genome.fa.s24.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  118  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36743253--36743317	33	2.0	33	81	6	78	24	24	26	24	2.00
36744400--36744438	12	3.2	12	85	0	51	20	23	5	51	1.67
36744700--36744926	50	4.4	50	79	4	222	22	29	20	27	1.99
36746032--36746101	28	2.5	28	90	2	115	25	22	30	21	1.99
36747179--36747217	12	3.2	12	85	0	51	20	23	5	51	1.67
36747479--36747707	50	4.5	50	79	5	201	23	27	21	27	1.99
36747479--36747707	100	2.2	101	81	8	250	23	27	21	27	1.99
36748048--36748106	30	2.0	30	86	0	82	32	23	8	35	1.85
36748924--36748977	28	1.9	28	92	0	90	29	25	24	20	1.99
36749287--36749344	27	2.1	27	83	0	71	18	20	29	31	1.97
36749319--36749521	27	7.5	27	83	3	239	17	19	20	42	1.89
36752887--36753111	40	5.7	40	87	5	296	24	20	28	26	1.99
36752887--36753109	119	1.9	120	85	4	317	24	21	27	26	1.99
36752926--36753144	79	2.8	79	82	7	257	26	19	27	26	1.99
36760771--36760996	40	5.7	40	87	4	296	24	21	27	26	1.99
36760771--36761029	120	2.2	120	81	6	303	25	20	27	25	1.99
36762900--36763028	51	2.5	52	87	3	190	26	13	31	28	1.94
36764726--36764779	24	2.2	24	90	3	81	46	25	9	18	1.79
36766566--36766669	42	2.5	42	87	0	145	39	24	13	23	1.90
36766672--36766862	41	4.7	41	84	5	244	21	23	20	34	1.97
36773879--36773911	17	2.0	17	88	5	50	45	30	0	24	1.53
36775298--36775351	28	1.9	28	81	7	65	62	3	1	31	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36776961--36777010	21	2.3	22	82	3	57	48	6	40	6	1.52
36777066--36777131	17	3.8	17	73	13	62	21	0	18	60	1.36
36780937--36781349	30	13.8	30	78	8	342	23	23	14	38	1.91
36780950--36781174	89	2.5	89	94	0	378	20	24	14	40	1.90
36788645--36788721	28	2.7	29	78	13	86	20	28	5	45	1.73
36788611--36788743	30	4.5	29	71	20	89	21	28	10	39	1.87
36788671--36788792	29	4.2	29	73	13	79	19	28	12	39	1.88
36792824--36792878	27	2.1	25	83	6	65	20	10	10	58	1.62
36793059--36793114	13	4.2	13	77	11	51	19	8	0	71	1.12
36797533--36797571	18	2.0	20	85	9	55	28	12	10	48	1.74
36798233--36798280	25	1.9	25	95	0	87	27	6	29	37	1.81
36798450--36798498	25	2.0	25	91	0	80	36	14	16	32	1.89
36798448--36798514	25	2.7	25	80	0	71	37	13	19	29	1.90
36804871--36805029	78	2.0	78	97	0	300	35	10	11	41	1.77
36805296--36805330	17	2.1	17	100	0	70	28	25	34	11	1.91
36805982--36806031	24	2.1	24	100	0	100	32	20	24	24	1.98
36808914--36808947	17	2.0	17	88	11	52	20	14	0	64	1.28
36809495--36809535	19	2.2	19	86	8	57	58	34	0	7	1.26
36809935--36809974	13	3.1	13	88	0	62	75	5	10	10	1.19
36816394--36816424	16	1.9	16	100	0	62	19	9	19	51	1.74
36816423--36816492	33	2.1	33	81	0	77	38	10	4	47	1.57
36821680--36821714	18	2.1	16	89	10	52	51	20	0	28	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36822628--36822665	19	2.1	19	85	9	53	50	21	0	28	1.49
36823402--36823682	86	3.3	86	77	4	273	41	20	16	21	1.90
36823446--36823803	43	8.4	43	67	10	135	40	22	17	20	1.91
36826308--36826338	15	2.1	15	100	0	62	38	0	25	35	1.56
36831391--36831469	37	2.1	37	90	0	122	25	31	18	24	1.98
36831590--36831763	47	3.7	47	89	1	215	27	31	9	32	1.88
36831588--36831763	94	1.9	94	84	2	237	27	31	9	32	1.88
36837094--36837169	11	6.8	11	72	26	54	55	1	2	40	1.22
36840188--36840228	16	2.6	16	96	0	73	46	4	2	46	1.37
36843897--36843925	13	2.1	14	93	6	51	27	20	20	31	1.98
36848662--36848712	27	2.0	25	84	7	66	31	1	0	66	1.03
36848661--36848718	28	2.2	25	78	9	62	36	3	0	60	1.14
36848917--36848996	42	1.9	42	89	0	124	37	1	8	52	1.41
36850131--36850164	16	2.1	16	88	0	50	70	2	0	26	1.01
36850293--36850364	36	1.9	39	86	8	105	36	6	0	56	1.26
36850697--36850741	20	2.2	20	80	7	56	24	11	20	44	1.83
