genome.fa.s24.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  98  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30696917--30697000	43	2.0	43	92	0	141	26	28	16	28	1.97
30696919--30697013	43	2.2	43	86	3	129	27	28	20	24	1.99
30698982--30699188	44	4.8	44	77	9	158	29	13	23	32	1.93
30699035--30699199	42	3.9	43	76	11	162	29	12	24	33	1.92
30699707--30699744	16	2.4	16	86	8	51	31	0	15	52	1.43
30702942--30702998	26	2.2	26	84	9	71	42	29	15	12	1.84
30705763--30705871	27	4.1	26	84	3	137	44	20	16	19	1.87
30705767--30705886	27	4.6	26	80	9	127	41	20	16	21	1.90
30705766--30705868	53	1.9	53	88	0	152	44	19	15	20	1.86
30709176--30709224	4	12.2	4	100	0	98	24	0	0	75	0.80
30709715--30709754	21	1.9	21	85	10	55	35	7	0	57	1.27
30710037--30710129	44	2.1	43	82	2	105	51	2	6	39	1.40
30710102--30710153	15	3.1	17	78	21	56	61	0	0	38	0.96
30710121--30710153	12	2.6	13	90	4	50	63	0	0	36	0.95
30718636--30718687	21	2.5	21	84	6	61	25	3	3	67	1.25
30718636--30718701	20	3.2	21	81	8	66	28	3	3	65	1.23
30724428--30724551	42	3.0	42	84	4	153	28	16	25	29	1.96
30727477--30727510	2	17.0	2	93	0	59	50	47	0	2	1.16
30730006--30730063	11	5.2	11	87	2	80	22	32	1	43	1.64
30730006--30730081	22	3.4	23	84	14	97	25	31	1	42	1.63
30730005--30730079	33	2.2	33	84	9	98	24	32	1	42	1.63
30730005--30730081	11	6.9	11	74	21	72	24	31	1	42	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30731190--30731215	7	3.7	7	100	0	52	26	0	15	57	1.38
30732361--30732443	25	3.3	25	91	0	121	38	1	15	44	1.55
30732317--30732487	95	1.8	94	83	5	231	39	1	13	46	1.51
30735630--30736001	124	3.0	124	88	3	586	30	21	18	29	1.97
30740161--30740213	7	7.6	7	97	0	88	22	0	0	77	0.77
30740221--30740278	26	2.4	26	86	11	79	36	0	1	62	1.06
30740597--30740685	31	2.8	31	79	17	101	26	1	2	69	1.07
30741510--30741554	21	2.2	21	84	7	58	46	22	22	8	1.79
30741525--30741677	42	3.6	42	81	0	180	47	17	18	16	1.83
30741525--30741677	21	7.3	21	74	0	108	47	17	18	16	1.83
30743280--30743326	19	2.5	19	96	3	87	57	0	4	38	1.18
30752944--30752985	21	2.0	21	81	9	50	64	4	0	30	1.14
30754539--30754582	11	3.7	11	80	16	52	54	2	2	40	1.25
30757938--30758093	81	1.9	79	89	5	242	43	10	16	28	1.82
30767961--30768051	45	2.0	45	97	0	173	41	10	13	34	1.79
30767961--30768033	24	3.2	24	62	31	59	38	10	13	36	1.80
30768554--30768589	16	2.2	16	90	0	54	27	27	2	41	1.70
30768966--30768996	9	3.4	9	90	0	53	25	12	22	38	1.90
30769052--30769085	9	3.8	9	92	0	50	44	14	14	26	1.84
30769049--30769085	18	2.1	18	94	0	65	45	13	13	27	1.81
30769298--30769357	30	2.0	31	83	3	77	18	41	0	40	1.50
30771116--30771155	21	1.9	21	85	10	55	27	2	12	57	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30772643--30772675	12	2.8	12	100	0	66	33	6	0	60	1.21
30772791--30772858	27	2.7	24	77	9	64	38	7	1	52	1.38
30772932--30772984	8	6.4	8	75	16	54	35	3	1	58	1.27
30772932--30773008	27	2.9	26	83	9	77	36	6	1	55	1.34
30772766--30773040	148	1.9	143	89	6	426	33	6	3	56	1.41
30774839--30774869	16	1.9	16	93	0	53	25	19	19	35	1.95
30779563--30780097	41	12.7	40	73	10	354	29	21	21	28	1.98
30779572--30780101	83	6.3	83	80	7	559	28	20	22	28	1.99
30779561--30779969	42	9.7	43	70	15	255	30	21	21	27	1.98
30779655--30780015	127	2.8	127	94	0	625	29	21	22	27	1.99
30781372--30781420	3	16.0	3	91	4	80	32	2	0	65	1.04
30781534--30781635	27	3.7	26	72	18	73	36	5	2	54	1.40
30781687--30781754	27	2.6	24	84	15	75	35	8	1	54	1.41
30781484--30781798	158	2.0	154	90	5	490	35	7	2	54	1.40
30781719--30781793	30	2.6	28	75	10	57	37	10	1	50	1.46
30781539--30781867	158	2.1	157	82	5	396	36	9	2	52	1.45
