genome.fa.s24.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  151  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47467479--47467684	85	2.4	85	85	6	267	30	31	18	18	1.96
47469546--47469576	10	3.1	10	95	0	53	51	12	19	16	1.76
47470247--47470285	12	3.2	12	88	0	60	38	28	10	23	1.87
47472136--47472177	21	2.0	22	85	4	59	35	40	0	23	1.55
47472158--47472186	15	1.9	15	100	0	58	34	51	0	13	1.42
47472143--47472207	22	3.0	22	80	4	62	36	43	0	20	1.52
47472202--47472248	15	3.3	15	85	8	62	40	31	2	25	1.68
47472449--47472506	15	3.9	15	81	2	73	34	44	0	20	1.52
47472474--47472514	21	2.0	20	85	4	55	39	41	0	19	1.52
47472501--47472548	14	3.4	14	80	5	51	47	33	0	18	1.49
47472821--47472924	41	2.5	41	87	3	138	30	28	19	21	1.97
47473013--47473147	40	3.4	40	77	8	134	20	16	22	40	1.91
47473599--47473675	24	3.2	24	78	10	77	14	40	6	38	1.72
47484216--47484501	138	2.1	140	90	2	452	45	4	8	40	1.56
47496675--47496774	50	2.0	50	96	0	182	39	11	13	37	1.79
47498401--47498486	25	3.4	25	83	0	118	25	15	22	37	1.93
47500872--47501435	126	4.5	125	89	1	785	30	16	23	30	1.96
47504532--47504654	21	5.8	21	81	1	138	26	1	25	47	1.61
47504532--47504652	43	2.8	43	83	1	154	25	1	24	47	1.61
47506931--47507030	51	2.0	51	82	7	123	45	2	25	28	1.65
47506990--47507044	11	4.9	11	77	16	60	43	1	29	25	1.65
47511983--47512019	17	2.1	18	90	5	58	48	16	0	35	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47515329--47515399	34	2.1	34	94	0	124	33	32	4	29	1.77
47519514--47519676	75	2.2	75	87	2	238	38	21	19	20	1.93
47527749--47527846	48	2.0	48	98	0	187	52	13	17	17	1.75
47530480--47530549	32	2.2	32	97	2	133	45	25	14	14	1.82
47545099--47545621	182	2.9	181	94	1	893	33	14	16	34	1.90
47552586--47552689	50	2.1	50	94	1	183	41	2	15	40	1.62
47561462--47561519	18	3.2	19	70	22	52	37	0	10	51	1.36
47561818--47561851	16	2.0	18	88	11	54	8	5	8	76	1.15
47563584--47563768	101	1.8	102	89	3	293	24	17	27	30	1.97
47563580--47563775	51	3.9	51	81	4	227	25	17	27	29	1.98
47563772--47563867	45	2.1	45	88	0	147	29	17	22	30	1.97
47572305--47573213	303	3.0	303	97	0	1728	36	18	17	27	1.93
47576940--47577066	59	2.1	60	83	1	157	40	3	12	43	1.61
47580329--47580355	14	1.9	14	100	0	54	37	7	3	51	1.48
47581611--47581707	29	3.1	34	62	32	90	29	10	13	46	1.76
47581624--47581719	33	3.2	33	67	27	102	31	9	14	44	1.77
47581877--47581905	14	2.1	14	100	0	58	20	0	20	58	1.39
47586865--47586918	22	2.3	24	84	15	69	35	3	5	55	1.41
47589187--47589261	23	3.3	23	96	0	132	30	17	17	34	1.93
47592668--47592730	29	2.1	32	85	8	87	55	0	0	44	0.99
47603457--47603523	32	2.1	32	86	2	91	50	8	23	16	1.73
47607317--47607367	18	3.0	17	91	8	86	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47607312--47607372	18	3.4	18	84	15	74	40	1	0	57	1.08
47610593--47610635	21	2.0	21	86	8	61	34	0	6	58	1.25
47610651--47610723	10	7.9	10	70	14	59	42	0	0	57	0.98
47610686--47610823	26	5.5	25	69	22	94	41	0	3	54	1.23
47610593--47611130	117	4.9	110	80	15	584	42	1	4	52	1.28
47610681--47610894	99	2.2	99	98	0	410	40	1	4	53	1.33
47610600--47611117	216	2.4	219	93	3	893	41	1	4	52	1.29
47610807--47610987	59	3.1	59	69	10	190	39	2	4	53	1.35
47610897--47611136	103	2.4	99	92	4	340	43	0	4	51	1.26
47616881--47616917	9	4.2	9	86	6	58	56	29	0	13	1.37
47617232--47617293	28	2.2	29	85	5	90	24	0	17	58	1.39
47618921--47618985	29	2.3	28	84	5	85	47	18	7	26	1.75
47619313--47619354	21	2.0	21	86	9	59	30	7	14	47	1.71
47633791--47633892	20	5.0	19	67	12	60	35	17	30	16	1.92
47633768--47634040	41	6.7	41	87	0	368	35	16	28	19	1.94
47633777--47634038	123	2.1	123	89	0	407	35	16	27	20	1.94
