	31	19	26	21	1.97
69063493--69063538	24	1.9	24	90	0	74	34	4	4	56	1.39
69064415--69064552	69	2.0	69	100	0	276	42	23	11	23	1.86
69070919--69070968	9	5.6	9	85	0	73	20	26	14	40	1.90
69070919--69070968	18	2.8	18	96	0	91	20	26	14	40	1.90
69070924--69070982	18	3.3	18	88	4	66	18	30	13	37	1.90
69075079--69075127	18	2.6	19	78	18	57	22	2	2	73	1.04
69075070--69075127	22	2.6	22	78	10	73	22	1	3	72	1.09
69078218--69078258	21	2.0	21	85	4	57	65	0	0	34	0.93
69078216--69078301	29	2.9	29	79	17	97	61	0	0	38	0.96
69085252--69085304	23	2.3	23	100	0	106	22	20	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69087778--69088084	154	2.0	154	98	0	596	33	20	27	19	1.96
69092757--69092809	23	2.3	23	100	0	106	22	20	26	30	1.98
69099804--69099828	10	2.5	10	100	0	50	20	20	40	20	1.92
69105052--69105096	3	14.3	3	86	9	63	28	0	4	66	1.11
69109329--69109452	30	4.2	30	81	5	135	29	18	3	49	1.63
69109336--69109469	30	4.5	30	78	5	128	32	17	3	46	1.66
69109335--69109469	60	2.2	60	81	2	164	31	17	3	46	1.66
69109330--69109498	90	1.9	90	80	4	198	31	18	3	46	1.66
69109769--69109931	18	9.3	17	74	12	116	31	7	12	47	1.71
69109769--69109924	17	8.9	17	71	10	82	30	7	13	48	1.70
69109823--69109961	34	4.1	34	78	8	133	28	10	13	47	1.75
69109823--69109931	34	3.1	34	81	7	139	27	9	14	48	1.74
69109826--69109925	51	1.9	51	88	6	148	22	9	16	53	1.70
69109824--69109961	17	8.2	17	72	11	106	28	10	13	47	1.75
69117322--69117365	20	2.2	20	84	4	54	86	6	4	2	0.77
69118221--69119137	78	11.7	78	85	6	1128	28	17	19	35	1.94
69118221--69119137	313	2.9	311	86	5	1217	28	17	19	35	1.94
69119791--69119877	8	10.4	8	80	16	70	77	0	21	1	0.84
69119792--69119877	10	7.9	11	74	14	54	76	0	22	1	0.85
69119822--69119878	8	7.1	8	87	0	87	82	0	17	0	0.67
69120507--69120800	18	17.3	17	65	20	89	30	11	11	46	1.75
69120507--69120800	17	17.3	18	65	22	109	30	11	11	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69120636--69120693	16	3.5	16	71	15	55	36	10	10	43	1.73
69120619--69120695	16	4.8	16	67	19	52	37	9	10	42	1.71
69120639--69120734	36	2.7	36	85	4	115	34	11	10	43	1.75
69120693--69120793	52	1.9	52	84	7	134	23	10	13	51	1.73
69120647--69120799	35	4.4	36	77	10	138	28	10	13	47	1.75
69124781--69125039	91	2.8	91	98	0	491	47	3	2	47	1.32
69125131--69125300	38	4.7	35	68	20	100	43	1	5	48	1.37
69125189--69125234	16	2.9	16	78	12	51	45	0	2	52	1.13
69125124--69125323	107	1.9	108	95	1	366	43	2	5	49	1.35
69125304--69125350	24	2.0	24	83	8	60	46	2	2	48	1.25
69125560--69125613	16	3.4	16	94	0	90	31	35	0	33	1.58
69128190--69128651	43	10.8	42	77	5	381	28	22	23	25	2.00
69128190--69128627	128	3.4	125	80	7	450	28	23	22	25	1.99
69128300--69128586	85	3.4	84	78	8	235	30	22	21	25	1.98
69128984--69129025	21	2.0	21	90	0	66	11	42	14	30	1.81
69129001--69129173	87	2.0	87	84	6	226	13	29	16	40	1.87
69129394--69129592	99	2.0	99	99	0	389	31	22	12	33	1.91
69132650--69133009	41	8.8	41	75	3	260	35	22	23	19	1.96
69132650--69133009	82	4.4	82	78	4	314	35	22	23	19	1.96
69132667--69133009	123	2.8	123	76	5	334	36	22	22	18	1.95
69133352--69133391	21	2.0	21	95	5	73	52	2	0	45	1.14