30781522--30781893	158	2.4	155	80	9	375	35	9	2	52	1.45
30781925--30781949	2	12.5	2	100	0	50	48	0	0	52	1.00
30785971--30786009	17	2.3	17	95	0	69	38	0	12	48	1.42
30793315--30793342	7	4.0	7	100	0	56	42	0	0	57	0.99
30794701--30794847	76	1.9	76	81	8	174	29	22	15	31	1.95
30805595--30805828	76	3.1	75	74	2	216	23	20	21	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30817359--30817393	17	2.1	17	88	0	52	20	28	37	14	1.91
30820856--30820948	46	2.0	46	100	0	186	34	21	10	33	1.88
30820994--30821111	10	12.7	9	76	14	107	66	5	0	27	1.15
30820994--30821102	18	5.9	17	76	14	92	66	6	0	27	1.16
30821013--30821113	28	3.6	27	84	9	107	65	4	0	29	1.14
30820994--30821111	38	3.2	38	78	17	124	66	5	0	27	1.15
30821824--30821875	20	2.7	19	84	3	68	25	0	15	59	1.36
30821825--30821868	10	4.4	10	80	11	54	22	0	13	63	1.29
30821906--30821950	19	2.2	20	88	7	65	31	2	6	60	1.35
30821903--30821950	21	2.4	21	86	6	73	31	2	6	60	1.33
30822075--30822215	60	2.4	57	81	9	160	34	8	17	40	1.79
30824253--30824307	26	2.1	26	82	0	65	41	12	20	25	1.87
30824536--30824575	17	2.3	18	91	4	64	45	0	0	55	0.99
30824565--30824619	19	2.9	19	86	5	76	36	0	5	58	1.21
30826006--30826056	19	2.8	19	75	16	54	23	1	3	70	1.14
30827419--30827453	16	2.2	16	89	0	52	22	14	20	42	1.88
30830674--30830730	28	2.2	25	80	19	73	77	12	0	10	1.00
30830690--30830731	21	2.0	22	90	4	68	71	14	0	14	1.15
30830674--30830721	16	3.2	15	82	8	62	77	12	0	10	1.00
30830749--30830782	16	2.1	17	88	5	52	79	0	20	0	0.73
30830750--30830782	12	2.8	12	90	4	50	81	0	18	0	0.68
30832037--30832204	88	1.9	88	88	2	257	27	18	27	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30832224--30832644	167	2.5	167	87	0	601	25	19	27	27	1.99
30832561--30832939	50	7.6	50	67	1	238	28	20	26	25	1.99
30832567--30832969	100	4.0	100	88	0	556	28	20	24	26	1.99
30834649--30834694	10	4.7	10	91	2	67	21	2	4	71	1.14
30854721--30854806	40	2.2	40	89	0	127	32	12	18	36	1.89
30859311--30859441	27	4.9	27	88	0	181	34	9	28	28	1.88
30860878--30860939	30	2.1	30	96	0	115	35	9	14	40	1.79
30883257--30883302	22	2.1	22	100	0	92	23	4	13	58	1.52
30886672--30886719	14	3.4	14	80	11	53	66	2	2	29	1.14
30887545--30887632	45	2.0	44	91	6	142	30	3	27	38	1.73
30887543--30887650	45	2.6	40	78	18	114	32	2	25	38	1.71
30888422--30888517	47	2.0	47	95	0	174	46	5	2	45	1.37
30889543--30889568	13	2.0	13	100	0	52	38	7	7	46	1.61
30908159--30908364	45	4.6	45	90	5	312	28	21	15	34	1.94
30908159--30908364	91	2.3	90	90	4	319	28	21	15	34	1.94
30914526--30914556	12	2.6	12	94	0	53	29	0	12	58	1.35
30918266--30918319	5	11.0	5	82	7	58	18	1	1	77	0.95
30932823--30933168	84	4.2	84	84	7	447	22	20	23	33	1.97
30932845--30933168	126	2.6	127	88	5	493	22	21	23	32	1.98
30932845--30933164	40	7.8	39	81	11	338	23	21	23	32	1.98
30933155--30933337	44	4.2	44	64	8	102	29	24	18	27	1.98
30932823--30933205	210	1.8	207	84	6	520	23	21	22	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30933133--30933439	132	2.3	132	93	0	515	27	25	18	28	1.98
30933436--30934456	88	11.6	88	83	2	1065	24	22	23	28	1.99
30933436--30933926	44	11.1	44	67	14	199	23	23	24	28	1.99
30933436--30934502	264	4.0	264	82	2	1180	24	22	23	29	1.99
30934927--30935122	108	1.8	108	86	2	286	46	11	16	25	1.80
30935088--30935188	45	2.3	43	80	10	112	52	8	12	25	1.68
30935467--30935504	12	3.2	12	88	0	58	0	13	5	81	0.85
30935459--30935511	24	2.2	23	83	9	70	0	13	5	81	0.86
30953311--30953345	18	1.9	18	88	0	52	42	0	2	54	1.15
30953793--30953829	19	1.9	19	88	0	56	10	5	10	72	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240