36852305--36852355	21	2.3	22	77	19	52	58	0	1	39	1.09
36872214--36872556	169	2.0	170	98	0	670	35	12	21	30	1.91
36876272--36876304	6	5.7	6	89	7	50	54	9	18	18	1.69
36884710--36884752	18	2.3	18	88	4	59	37	2	2	58	1.24
36884965--36885002	16	2.3	17	81	9	51	71	13	7	7	1.31
36899871--36900336	225	2.1	224	93	2	792	42	18	13	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36900558--36900619	20	3.1	20	73	17	65	32	20	38	8	1.82
36900549--36900706	40	4.0	40	70	12	110	32	17	31	17	1.94
36906735--36906871	46	2.9	45	78	6	139	26	10	29	32	1.90
36908351--36908388	18	2.1	18	95	0	67	34	5	26	34	1.79
36912264--36912392	53	2.6	50	82	7	129	27	15	26	31	1.96
36912732--36912804	20	3.7	20	75	0	83	36	17	20	24	1.94
36912731--36912807	40	1.9	40	89	0	118	37	18	19	24	1.94
36920341--36920371	15	2.1	15	93	0	53	19	0	3	77	0.90
36924836--36925020	50	3.7	49	76	7	185	24	18	27	29	1.98
36924839--36925020	101	1.8	101	89	4	287	24	18	26	29	1.98
36925026--36925124	46	2.2	43	79	12	101	25	18	24	32	1.97
36927190--36927245	22	2.6	23	88	5	64	37	8	7	46	1.63
36932445--36932948	47	10.6	47	92	2	801	32	8	29	29	1.86
36932445--36932893	96	4.7	96	95	2	762	32	8	28	30	1.86
36932445--36932948	143	3.5	143	94	1	850	32	8	29	29	1.86
36942370--36942402	11	3.1	11	91	4	50	66	0	24	9	1.20
36942505--36942645	50	2.8	51	86	5	205	23	14	29	31	1.95
36945945--36946058	38	3.0	38	92	1	192	14	34	18	32	1.92
36945945--36946076	38	3.4	38	85	7	169	16	33	17	32	1.93
36948479--36948576	49	2.0	49	93	0	169	42	9	10	37	1.71
36952510--36952788	39	7.2	39	85	1	330	16	32	17	33	1.93
36952570--36952672	19	5.3	19	65	13	57	15	35	15	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36952510--36952820	39	8.1	38	83	2	325	16	32	17	33	1.93
36952510--36952820	77	4.0	77	83	3	322	16	32	17	33	1.93
36961165--36961348	45	4.1	45	86	4	248	34	26	16	22	1.95
36969056--36969097	22	2.0	21	85	4	57	9	21	23	45	1.81
36969161--36969412	43	5.9	43	83	2	283	30	29	17	22	1.96
36969161--36969412	129	2.0	129	84	3	328	30	29	17	22	1.96
36970320--36970860	23	23.7	23	70	11	308	40	23	5	31	1.76
36970314--36970618	137	2.2	137	90	2	470	40	22	5	32	1.76
36970314--36970758	137	3.2	136	82	7	429	40	23	5	31	1.76
36970440--36970834	114	3.5	114	92	1	650	39	23	5	31	1.78
36975490--36975733	41	6.0	41	88	0	335	31	26	20	21	1.98
36975490--36975733	82	3.0	82	90	1	373	31	26	20	21	1.98
36975768--36975860	39	2.3	39	82	10	100	20	21	19	38	1.93
36979449--36979750	41	7.4	41	79	7	319	35	16	28	19	1.93
36979458--36979521	21	3.1	21	69	13	60	37	15	28	18	1.92
36981152--36981257	53	2.0	53	96	0	194	28	22	21	27	1.99
36991068--36991164	48	2.0	48	91	0	158	57	22	8	11	1.60
37009974--37010147	27	6.4	27	82	4	188	26	14	28	31	1.95
37009967--37010147	82	2.2	81	81	2	211	26	14	28	30	1.95
37018155--37018328	27	6.4	27	82	4	188	26	14	28	31	1.95
37018148--37018328	82	2.2	81	81	2	211	26	14	28	30	1.95
37032225--37032450	40	5.7	40	85	8	266	25	22	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37032278--37032483	79	2.6	79	81	9	199	27	21	25	25	1.99
37034079--37035035	50	19.2	50	77	2	893	25	20	21	31	1.98
37034092--37035021	100	9.3	100	91	0	1457	26	20	21	31	1.98
37038982--37039047	27	2.5	27	85	4	82	34	24	19	21	1.96
37041784--37041975	50	3.7	50	83	4	213	22	29	21	26	1.99
37041728--37041975	50	4.9	50	78	5	205	24	28	21	26	1.99
37049318--37049498	49	3.7	50	80	5	154	19	24	22	32	1.98
37053782--37053832	26	1.9	27	81	18	63	21	29	21	27	1.99
37064394--37064427	3	11.3	3	100	0	68	67	0	0	32	0.91
37065272--37065312	22	2.0	21	90	9	66	9	19	24	46	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240