69136200--69136242	22	2.0	21	86	4	59	27	0	16	55	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69138347--69138429	39	2.1	39	90	0	130	27	13	25	33	1.93
69140556--69140622	16	4.1	16	72	14	57	56	1	7	34	1.36
69140605--69140657	23	2.2	24	83	3	63	56	3	5	33	1.41
69140724--69140795	3	23.0	3	80	5	72	62	4	4	29	1.32
69147391--69147454	26	2.5	25	89	2	101	59	1	4	34	1.28
69149648--69149727	26	2.9	27	78	12	83	57	0	0	42	0.98
69153542--69153567	13	2.0	13	100	0	52	46	7	23	23	1.78
69157638--69157729	47	2.0	45	84	12	118	54	4	5	35	1.43
69162531--69162555	12	2.1	12	100	0	50	32	0	0	68	0.90
69163287--69163359	36	2.0	36	97	0	137	28	10	9	50	1.69
69163398--69163457	30	2.0	30	90	0	93	58	0	0	41	0.98
69163401--69163494	46	2.1	44	88	7	136	61	0	0	38	0.96
69163432--69163473	8	5.2	8	86	8	59	69	0	0	30	0.89
69185936--69185976	21	2.0	21	90	0	64	19	29	21	29	1.98
69200808--69200895	18	4.7	18	72	10	70	21	3	9	65	1.35
69208665--69208730	31	2.2	30	80	15	75	66	0	0	33	0.92
69209105--69209143	16	2.4	17	86	4	53	25	10	0	64	1.25
69211306--69211330	12	2.1	12	100	0	50	0	24	0	76	0.80
69212742--69212775	13	2.5	13	90	4	50	14	5	5	73	1.21
69214505--69214789	147	1.9	147	91	2	466	22	22	16	38	1.93
69223119--69223175	3	18.7	3	78	10	62	59	0	7	33	1.24
69223830--69223868	14	2.6	16	84	12	55	76	2	2	17	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69223830--69223868	5	7.8	5	83	11	53	76	2	2	17	1.01
69223827--69223869	19	2.3	19	84	11	61	79	2	2	16	0.95
69227538--69227567	9	3.3	9	95	0	51	23	20	20	36	1.95
69232400--69232433	13	2.4	14	90	9	52	5	0	5	88	0.64
69239503--69239532	15	1.9	16	93	6	53	30	0	30	40	1.57
69244508--69244873	103	3.5	103	92	1	581	32	28	19	18	1.96
69249347--69249395	25	2.0	25	84	8	64	34	16	30	18	1.93
69253677--69253719	18	2.4	18	88	7	61	53	0	0	46	1.00
69253801--69253829	13	2.2	13	100	0	58	31	17	20	31	1.96
69256948--69257006	4	14.8	4	100	0	118	25	0	23	50	1.49
69259082--69259128	24	2.0	24	91	8	78	34	0	14	51	1.43
69262920--69262962	18	2.4	18	88	7	61	53	0	0	46	1.00
69268175--69268568	153	2.6	153	85	5	521	25	19	17	38	1.93
69272280--69272314	14	2.5	14	90	0	52	25	17	8	48	1.75
69273177--69273215	16	2.4	16	91	0	60	53	10	0	35	1.35
69273285--69273326	16	2.6	16	92	0	66	42	7	2	47	1.43
69299091--69299290	100	2.0	100	100	0	400	43	19	11	27	1.84
69318379--69318410	7	4.7	7	96	3	57	37	0	0	62	0.95
69318371--69318410	13	3.0	13	89	7	62	37	0	0	62	0.95
69318371--69318410	20	2.0	20	85	9	55	37	0	0	62	0.95
69320311--69320362	26	2.0	26	100	0	104	57	3	11	26	1.51
69320313--69320369	26	2.2	26	93	0	96	57	7	8	26	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69320630--69320680	18	2.9	18	80	11	52	37	1	0	60	1.08
69325918--69326279	153	2.4	154	89	2	552	26	19	16	38	1.92
69325918--69326335	153	2.7	152	85	3	464	25	20	15	37	1.93
69331961--69331991	5	6.2	5	100	0	62	19	0	0	80	0.71
69341120--69341166	20	2.4	19	76	13	51	31	2	0	65	1.04
69341104--69341164	32	1.9	32	82	0	77	34	1	0	63	1.04
69341104--69341166	16	3.9	16	75	8	65	34	1	0	63	1.04
69342573--69342875	9	33.7	9	74	13	241	33	0	20	44	1.58
69344983--69345058	40	1.9	39	84	7	100	34	21	19	25	1.96
69345546--69345585	7	5.7	7	84	0	53	32	42	0	25	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240