47633955--47634021	20	3.3	19	68	12	53	37	17	29	14	1.91
47648925--47648957	4	8.5	4	86	6	50	48	0	30	21	1.50
47648927--47648963	12	3.2	12	85	7	51	43	0	32	24	1.55
47648925--47648973	23	2.1	23	85	7	64	42	0	34	22	1.54
47648932--47648977	8	6.0	8	85	7	51	39	0	36	23	1.55
47650623--47651420	398	2.0	398	98	0	1542	27	20	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47653191--47653431	126	1.9	126	92	2	405	51	4	3	40	1.42
47662901--47663222	168	1.9	168	100	0	644	37	18	9	35	1.82
47664215--47664275	11	5.5	11	92	5	97	24	26	0	49	1.51
47669797--47670208	126	3.3	125	91	2	657	26	21	18	32	1.97
47670243--47670524	97	2.9	94	78	9	300	41	18	3	36	1.66
47670783--47670810	14	2.0	14	100	0	56	14	28	42	14	1.84
47673352--47673416	18	3.6	18	79	8	69	26	23	20	30	1.98
47673526--47673573	24	2.0	24	88	8	71	27	12	8	52	1.67
47677980--47678026	24	2.0	24	87	8	69	38	4	8	48	1.53
47700853--47700894	13	2.9	14	80	13	50	54	0	0	45	0.99
47700857--47700893	16	2.3	16	86	13	58	59	0	0	40	0.97
47703618--47703663	10	4.8	10	84	7	51	71	2	13	13	1.23
47703618--47703661	19	2.3	20	80	11	56	72	2	13	11	1.21
47703627--47703663	19	1.9	19	94	0	65	72	2	10	13	1.21
47703627--47703665	10	4.0	10	83	6	53	74	2	10	12	1.17
47704087--47704128	10	4.6	9	82	11	50	76	2	9	11	1.12
47704087--47704123	19	1.9	19	94	0	65	72	2	10	13	1.21
47711474--47711658	79	2.3	82	83	7	229	25	27	22	24	2.00
47711455--47711658	40	5.1	40	80	8	220	25	27	22	25	2.00
47719406--47719590	79	2.3	82	83	7	229	24	27	22	24	2.00
47719387--47719590	40	5.1	40	81	8	229	24	27	22	25	2.00
47737458--47737605	54	2.6	54	80	10	154	25	16	13	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47739331--47739400	30	2.3	31	87	7	99	31	24	10	34	1.88
47740396--47740457	23	2.6	25	79	10	74	37	29	4	29	1.78
47745658--47745740	27	3.1	27	85	0	112	39	21	24	14	1.91
47746957--47747063	54	2.0	54	88	0	160	48	11	13	27	1.75
47753260--47753399	71	2.0	72	81	7	169	51	17	14	16	1.77
47754167--47754191	2	12.5	2	100	0	50	52	0	48	0	1.00
47766717--47766789	20	3.5	20	68	18	60	24	4	2	68	1.20
47767510--47767544	10	3.5	10	96	0	61	25	0	11	62	1.28
47767562--47767625	20	3.4	19	85	6	85	42	0	3	54	1.16
47768337--47768401	10	6.3	10	74	13	60	61	3	1	33	1.21
47768313--47768403	21	4.4	21	81	10	82	59	2	1	37	1.17
47768368--47768480	29	3.8	30	69	21	94	62	5	2	29	1.30
47768364--47768480	59	2.0	59	81	6	139	62	5	2	29	1.30
47768744--47768819	28	2.8	26	76	11	80	35	0	1	63	1.03
47768767--47768839	28	2.6	27	83	16	87	36	1	0	61	1.05
47775610--47775656	4	11.8	4	95	0	85	27	0	21	51	1.48
47788910--47788944	16	2.2	16	90	5	54	34	0	20	45	1.51
47788921--47788965	20	2.4	18	89	10	65	37	0	11	51	1.38
47792210--47792238	2	14.5	2	100	0	58	0	0	48	51	1.00
47792300--47792340	21	1.9	22	85	5	57	39	7	26	26	1.82
47807759--47807802	21	2.2	20	84	8	54	18	20	34	27	1.96
47810718--47810837	25	4.9	25	69	18	72	37	20	24	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47810710--47810815	50	2.1	49	81	5	115	36	20	25	16	1.94
47810798--47810865	24	2.9	23	82	10	84	39	19	25	16	1.91
47812900--47813005	54	2.0	54	92	3	178	28	17	14	39	1.89
47817347--47817456	54	2.0	54	94	3	195	27	18	13	40	1.88
47847797--47847856	26	2.3	26	91	0	93	25	31	20	23	1.98
47847813--47847865	26	2.0	26	92	0	88	26	30	18	24	1.98
47852101--47852167	33	2.0	33	100	0	134	29	17	17	34	1.94
47852337--47852841	144	3.6	144	82	5	548	27	22	17	32	1.96
47862008--47862048	21	2.0	21	90	9	66	12	2	0	85	0.70
47862008--47862040	7	4.7	7	100	0	66	12	0	0	87	0.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240